Update app.py

app.py

@@ -925,7 +925,9 @@ def create_research_interface():
         # Connect the benchmark
         benchmark_outputs = run_button.click(
             run_benchmark,
-            inputs=[compression_types, seq_length, eval_samples,
+            inputs=[compression_types, model_selection, dataset_selection,
+                   test_seq_lengths, downstream_tasks, baseline_comparisons,
+                   seq_length, eval_samples,
                    spg_decay_rate, spg_enable_adaptive, spg_target_ppl,
                    enhanced_enable_two_stage, enhanced_stage1_ratio, enhanced_stage2_ratio,
                    enhanced_enable_head_compression, enhanced_enable_progressive,
@@ -938,7 +940,7 @@ def create_research_interface():
                    min_tokens_for_stability, stage_compression_min, stage_compression_max,
                    sequence_compression_ratio, head_compression_ratio,
                    generate_latex, n_bootstrap, n_seeds, enable_proving,
-                   enable_ratio_sweep, ratio_sweep_points],
+                   enable_ratio_sweep, ratio_sweep_points, enable_publication_mode],
             outputs=[results_table, summary_output, latex_output, json_output, 
                     proof_bundle_file, plots_image, tradeoff_plots, tradeoff_json]
         )