Spaces:
Running
Running
Upload self-contained KGVis Gradio Space
Browse files- README.md +27 -9
- app.py +540 -0
- kgvis/__init__.py +1 -0
- kgvis/plot.py +520 -0
- kgvis/schema/__init__.py +28 -0
- kgvis/schema/base.py +73 -0
- kgvis/schema/v1.py +87 -0
- requirements.txt +4 -0
README.md
CHANGED
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@@ -1,14 +1,32 @@
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---
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title:
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emoji: 🚀
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colorFrom: blue
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colorTo: red
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sdk: gradio
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sdk_version: 6.16.0
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python_version: '3.13'
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app_file: app.py
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pinned: false
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short_description: Visualisation Tool for Frame2kg Outputs
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---
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-
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---
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title: KGVis
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sdk: gradio
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app_file: app.py
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---
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# KGVis
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Standalone Hugging Face Space export for the KGVis visualizer.
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Push the contents of this directory to the root of a Hugging Face Space
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repository. The Space expects `app.py`, `requirements.txt`, and `kgvis/` at the
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repository root.
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This Space contains the minimal local `kgvis` package files needed by the
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Gradio app. The package does not need to be published to PyPI because the
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`kgvis/` directory is included directly in this repository.
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## Included
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- `app.py`: Gradio upload-only visualizer.
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- `requirements.txt`: external Python dependencies for Spaces.
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- `kgvis/plot.py`: Plotly figure construction.
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- `kgvis/schema/`: graph schema parsing.
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## Not Included
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- No Dash app files.
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- No storage helpers.
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- No saved data, uploaded images, or local test datasets.
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Upload one graph JSON file and, optionally, one matching image file in the UI.
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app.py
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@@ -0,0 +1,540 @@
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from __future__ import annotations
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import base64
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import json
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import mimetypes
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from pathlib import Path
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from typing import Any
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import gradio as gr
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from PIL import Image
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from kgvis.plot import build_figure, empty_figure
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from kgvis.schema import graph_from_dict, graph_to_dict, parse_graph
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DEFAULT_TOGGLES = ["nodes", "edges", "node_labels", "edge_labels"]
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CSS = """
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.kgvis-shell { max-width: 1600px; margin: 0 auto; }
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.kgvis-status textarea { font-family: ui-monospace, SFMono-Regular, Menlo, monospace; }
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.kgvis-plot { min-height: 640px; }
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"""
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def _path_from_upload(upload: Any) -> Path | None:
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if upload is None:
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return None
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if isinstance(upload, (str, Path)):
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return Path(upload)
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if isinstance(upload, dict):
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for key in ("path", "name"):
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if upload.get(key):
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return Path(upload[key])
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name = getattr(upload, "name", None)
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if name:
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return Path(name)
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return None
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def _upload_name(upload: Any, path: Path) -> str:
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if isinstance(upload, dict):
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return str(upload.get("orig_name") or upload.get("name") or path.name)
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return str(getattr(upload, "orig_name", None) or path.name)
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def _image_state_from_upload(upload: Any) -> dict[str, Any]:
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| 47 |
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path = _path_from_upload(upload)
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| 48 |
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if path is None:
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| 49 |
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raise ValueError("No image file was provided.")
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| 50 |
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if not path.exists():
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| 51 |
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raise FileNotFoundError(f"Uploaded image not found: {path}")
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| 52 |
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| 53 |
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with Image.open(path) as img:
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| 54 |
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width, height = img.size
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| 55 |
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if height == 0:
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| 56 |
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raise ValueError("Image height is zero.")
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| 57 |
+
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| 58 |
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mime, _ = mimetypes.guess_type(path.name)
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| 59 |
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if not mime:
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mime = "image/png"
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| 61 |
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encoded = base64.b64encode(path.read_bytes()).decode("ascii")
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| 62 |
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return {
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| 63 |
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"name": _upload_name(upload, path),
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| 64 |
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"data_uri": f"data:{mime};base64,{encoded}",
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| 65 |
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"aspect": width / height,
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| 66 |
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}
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| 67 |
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| 68 |
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def _load_graph_upload(upload: Any) -> tuple[dict[str, Any], dict[str, Any], str]:
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| 70 |
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path = _path_from_upload(upload)
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| 71 |
+
if path is None:
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| 72 |
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raise ValueError("No JSON file was provided.")
