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| info_prompt = """For each clinical note, extract the following fields into a structured XML format. | |
| For each of the following fields, return the value if it exists in the notes, otherwise do not return anything between tags. | |
| For example, if the notes mention that the patient's name is "John Doe", then the output should be <patient_name>John Doe</patient_name>. | |
| Otherwise, if the notes do not mention the patient's name, then do not return anything between <patient_name> and </patient_name>. | |
| Additionally, add a <reasoning> tag with the reasoning for why you chose the value you did. This reasoning should be specific to the note and the patient, and if a field is found, it should contain a brief verbatim quote from the notes that is used to justify the value. | |
| - patient_name | |
| - The patient's full name (first and last name). | |
| - For example: | |
| <patient_name> | |
| <reasoning>[REASONING]</reasoning> | |
| <first_name>John</first_name> | |
| <last_name>Doe</last_name> | |
| </patient_name> | |
| - date_of_birth | |
| - The patient's date of birth in the format YYYY-MM-DD. | |
| - For example: | |
| <date_of_birth> | |
| <reasoning>[REASONING]</reasoning> | |
| <date>1990-01-01</date> | |
| </date_of_birth> | |
| - sex | |
| - The patient's sex (M or F). | |
| - For example: | |
| <sex> | |
| <reasoning>[REASONING]</reasoning> | |
| <sex>M</sex> | |
| </sex> | |
| - traditional_chemo | |
| - Any traditional chemotherapy drugs the patient has taken or has been prescribed. | |
| - Within the tags, put a list of all the traditional chemotherapy drugs the patient has taken or has been prescribed as well as the date, if specified. | |
| - For example: | |
| <traditional_chemo_any_time> | |
| <reasoning>[REASONING]</reasoning> | |
| <drug>Doxorubicin/Adriamycin</drug> | |
| <date>2021-01-01</date> | |
| </traditional_chemo_any_time> | |
| - The following are the traditional chemotherapy drugs you should look for: | |
| - Doxorubicin/Adriamycin | |
| - Carboplatin | |
| - Vinblastine | |
| - Chlorambucil/Leukeran | |
| - Lomustine/CCNU | |
| - Mitoxantrone | |
| - Cyclophosphamide/Cytoxan | |
| - Vinorelbine | |
| - Vincristine | |
| - CHOP protocol | |
| - Actinomycin | |
| - VAC Protocol | |
| - Tanovea | |
| - L-asparaginase | |
| - Melphalan | |
| - Satraplatin | |
| - Epirubicin | |
| - Neoplasene | |
| - MOPP Chemotherapy | |
| - Satraplatin metronomic | |
| - Gemcitabine/Gemzar | |
| - Fluorouracil (5-FU) | |
| - Laverdia | |
| - Temodar | |
| - Unspecified traditional chemo | |
| - No Traditional Chemo to-date | |
| - No traditional chemo reported - validated | |
| - Tamozolamide/Temodar | |
| - Unknown | |
| - Cisplatin | |
| - Mustargen | |
| - Procarbazine | |
| - Mitotane | |
| - other_cancer_treatments | |
| - Any other cancer treatments the patient has taken or has been prescribed, according to the list provided below. | |
| - Within the tags, put a list of all the other cancer treatments the patient has taken or has been prescribed as well as the date, if specified. | |
| - For example: | |
| <other_cancer_treatments> | |
| <reasoning>[REASONING]</reasoning> | |
| <treatment>Radiation Therapy</treatment> | |
| <date>2021-01-01</date> | |
| </other_cancer_treatments> | |
| - The following are the other cancer treatments you should look for: | |
| - Radiation Therapy | |
| - Palladia/Toceranib | |
