Spaces:
Sleeping
Sleeping
Update app.py
Browse files
app.py
CHANGED
|
@@ -1,14 +1,17 @@
|
|
| 1 |
-
#
|
| 2 |
import gradio as gr
|
| 3 |
|
| 4 |
-
# numpy is used for numerical operations
|
| 5 |
import numpy as np
|
| 6 |
|
| 7 |
-
#
|
| 8 |
-
|
| 9 |
-
from ai_edge_litert.interpreter import Interpreter
|
| 10 |
|
| 11 |
-
#
|
|
|
|
|
|
|
|
|
|
|
|
|
| 12 |
from PIL import Image
|
| 13 |
|
| 14 |
|
|
@@ -16,58 +19,48 @@ from PIL import Image
|
|
| 16 |
# LOAD THE MODEL
|
| 17 |
# ------------------------------------
|
| 18 |
|
| 19 |
-
#
|
| 20 |
-
#
|
| 21 |
-
|
| 22 |
-
|
| 23 |
-
# This allocates memory for the model's input and output tensors
|
| 24 |
-
# You must always call this before running inference
|
| 25 |
-
interpreter.allocate_tensors()
|
| 26 |
-
|
| 27 |
-
# This gets the details of the input tensor
|
| 28 |
-
# It tells us the expected shape, data type, and index of the input
|
| 29 |
-
input_details = interpreter.get_input_details()
|
| 30 |
-
|
| 31 |
-
# This gets the details of the output tensor
|
| 32 |
-
# It tells us the shape and index of the output so we can read predictions
|
| 33 |
-
output_details = interpreter.get_output_details()
|
| 34 |
|
| 35 |
-
#
|
| 36 |
-
#
|
| 37 |
-
|
| 38 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 39 |
|
| 40 |
-
#
|
| 41 |
-
#
|
| 42 |
-
|
|
|
|
| 43 |
|
| 44 |
-
|
| 45 |
-
|
| 46 |
-
# we convert it to a PIL Image object so we can resize it easily
|
| 47 |
-
# we also make sure it is in RGB format (3 channels: red, green, blue)
|
| 48 |
-
img = Image.fromarray(image).convert("RGB")
|
| 49 |
|
| 50 |
-
|
| 51 |
-
|
| 52 |
-
|
| 53 |
|
| 54 |
-
|
| 55 |
-
# dtype=np.float32 is important because the model expects 32-bit floats
|
| 56 |
-
img = np.array(img, dtype=np.float32)
|
| 57 |
|
| 58 |
-
|
| 59 |
-
|
| 60 |
-
# this is called normalization and it helps the model perform correctly
|
| 61 |
-
img = img / 255.0
|
| 62 |
|
| 63 |
-
|
| 64 |
-
|
| 65 |
-
|
| 66 |
-
|
| 67 |
-
img = np.expand_dims(img, axis=0)
|
| 68 |
|
| 69 |
-
|
| 70 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
| 71 |
|
| 72 |
|
| 73 |
# ------------------------------------
|
|
@@ -75,53 +68,40 @@ def preprocess_image(image):
|
|
| 75 |
# ------------------------------------
|
| 76 |
|
| 77 |
def classify_image(image):
|
| 78 |
-
# if the user
|
| 79 |
-
# we return None for the scores and a warning message
|
| 80 |
if image is None:
|
| 81 |
return None, "Please upload an image first"
|
| 82 |
|
| 83 |
-
#
|
| 84 |
-
|
| 85 |
-
|
| 86 |
-
# we load the preprocessed image into the model's input tensor
|
| 87 |
-
# input_details[0]['index'] gives us the correct tensor index to write to
|
| 88 |
-
interpreter.set_tensor(input_details[0]['index'], processed)
|
| 89 |
-
|
| 90 |
-
# this actually runs the model on the input we just loaded
|
| 91 |
-
interpreter.invoke()
|
| 92 |
|
| 93 |
-
#
|
| 94 |
-
#
|
| 95 |
-
|
| 96 |
|
| 97 |
-
#
|
| 98 |
-
|
| 99 |
-
|
|
|
|
| 100 |
|
| 101 |
-
#
|
| 102 |
-
|
| 103 |
-
|
| 104 |
|
| 105 |
-
|
| 106 |
-
prob_cervix = float(output[0][1])
|
| 107 |
|
| 108 |
-
#
|
| 109 |
-
# whichever class has the higher probability is our prediction
|
| 110 |
if prob_cervix > prob_non_cervix:
|
| 111 |
prediction_text = "Cervix Detected"
|
| 112 |
else:
|
| 113 |
prediction_text = "Non-Cervix"
|
| 114 |
|
| 115 |
-
#
|