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| 73 |
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if not path.exists():
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| 74 |
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raise FileNotFoundError(f"Uploaded JSON not found: {path}")
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| 75 |
+
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| 76 |
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raw = json.loads(path.read_text(encoding="utf-8"))
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| 77 |
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graph = parse_graph(raw)
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return graph_to_dict(graph), raw, _upload_name(upload, path)
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def _node_choices(graph_payload: dict[str, Any] | None) -> list[tuple[str, str]]:
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| 82 |
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if not graph_payload:
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return []
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| 84 |
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graph = graph_from_dict(graph_payload)
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| 85 |
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return [
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| 86 |
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(f"{node.label or node.id} ({node.id})", node.id)
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| 87 |
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for node in graph.nodes
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| 88 |
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if node.id
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| 89 |
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]
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+
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| 91 |
+
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| 92 |
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def _summary(graph_payload: dict[str, Any] | None, graph_name: str | None = None) -> str:
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if not graph_payload:
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return "No graph loaded."
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| 95 |
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graph = graph_from_dict(graph_payload)
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| 96 |
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name = f"`{graph_name}`: " if graph_name else ""
|
| 97 |
+
schema = graph.meta.get("schema", "unknown")
|
| 98 |
+
return f"{name}{len(graph.nodes)} nodes, {len(graph.edges)} edges (schema: {schema})"
|
| 99 |
+
|
| 100 |
+
|
| 101 |
+
def _dangling_markdown(graph_payload: dict[str, Any] | None) -> str:
|
| 102 |
+
if not graph_payload:
|
| 103 |
+
return "Dangling edges: 0"
|
| 104 |
+
graph = graph_from_dict(graph_payload)
|
| 105 |
+
node_ids = {node.id for node in graph.nodes}
|
| 106 |
+
dangling = [
|
| 107 |
+
edge
|
| 108 |
+
for edge in graph.edges
|
| 109 |
+