| - Melanoma Vaccine (Oncept) | |
| - Electrochemotherapy | |
| - Masatinib | |
| - Autologous Vaccine/Torigen/Ardent | |
| - Lapatinib | |
| - I'm Yunity | |
| - Yunnan Baiyao | |
| - Previcox | |
| - Yale Vaccine | |
| - Rapamycin | |
| - Listeria Vaccine | |
| - Imatinib | |
| - Trametinib | |
| - Zoledronate | |
| - Dexrazoxane/Zinecard | |
| - Firocoxib | |
| - Olaparib | |
| - Dasatinib | |
| - Vorinostat | |
| - Mistletoe Therapy | |
| - EGFR Vaccine | |
| - No other cancer treatments reported - validated | |
| - Palbociclib | |
| - No other cancer treatments reported to-date | |
| - Sorafenib | |
| - Nanoparticle Infusion | |
| - Nanoparticle Laser | |
| - Laser Therapy | |
| - Stelfonta | |
| - Tanovea | |
| - T-Cell infusions | |
| - Losartan | |
| - Naltrexone | |
| - Immunoregulin | |
| - Papilloma Vaccine | |
| - Gilvetmab | |
| - Unknown | |
| - other_conmeds | |
| - Any other concomitant medications the patient has taken or has been prescribed. | |
| - Within the tags, put a list of all the other concomitant medications the patient has taken or has been prescribed as well as the date, if specified. | |
| - For example: | |
| <other_conmeds> | |
| <reasoning>[REASONING]</reasoning> | |
| <medication>Aspirin</medication> | |
| <date>2021-01-01</date> | |
| </other_conmeds> | |
| - The following are the other concomitant medications you should look for: | |
| - Piroxicam | |
| - Gabapentin | |
| - Carprofen/Rimadyl | |
| - Denamarin | |
| - Ursodiol | |
| - Clavamox | |
| - Cerenia/Maropitant | |
| - Ondansetron/Zofran | |
| - Meloxicam/Metacam | |
| - Pimobendan/Vetmedin | |
| - Losartan/Cozaar | |
| - Capromorelin/Entyce | |
| - Cetirizine/Zyrtec | |
| - Tacrolimus | |
| - Codeine | |
| - Telmisartan | |
| - Buprenorphine | |
| - Apoquel/Oclacitinib | |
| - Imuquin | |
| - Amlodipine | |
| - Loratadine/Claritin | |
| - Benazepril | |
| - Metronidazole/Flagyl | |
| - Prednisone | |
| - Adequan | |
| - Convenia | |
| - B12 Injections | |
| - Cisapride | |
| - Budesonide | |
| - Hepatoclear | |
| - Dasaquin | |
| - Cytopoint Injections | |
| - Glucosamine | |
| - Famotidine/Pepcid | |
| - Fish Oil | |
| - Omeprazole/Prilosec | |
| - Mirtazapine | |
| - Meclizine | |
| - Amantadine | |
| - Cortisone | |
| - Pentoxifylline | |
| - Ligaplex | |
| - Reishi Mushroom | |
| - Immune Builder | |
| - CAS Multimushroom | |
| - Ketamine Injections | |
| - Vitamin E | |
| - Trazadone | |
| - Phenobarbitol | |
| - Tylan Powder | |
| - Temaril-P | |
| - Acepromazine | |
| - Sulfasalazine | |
| - Keppra | |
| - Turkey Tail Mushroom | |
| - Furosemide/Lasix | |
| - Tramadol | |
| - Ciprofloxacin | |
| - Trilostane | |
| - Naturvet Vitapet Vitamins | |
| - Glycoflex | |
| - Entederm | |
| - Aluminum Hydroxide | |
| - Deramaxx | |
| - Doxycycline | |
| - Sulcrafate | |
| - Diphenhydramine | |
| - Fluoxetine | |
| - Nexgard | |
| - Reglan/Metoclopramide | |
| - Thyroxine | |
| - Clindamycin | |
| - Cephalexin | |
| - Enalapril | |
| - CBD | |
| - Denosyl | |
| - Galliprant | |
| - Methadone | |
| - Cobalequin | |
| - Azodyl | |
| - FortiFlora | |
| - Propectalin Paste | |
| - Dexamethasone | |
| - Ampicillin | |
| - Coriolus mushroom | |
| - Oxycodone | |
| - Cyproheptadine | |
| - Sotalol | |
| - Enrofloxacin/Baytril | |
| - Amiikacin | |
| - Misoprostol | |
| - Chlorhexadine | |
| - Neomycin | |
| - Visbiome | |
| - Tranexamic Acid | |
| - Proin | |
| - Tobramycin | |
| - Avmaquin | |
| - Cosyntropin (Cortosyn) | |