| 116 |
-
# gradio's Label component accepts this format and displays it as a bar chart
|
| 117 |
-
# we round to 4 decimal places to keep the display clean
|
| 118 |
scores = {
|
| 119 |
"Cervix": round(prob_cervix, 4),
|
| 120 |
-
"Non-Cervix": round(prob_non_cervix, 4)
|
| 121 |
}
|
| 122 |
|
| 123 |
-
# we return both the scores dictionary and the prediction text
|
| 124 |
-
# these map to the two output components in the gradio interface
|
| 125 |
return scores, prediction_text
|
| 126 |
|
| 127 |
|
|
@@ -129,11 +109,8 @@ def classify_image(image):
|
|
| 129 |
# GRADIO USER INTERFACE
|
| 130 |
# ------------------------------------
|
| 131 |
|
| 132 |
-
# gr.Blocks gives us full control over the layout of the interface
|
| 133 |
-
# theme=gr.themes.Soft() gives it a clean and soft visual style
|
| 134 |
with gr.Blocks(theme=gr.themes.Soft()) as app:
|
| 135 |
|
| 136 |
-
# gr.Markdown renders formatted text at the top of the page
|
| 137 |
gr.Markdown("""
|
| 138 |
# Gatekeeper Model
|
| 139 |
### Cervix Image Binary Classifier
|
|
@@ -141,58 +118,35 @@ with gr.Blocks(theme=gr.themes.Soft()) as app:
|
|
| 141 |
---
|
| 142 |
""")
|
| 143 |
|
| 144 |
-
# gr.Row arranges the components inside it horizontally side by side
|
| 145 |
with gr.Row():
|
| 146 |
|
| 147 |
-
# the first column holds the input components on the left side
|
| 148 |
with gr.Column():
|
| 149 |
-
|
| 150 |
-
# gr.Image creates an image upload box
|
| 151 |
-
# type="numpy" means the image will be passed to our function
|
| 152 |
-
# as a numpy array which is what we need for preprocessing
|
| 153 |
input_image = gr.Image(
|
| 154 |
label="Upload Image",
|
| 155 |
type="numpy"
|
| 156 |
)
|
| 157 |
-
|
| 158 |
-
# this is the main button the user clicks to run the model
|
| 159 |
-
# variant="primary" makes it stand out visually as the main action
|
| 160 |
-
# size="lg" makes it large and easy to click
|
| 161 |
classify_btn = gr.Button(
|
| 162 |
"Run Classification",
|
| 163 |
variant="primary",
|
| 164 |
size="lg"
|
| 165 |
)
|
| 166 |
-
|
| 167 |
-
# this is a secondary button to reset the interface
|
| 168 |
-
# variant="secondary" gives it a less prominent visual style
|
| 169 |
clear_btn = gr.Button(
|
| 170 |
"Clear",
|
| 171 |
variant="secondary",
|
| 172 |
size="sm"
|
| 173 |
)
|
| 174 |
|
| 175 |
-
# the second column holds the output components on the right side
|
| 176 |
with gr.Column():
|
| 177 |
-
|
| 178 |
-
# gr.Label displays the confidence scores as a visual bar chart
|
| 179 |
-
# num_top_classes=2 tells it to show both classes
|
| 180 |
output_scores = gr.Label(
|
| 181 |
label="Confidence Scores",
|
| 182 |
num_top_classes=2
|
| 183 |
)
|
| 184 |
-
|
| 185 |
-
# gr.Textbox displays the final prediction as plain text
|
| 186 |
-
# interactive=False means the user cannot edit it
|
| 187 |
-
# it is read-only output only
|
| 188 |
output_text = gr.Textbox(
|
| 189 |
label="Prediction",
|
| 190 |
interactive=False,
|
| 191 |
text_align="center"
|
| 192 |
)
|
| 193 |
|
| 194 |
-
# this adds a reference table at the bottom so users understand
|
| 195 |
-
# what the two class indices mean
|
| 196 |
gr.Markdown("""
|
| 197 |
---
|
| 198 |
| Index | Label | Meaning |
|
|
@@ -205,29 +159,16 @@ with gr.Blocks(theme=gr.themes.Soft()) as app:
|
|
| 205 |
It is not intended for clinical diagnosis or medical use.