if edge.source not in node_ids or edge.target not in node_ids
|
| 110 |
+
]
|
| 111 |
+
if not dangling:
|
| 112 |
+
return "Dangling edges: 0"
|
| 113 |
+
lines = [f"Dangling edges: {len(dangling)}"]
|
| 114 |
+
lines.extend(
|
| 115 |
+
f"- `{edge.predicate}`: `{edge.source}` -> `{edge.target}`"
|
| 116 |
+
for edge in dangling
|
| 117 |
+
)
|
| 118 |
+
return "\n".join(lines)
|
| 119 |
+
|
| 120 |
+
|
| 121 |
+
def _edge_rows(graph_payload: dict[str, Any] | None) -> list[list[str]]:
|
| 122 |
+
if not graph_payload:
|
| 123 |
+
return []
|
| 124 |
+
graph = graph_from_dict(graph_payload)
|
| 125 |
+
node_ids = {node.id for node in graph.nodes}
|
| 126 |
+
return [
|
| 127 |
+
[
|
| 128 |
+
edge.source,
|
| 129 |
+
edge.predicate,
|
| 130 |
+
edge.target,
|
| 131 |
+
"yes" if edge.source not in node_ids or edge.target not in node_ids else "no",
|
| 132 |
+
]
|
| 133 |
+
for edge in graph.edges
|
| 134 |
+
]
|
| 135 |
+
|
| 136 |
+
|
| 137 |
+
def _node_details(
|
| 138 |
+
graph_payload: dict[str, Any] | None,
|
| 139 |
+
selected_node_id: str | None,
|
| 140 |
+
) -> dict[str, Any]:
|
| 141 |
+
if not graph_payload:
|
| 142 |
+
return {"message": "No graph loaded."}
|
| 143 |
+
if not selected_node_id:
|
| 144 |
+
return {"message": "Select a node to see details."}
|
| 145 |
+
|
| 146 |
+
graph = graph_from_dict(graph_payload)
|
| 147 |
+
node = next((candidate for candidate in graph.nodes if candidate.id == selected_node_id), None)
|
| 148 |
+
if node is None:
|
| 149 |
+
return {"message": "Selected node not found."}
|
| 150 |
+
|
| 151 |
+
node_ids = {candidate.id for candidate in graph.nodes}
|
| 152 |
+
outgoing = [
|
| 153 |
+
{
|
| 154 |
+
"predicate": edge.predicate,
|
| 155 |
+
"source": edge.source,
|
| 156 |
+
"target": edge.target,
|
| 157 |
+
}
|
| 158 |
+
for edge in graph.edges
|
| 159 |
+
if edge.source == selected_node_id and edge.target in node_ids
|
| 160 |
+
]
|
| 161 |
+
incoming = [
|
| 162 |
+
{
|
| 163 |
+
"predicate": edge.predicate,
|
| 164 |
+
"source": edge.source,
|
| 165 |
+
"target": edge.target,
|
| 166 |
+
}
|
| 167 |
+
for edge in graph.edges
|
| 168 |
+
if edge.target == selected_node_id and edge.source in node_ids
|
| 169 |
+
]
|
| 170 |
+
dangling = [
|
| 171 |
+
{
|
| 172 |
+
"predicate": edge.predicate,
|
| 173 |
+
"source": edge.source,
|
| 174 |
+
"target": edge.target,
|
| 175 |
+
}
|
| 176 |
+
for edge in graph.edges
|
| 177 |
+
if (
|
| 178 |
+
edge.source == selected_node_id
|
| 179 |
+
and edge.target not in node_ids
|
| 180 |
+
or edge.target == selected_node_id
|
| 181 |
+
and edge.source not in node_ids
|
| 182 |
+
)
|
| 183 |
+
]
|
| 184 |
+
|
| 185 |
+
return {
|
| 186 |
+
"id": node.id,
|
| 187 |
+
"label": node.label,
|
| 188 |
+
"attributes": node.attributes,
|
| 189 |
+
"outgoing_edges": outgoing,
|
| 190 |
+
"incoming_edges": incoming,
|
| 191 |
+
"dangling_edges": dangling,
|
| 192 |
+
}
|
| 193 |
+
|
| 194 |
+
|
| 195 |
+
def _render_figure(
|
| 196 |
+
graph_payload: dict[str, Any] | None,
|
| 197 |
+
image_payload: dict[str, Any] | None,
|
| 198 |
+
toggles: list[str] | None,
|
| 199 |
+
layout_mode: str | None,
|
| 200 |
+
show_image: bool,
|
| 201 |
+
background_opacity: float | None,
|
| 202 |
+
show_bboxes: bool,
|
| 203 |
+
selected_node_id: str | None,
|