| - Vetoryl | |
| - Metoclopromide | |
| - Phenylpropanolamine HCl | |
| - Cosequin | |
| - Osteoflex | |
| - Hepato TruBenefits | |
| - Rx Clay | |
| - Metamucil Powder | |
| - Osteo-Tru Benefits | |
| - Oat Glycerite | |
| - Cholodin | |
| - Proviable | |
| - Supplements | |
| - Wuffles Joint Supplement | |
| - Firocoxib/Previcox | |
| - Tylosin | |
| - Barium Suspension | |
| - Optimmune Ointment | |
| - NeoPolyDex Solution | |
| - Endosorb | |
| - Augmentin | |
| - Butorphanol/Dolorex | |
| - Prazosin | |
| - Traumeel/T-Relief | |
| - Deracoxib | |
| - Triamcinolone | |
| - Probiotic | |
| - Hydrocodone | |
| - Lactulose | |
| - Methocarbamol | |
| - Cranberry Pills | |
| - Eye Meds | |
| - Levothyroxine | |
| - Calcitriol | |
| - TMS trimethoprim sulfamethoxazole | |
| - Allergy Antigen Injections | |
| - Propranolol | |
| - Flexadin | |
| - Interceptor | |
| - Thorn SAT | |
| - Megaflora | |
| - Pregabalin | |
| - Canalevia | |
| - Cefpodoxime | |
| - Melatonin | |
| - Phenylephrine | |
| - Amoxicillin | |
| - Arnica/T-Relief | |
| - Aminocaproic Acid | |
| - Fluconazole | |
| - Gastrafate | |
| - Silver Sulfadiazine | |
| - Mupirocin | |
| - Marbofloxacin/Zeniquin | |
| - Psyllium Husk | |
| - Chlorpheniramine | |
| - Tagamet | |
| - Multi-vitamin | |
| - D-mannose/cranberry | |
| - Darbepoetin | |
| - Soloxine | |
| - Thuja Occidentalis | |
| - Pantoprazole | |
| - Normosol-R | |
| - Nitrofurantoin | |
| - Sildenafil | |
| - Hydromorphone | |
| - Terbinafine | |
| - Sucralfate | |
| - Clopidogrel | |
| - EndoBlend | |
| - Omega Benefts | |
| - Dexmedetomidine | |
| - Levetiracetam | |
| - Diethylstilbesterol | |
| - Nattokinase | |
| - D3 supplement | |
| - Modified Chai Hu Jia Long Gu Mu Li Tang supplement | |
| - Power mushrooms | |
| - super greens supplement | |
| - Sertraline/Zoloft | |
| - Mushroom Supplement | |
| - Simparica Trio/Sarolaner, moxidectin, and pyrantel | |
| - 5DMM | |
| - Joint Supplements | |
| - Vetericyn | |
| - Milk Thistle | |
| - S-Adenosyl methionine | |
| - Cimetidine | |
| - Silver Entro Dex | |
| - Desmopressin | |
| - Alpha lipoic acid | |
| - Unasyn | |
| - Panacur/Fenbendazole | |
| - Xiao Chai Hu Tang | |
| - Incurin | |
| - Dextrose | |
| - Fresh Frozen Plasma | |
| - Pamidronate Infusion | |
| - Curcumin | |
| - Diazoxide | |
| - Clavacillin | |
| - Tetracycline | |
| - B9 Folic Acid | |
| - Prednisolone | |
| - Cyclosporine | |
| - Ketaconazole | |
| - Novolin-N | |
| - Zonisamide | |
| - Gentamicin/Phenylephrine nasal drops | |
| - Stool Softener | |
| - Amitriptyline | |
| - Moxifloxacin | |
| - Gemfibrozil | |
| - Taurine | |
| - Mometamax | |
| - Heartgard | |
| - Green Lipped Mussel Powder | |
| - Chlorella Powder | |
| - BioSponge | |
| - Folate | |
| - Cobalamine | |
| - Diazepam | |
| - GenOne | |
| - Phenoxybenzamine | |
| - Flumethrin and Imidacloprid/Seresto | |
| - Forte Ion Gut Health | |
| - Dispel Stasis | |
| - Blood Remaker + Immune Support with Mushrooms | |
| - Pet Tab | |
| - Omega 3 Supplement | |
| - PIQRAY/Alpelisib | |
| - Vitamin K | |
| - Quadriplex | |
| - Colchicine | |
| - Thyro-Tabs | |
| - Alprazolam/Xanax | |
| - Spironolactone | |
| - Vetstarch | |
| - Enoxaparin | |
| - Diclofenac/Voltaren | |
| - Routin | |
| - Doxepin | |
| - Erythromycin | |
| - Keterolac | |
| - Tromethamine | |
| - Cyclosporine/Atopica | |
| - Pantoea agglomerans | |
| - Oxybutynin | |
| - Amikacin | |
| - Levemir | |
| - Apocaps | |
| - Life Gold | |
