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README.md
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@@ -55,12 +55,16 @@ streamlit run clinfly_app_st.py
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For processing multiple reports with offline options, use the command line interface provided by `clinfly_app_cli.py`.
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The input should be a TSV .
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```
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Report_id_1 Doe John Report text
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...
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Report_id_X Doe John Report text
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```
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Outputs will be placed in the `results` folder according to the file extension, using first three columns in filename.
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- The deidentify report will be generated and placed in the `results/Reports` folder.
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For processing multiple reports with offline options, use the command line interface provided by `clinfly_app_cli.py`.
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The input should be a TSV .tsv file structured as follows (see `data/test.tsv` for an example):
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```
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Report_id_1 Doe John Report text
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...
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Report_id_X Doe John Report text
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```
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You can also put a symlink to a pdf file (see `data/test_pdf.tsv` for an example)
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```
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Report_id_X Doe John Example.pdf
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```
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Outputs will be placed in the `results` folder according to the file extension, using first three columns in filename.
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- The deidentify report will be generated and placed in the `results/Reports` folder.
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