| 204 |
+
):
|
| 205 |
+
if not graph_payload:
|
| 206 |
+
return empty_figure("Upload a graph JSON to begin.")
|
| 207 |
+
|
| 208 |
+
graph = graph_from_dict(graph_payload)
|
| 209 |
+
active_toggles = toggles or []
|
| 210 |
+
background = None
|
| 211 |
+
background_aspect = None
|
| 212 |
+
if show_image and image_payload:
|
| 213 |
+
background = image_payload.get("data_uri")
|
| 214 |
+
background_aspect = image_payload.get("aspect")
|
| 215 |
+
|
| 216 |
+
return build_figure(
|
| 217 |
+
graph,
|
| 218 |
+
show_nodes="nodes" in active_toggles,
|
| 219 |
+
show_edges="edges" in active_toggles,
|
| 220 |
+
show_node_labels="node_labels" in active_toggles and "nodes" in active_toggles,
|
| 221 |
+
show_edge_labels="edge_labels" in active_toggles and "edges" in active_toggles,
|
| 222 |
+
selected_node_id=selected_node_id,
|
| 223 |
+
layout_mode=layout_mode or "force",
|
| 224 |
+
background_image=background,
|
| 225 |
+
background_aspect=background_aspect,
|
| 226 |
+
background_opacity=background_opacity if background_opacity is not None else 0.35,
|
| 227 |
+
show_bboxes=show_bboxes,
|
| 228 |
+
highlight_node_id=selected_node_id,
|
| 229 |
+
)
|
| 230 |
+
|
| 231 |
+
|
| 232 |
+
def _render_visual_outputs(
|
| 233 |
+
graph_payload: dict[str, Any] | None,
|
| 234 |
+
image_payload: dict[str, Any] | None,
|
| 235 |
+
toggles: list[str] | None,
|
| 236 |
+
layout_mode: str | None,
|
| 237 |
+
show_image: bool,
|
| 238 |
+
background_opacity: float | None,
|
| 239 |
+
show_bboxes: bool,
|
| 240 |
+
selected_node_id: str | None,
|
| 241 |
+
):
|
| 242 |
+
return (
|
| 243 |
+
_render_figure(
|
| 244 |
+
graph_payload,
|
| 245 |
+
image_payload,
|
| 246 |
+
toggles,
|
| 247 |
+
layout_mode,
|
| 248 |
+
show_image,
|
| 249 |
+
background_opacity,
|
| 250 |
+
show_bboxes,
|
| 251 |
+
selected_node_id,
|
| 252 |
+
),
|
| 253 |
+
_node_details(graph_payload, selected_node_id),
|
| 254 |
+
)
|
| 255 |
+
|
| 256 |
+
|
| 257 |
+
def handle_graph_upload(
|
| 258 |
+
graph_file: Any,
|
| 259 |
+
image_payload: dict[str, Any] | None,
|
| 260 |
+
toggles: list[str] | None,
|
| 261 |
+
layout_mode: str | None,
|
| 262 |
+
show_image: bool,
|
| 263 |
+
background_opacity: float | None,
|
| 264 |
+
show_bboxes: bool,
|
| 265 |
+
):
|
| 266 |
+
if graph_file is None:
|
| 267 |
+
return (
|
| 268 |
+
None,
|
| 269 |
+
None,
|
| 270 |
+
None,
|
| 271 |
+
gr.update(choices=[], value=None),
|
| 272 |
+
"No graph loaded.",
|
| 273 |
+
"Dangling edges: 0",
|
| 274 |
+
[],
|
| 275 |
+
empty_figure("Upload a graph JSON to begin."),
|
| 276 |
+
{"message": "No graph loaded."},
|
| 277 |
+
None,
|
| 278 |
+
"Graph cleared.",
|
| 279 |
+
)
|
| 280 |
+
|
| 281 |
+
try:
|
| 282 |
+
graph_payload, raw_json, graph_name = _load_graph_upload(graph_file)
|
| 283 |
+
except Exception as exc:
|
| 284 |
+
return (
|
| 285 |
+
None,
|
| 286 |
+
None,
|
| 287 |
+
None,
|
| 288 |
+
gr.update(choices=[], value=None),
|
| 289 |
+
f"Failed to parse graph: {exc}",
|
| 290 |
+
"Dangling edges: 0",
|
| 291 |
+
[],
|
| 292 |
+
empty_figure("Failed to parse graph JSON."),
|
| 293 |
+
{"message": "No graph loaded."},
|
| 294 |
+
None,
|
| 295 |
+
f"Upload failed: {exc}",
|
| 296 |
+
)
|
| 297 |
+
|
| 298 |
+
return (
|
| 299 |
+
graph_payload,
|
