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Refactor code structure for improved readability and maintainability
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.env
# Always ignore Python cache files
__pycache__/
**/__pycache__/
*.pyc
*.pyo
*.pyd
.Python
# SQLite and DB files
*.db
*.sqlite
# Output files
outputs/*.txt
outputs/*.json
# Log files
*.log
# IDE and OS files
.vscode/
.idea/
.DS_Store
# Jupyter Notebook checkpoints
.ipynb_checkpoints/
# Virtual environments
.venv/
venv/
# MacOS system files
.AppleDouble
.LSOverride
# Test and coverage outputs
htmlcov/
.coverage
.mypy_cache/
.pytest_cache/
coverage.xml
# Misc
*.egg-info/
dist/
build/
template_basic/rag_input_documents/csv/*
template_basic/rag_input_documents/markdown/*
template_basic/rag_input_documents/pdf/*
template_basic/rag_storage/*
.github/copilot-instructions.md
.github/settings.json