|
| 206 |
""")
|
| 207 |
|
| 208 |
-
# ------------------------------------
|
| 209 |
-
# BUTTON ACTIONS
|
| 210 |
-
# ------------------------------------
|
| 211 |
-
|
| 212 |
-
# this connects the classify button to the classify_image function
|
| 213 |
-
# inputs tells gradio which component to read from
|
| 214 |
-
# outputs tells gradio which components to write the results to
|
| 215 |
classify_btn.click(
|
| 216 |
fn=classify_image,
|
| 217 |
inputs=input_image,
|
| 218 |
outputs=[output_scores, output_text]
|
| 219 |
)
|
| 220 |
|
| 221 |
-
# this connects the clear button to a simple lambda function
|
| 222 |
-
# a lambda is a small anonymous function defined in one line
|
| 223 |
-
# it returns None for the image, None for scores, and empty string for text
|
| 224 |
-
# this effectively resets all three components back to their empty state
|
| 225 |
clear_btn.click(
|
| 226 |
fn=lambda: (None, None, ""),
|
| 227 |
inputs=None,
|
| 228 |
outputs=[input_image, output_scores, output_text]
|
| 229 |
)
|
| 230 |
|
| 231 |
-
# this starts the gradio web server and launches the interface
|
| 232 |
-
# on hugging face spaces this is called automatically
|
| 233 |
app.launch()
|
|
|
|
| 1 |
+
# gradio is the library used to build the web interface
|
| 2 |
import gradio as gr
|
| 3 |
|
| 4 |
+
# numpy is used for numerical operations
|
| 5 |
import numpy as np
|
| 6 |
|
| 7 |
+
# torch is the core PyTorch library used to run the model
|
| 8 |
+
import torch
|
|
|
|
| 9 |
|
| 10 |
+
# torchvision provides the ResNet50 architecture and image transforms
|
| 11 |
+
import torchvision.transforms as transforms
|
| 12 |
+
from torchvision import models
|
| 13 |
+
|
| 14 |
+
# PIL is used for image loading and conversion
|
| 15 |
from PIL import Image
|
| 16 |
|
| 17 |
|
|
|
|
| 19 |
# LOAD THE MODEL
|
| 20 |
# ------------------------------------
|
| 21 |
|
| 22 |
+
# we detect whether a GPU is available and fall back to CPU if not
|
| 23 |
+
# hugging face free tier runs on CPU so this will almost always be cpu
|
| 24 |
+
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
|
| 25 |
+
print(f"Running on: {device}")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 26 |
|
| 27 |
+
# we recreate the ResNet50 architecture
|
| 28 |
+
# weights=None because we will load our own trained weights below
|
| 29 |
+
model = models.resnet50(weights=None)
|
| 30 |
|
| 31 |
+
# the original ResNet50 outputs 1000 classes (ImageNet)
|
| 32 |
+
# we replace the final fully connected layer to output 2 classes:
|
| 33 |
+
# class 0 = Non-Cervix, class 1 = Cervix
|
| 34 |
+
model.fc = torch.nn.Linear(model.fc.in_features, 2)
|
| 35 |
|
| 36 |
+
# we load the saved weights from the .pth file
|
| 37 |
+
# map_location=device ensures it loads correctly even without a GPU
|
| 38 |
+
state_dict = torch.load("best_gatekeeper_v2.pth", map_location=device)
|
| 39 |
+
model.load_state_dict(state_dict)
|
| 40 |
|
| 41 |
+
# we move the model to the correct device (CPU or GPU)
|
| 42 |
+
model = model.to(device)
|
|
|
|
|
|
|
|
|
|
| 43 |
|
| 44 |
+
# we set the model to evaluation mode
|
| 45 |
+
# this disables dropout and batch normalisation training behaviour
|
| 46 |
+
model.eval()
|
| 47 |
|
| 48 |
+
print("Gatekeeper model loaded successfully")
|
|
|
|
|
|
|
| 49 |
|
| 50 |
+
# this is the image size ResNet50 expects
|
| 51 |
+
INPUT_SIZE = 224
|
|
|
|
|
|
|
| 52 |
|
| 53 |
+
# these are the standard ImageNet normalisation values
|
| 54 |
+
# ResNet50 was pretrained on ImageNet so we use the same values
|
| 55 |
+
IMAGENET_MEAN = [0.485, 0.456, 0.406]
|
| 56 |
+
IMAGENET_STD = [0.229, 0.224, 0.225]
|
|
|
|
| 57 |
|
| 58 |
+
# we define the preprocessing pipeline using torchvision transforms
|
| 59 |
+
preprocess = transforms.Compose([
|
| 60 |
+