| - Red Clover Blossoms powder | |
| - Modified Citrus Pectin | |
| - Epinephrine | |
| - Vitamin C | |
| - Azathioprine | |
| - RBC Transfusion | |
| - Bactrim/sulfamethoxazole & trimethoprim | |
| - Pet ReLeaf | |
| - NeoPolyBac Ophthalmic | |
| - Antibiotics (unspecified) | |
| - Azithromycin | |
| - Alendronate | |
| - Cafazolin | |
| - Diltiazem | |
| - Mexiletine | |
| - Pure IP6 | |
| - VetInsulin | |
| - Herbal Supplements | |
| - San Qi Formula | |
| - Amnivast | |
| - Crananidin | |
| - Movoflex | |
| - Lidocaine | |
| - Tamsulosin/Flowmax | |
| - Bedinvetmab/Librela | |
| - Calcium Carbonate/Tums | |
| - Dermatrophin | |
| - Temozolomide | |
| - Midazolam | |
| - Anipryl | |
| - Theophylline | |
| - Sodium Bicarbonate | |
| - RenaKare | |
| - Hydroxazine | |
| - Zincard/Dexrazoxane | |
| - Animax | |
| - Pro-Pectalin | |
| - Ellevet CHews | |
| - Cordyceps | |
| - Benadryl | |
| - Albon | |
| - Robenacoxib (Onsior) | |
| - Lysine | |
| - Myos muscle building supplement | |
| - Iron injections | |
| - Xyzal (L-Cefirizine) | |
| - Clavacillin | |
| - Loperamide | |
| - Theracurmin | |
| - Quercetin Phytosome | |
| - Anti-Neoplasia | |
| - Fiber Supplement | |
| - Zinc Supplement | |
| - surgery | |
| - Whether surgical resection of the tumor was performed. | |
| - For example: | |
| <surgery> | |
| <reasoning>[REASONING]</reasoning> | |
| <resection>Yes</resection> | |
| </surgery> | |
| - surgery_outcome | |
| - The outcome of the surgery. | |
| - For example: | |
| <surgery_outcome> | |
| <reasoning>[REASONING]</reasoning> | |
| <outcome>Complete Resection</outcome> | |
| </surgery_outcome> | |
| - The following are the possible outcomes of the surgery: | |
| - Completely Excised | |
| - Incompletely Excised | |
| - Unknown | |
| - metastasis_at_time_of_diagnosis | |
| - Whether the cancer has spread to other parts of the body. | |
| - For example: | |
| <metastasis_at_time_of_diagnosis> | |
| <metastasis>Yes</metastasis> | |
| </metastasis_at_time_of_diagnosis> | |
| - The following are the possible outcomes of the surgery: | |
| - Yes | |
| - No | |
| - Unknown | |
| - compounding_pharmacy | |
| - If a compounding pharmacy is listed, extract the name of the pharmacy. Do not include "fidocure" as a pharmacy name. | |
| - For example: | |
| <compounding_pharmacy> | |
| <reasoning>[REASONING]</reasoning> | |
| <pharmacy>CVS Pharmacy</pharmacy> | |
| </compounding_pharmacy> | |
| - adverse_effects | |
| - Any adverse effects the patient has experienced from the medications. For each adverse effect, extract the following fields: | |
| - The name of the medication | |
| - The dosage of the medication | |
| - The date the adverse effect started | |
| - A description of the adverse effect | |
| - For example: | |
| <adverse_effects> | |
| <reasoning>[REASONING]</reasoning> | |
| <medication>Doxorubicin/Adriamycin</medication> | |
| <dosage>20 mg/kg</dosage> | |
| <date>2021-01-01</date> | |
| <description>Nausea</description> | |
| </adverse_effects> | |
| - date_of_death | |
| - The date of death of the patient, if it is known. | |
| - For example: | |
| <date_of_death> | |
| <reasoning>[REASONING]</reasoning> | |
| <date>2021-01-01</date> | |
| </date_of_death> | |
| - weight | |
| - The weight of the patient, if it is known. Convert all weights to kilograms. | |
| - For example: | |
| <weight> | |
| <reasoning>[REASONING]</reasoning> | |
| <weight>20 kg</weight> | |
| </weight> | |
| """ |