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Update Dockerfile

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  1. Dockerfile +3 -12
Dockerfile CHANGED
@@ -1,16 +1,7 @@
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- FROM rocker/shiny-verse:latest
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- WORKDIR /code
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-
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- # Install stable packages from CRAN
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- RUN install2.r --error \
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- ggExtra \
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- shiny
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-
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- # Install development packages from GitHub
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- RUN installGithub.r \
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- rstudio/bslib \
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- rstudio/httpuv
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  COPY . .
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+ FROM bioconductor/bioconductor_docker:RELEASE_3_19
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+ RUN R -e 'BiocManager::install(c("shiny", "shinydashboard", "shinyWidgets", "shinyFiles", "DT", "ggplot2", "dplyr", "tibble", "htmlwidgets", "plotly", "heatmaply", "magrittr", "gprofiler2", "openxlsx"))'
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+ RUN R -e 'BiocManager::install("genefilter")'
 
 
 
 
 
 
 
 
 
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  COPY . .
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