transforms.Resize((INPUT_SIZE, INPUT_SIZE)),
|
| 61 |
+
transforms.ToTensor(), # converts [0,255] → [0,1]
|
| 62 |
+
transforms.Normalize(mean=IMAGENET_MEAN, std=IMAGENET_STD),
|
| 63 |
+
])
|
| 64 |
|
| 65 |
|
| 66 |
# ------------------------------------
|
|
|
|
| 68 |
# ------------------------------------
|
| 69 |
|
| 70 |
def classify_image(image):
|
| 71 |
+
# if the user submits without an image return a warning
|
|
|
|
| 72 |
if image is None:
|
| 73 |
return None, "Please upload an image first"
|
| 74 |
|
| 75 |
+
# convert the numpy array from gradio to a PIL Image in RGB format
|
| 76 |
+
img = Image.fromarray(image).convert("RGB")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 77 |
|
| 78 |
+
# apply the preprocessing pipeline and add a batch dimension
|
| 79 |
+
# unsqueeze(0) changes shape from (3, 224, 224) to (1, 3, 224, 224)
|
| 80 |
+
tensor = preprocess(img).unsqueeze(0).to(device)
|
| 81 |
|
| 82 |
+
# run inference without computing gradients (saves memory and is faster)
|
| 83 |
+
with torch.no_grad():
|
| 84 |
+
output = model(tensor) # raw logits shape: (1, 2)
|
| 85 |
+
probs = torch.softmax(output, dim=1)[0] # convert to probabilities
|
| 86 |
|
| 87 |
+
# extract individual class probabilities as plain Python floats
|
| 88 |
+
prob_non_cervix = float(probs[0])
|
| 89 |
+
prob_cervix = float(probs[1])
|
| 90 |
|
| 91 |
+
print(f"Non-Cervix: {prob_non_cervix:.4f} | Cervix: {prob_cervix:.4f}")
|
|
|
|
| 92 |
|
| 93 |
+
# determine the final prediction label
|
|
|
|
| 94 |
if prob_cervix > prob_non_cervix:
|
| 95 |
prediction_text = "Cervix Detected"
|
| 96 |
else:
|
| 97 |
prediction_text = "Non-Cervix"
|
| 98 |
|
| 99 |
+
# build a dictionary for gradio's Label component (displays as bar chart)
|
|
|
|
|
|
|
| 100 |
scores = {
|
| 101 |
"Cervix": round(prob_cervix, 4),
|
| 102 |
+
"Non-Cervix": round(prob_non_cervix, 4),
|
| 103 |
}
|
| 104 |
|
|
|
|
|
|
|
| 105 |
return scores, prediction_text
|
| 106 |
|
| 107 |
|
|
|
|
| 109 |
# GRADIO USER INTERFACE
|
| 110 |
# ------------------------------------
|
| 111 |
|
|
|
|
|
|
|
| 112 |
with gr.Blocks(theme=gr.themes.Soft()) as app:
|
| 113 |
|
|
|
|
| 114 |
gr.Markdown("""
|
| 115 |
# Gatekeeper Model
|
| 116 |
### Cervix Image Binary Classifier
|
|
|
|
| 118 |
---
|
| 119 |
""")
|
| 120 |
|
|
|
|
| 121 |
with gr.Row():
|
| 122 |
|
|
|
|
| 123 |
with gr.Column():
|
|
|
|
|
|
|
|
|
|
|
|
|
| 124 |
input_image = gr.Image(
|
| 125 |
label="Upload Image",
|
| 126 |
type="numpy"
|
| 127 |
)
|
|
|
|
|
|
|
|
|
|
|
|
|
| 128 |
classify_btn = gr.Button(
|
| 129 |
"Run Classification",
|
| 130 |
variant="primary",
|
| 131 |
size="lg"
|
| 132 |
)
|
|
|
|
|
|
|
|
|
|
| 133 |
clear_btn = gr.Button(
|
| 134 |
"Clear",
|
| 135 |
variant="secondary",
|
| 136 |
size="sm"
|
| 137 |
)
|
| 138 |
|
|
|
|
| 139 |
with gr.Column():
|
|
|
|
|
|
|
|
|
|
| 140 |
output_scores = gr.Label(
|
| 141 |
label="Confidence Scores",
|
| 142 |
num_top_classes=2
|
| 143 |
)
|
|
|
|
|
|
|
|
|
|
|
|
|
| 144 |
output_text = gr.Textbox(
|
| 145 |
label="Prediction",
|
| 146 |
interactive=False,
|
| 147 |
text_align="center"
|
| 148 |
)
|
| 149 |
|
|
|
|
|
|
|
| 150 |
gr.Markdown("""
|
| 151 |
---
|
| 152 |
| Index | Label | Meaning |
|
|
|
|
| 159 |
It is not intended for clinical diagnosis or medical use.
|
| 160 |
""")
|
| 161 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 162 |
classify_btn.click(
|
| 163 |
fn=classify_image,
|
| 164 |
inputs=input_image,
|
| 165 |
outputs=[output_scores, output_text]
|
| 166 |
)
|
| 167 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 168 |
clear_btn.click(
|
| 169 |
fn=lambda: (None, None, ""),
|
| 170 |
inputs=None,
|
| 171 |
outputs=[input_image, output_scores, output_text]
|
| 172 |
)
|
| 173 |
|
|
|
|
|
|
|
| 174 |
app.launch()
|