| 300 |
+
raw_json,
|
| 301 |
+
graph_name,
|
| 302 |
+
gr.update(choices=_node_choices(graph_payload), value=None),
|
| 303 |
+
_summary(graph_payload, graph_name),
|
| 304 |
+
_dangling_markdown(graph_payload),
|
| 305 |
+
_edge_rows(graph_payload),
|
| 306 |
+
_render_figure(
|
| 307 |
+
graph_payload,
|
| 308 |
+
image_payload,
|
| 309 |
+
toggles,
|
| 310 |
+
layout_mode,
|
| 311 |
+
show_image,
|
| 312 |
+
background_opacity,
|
| 313 |
+
show_bboxes,
|
| 314 |
+
None,
|
| 315 |
+
),
|
| 316 |
+
_node_details(graph_payload, None),
|
| 317 |
+
raw_json,
|
| 318 |
+
f"Loaded {graph_name}.",
|
| 319 |
+
)
|
| 320 |
+
|
| 321 |
+
|
| 322 |
+
def handle_image_upload(
|
| 323 |
+
image_file: Any,
|
| 324 |
+
graph_payload: dict[str, Any] | None,
|
| 325 |
+
toggles: list[str] | None,
|
| 326 |
+
layout_mode: str | None,
|
| 327 |
+
show_image: bool,
|
| 328 |
+
background_opacity: float | None,
|
| 329 |
+
show_bboxes: bool,
|
| 330 |
+
selected_node_id: str | None,
|
| 331 |
+
):
|
| 332 |
+
if image_file is None:
|
| 333 |
+
return (
|
| 334 |
+
None,
|
| 335 |
+
_render_figure(
|
| 336 |
+
graph_payload,
|
| 337 |
+
None,
|
| 338 |
+
toggles,
|
| 339 |
+
layout_mode,
|
| 340 |
+
show_image,
|
| 341 |
+
background_opacity,
|
| 342 |
+
show_bboxes,
|
| 343 |
+
selected_node_id,
|
| 344 |
+
),
|
| 345 |
+
"Image cleared.",
|
| 346 |
+
)
|
| 347 |
+
|
| 348 |
+
try:
|
| 349 |
+
image_payload = _image_state_from_upload(image_file)
|
| 350 |
+
except Exception as exc:
|
| 351 |
+
return (
|
| 352 |
+
None,
|
| 353 |
+
_render_figure(
|
| 354 |
+
graph_payload,
|
| 355 |
+
None,
|
| 356 |
+
toggles,
|
| 357 |
+
layout_mode,
|
| 358 |
+
show_image,
|
| 359 |
+
background_opacity,
|
| 360 |
+
show_bboxes,
|
| 361 |
+
selected_node_id,
|
| 362 |
+
),
|
| 363 |
+
f"Image upload failed: {exc}",
|
| 364 |
+
)
|
| 365 |
+
|
| 366 |
+
return (
|
| 367 |
+
image_payload,
|
| 368 |
+
_render_figure(
|
| 369 |
+
graph_payload,
|
| 370 |
+
image_payload,
|
| 371 |
+
toggles,
|
| 372 |
+
layout_mode,
|
| 373 |
+
show_image,
|
| 374 |
+
background_opacity,
|
| 375 |
+
show_bboxes,
|
| 376 |
+
selected_node_id,
|
| 377 |
+
),
|
| 378 |
+
f"Loaded image {image_payload['name']}.",
|
| 379 |
+
)
|
| 380 |
+
|
| 381 |
+
|
| 382 |
+
def create_app() -> gr.Blocks:
|
| 383 |
+
with gr.Blocks(title="KGVis", fill_width=True) as app:
|
| 384 |
+
graph_state = gr.State(None)
|
| 385 |
+
raw_state = gr.State(None)
|
| 386 |
+
graph_name_state = gr.State(None)
|
| 387 |
+
image_state = gr.State(None)
|
| 388 |
+
|
| 389 |
+
with gr.Column(elem_classes=["kgvis-shell"]):
|
| 390 |
+
gr.Markdown("# KGVis")
|
| 391 |
+
|
| 392 |
+
with gr.Row():
|
| 393 |
+
with gr.Column(scale=1, min_width=300):
|
| 394 |
+
graph_file = gr.File(
|
| 395 |
+
label="Upload JSON",
|
| 396 |
+
file_count="single",
|
| 397 |
+
file_types=[".json"],
|
| 398 |
+
type="filepath",
|
| 399 |
+
)
|
| 400 |
+
image_file = gr.File(
|
| 401 |
+
label="Upload Image",
|
| 402 |
+
file_count="single",
|
| 403 |
+
file_types=[".png", ".jpg", ".jpeg"],
|
| 404 |
+
type="filepath",
|
| 405 |
+
)
|
| 406 |
+
status = gr.Textbox(
|
| 407 |
+
label="Status",
|
| 408 |
+
value="Upload a graph JSON to begin.",
|
| 409 |
+
interactive=False,
|
| 410 |
+
lines=2,
|
| 411 |
+
elem_classes=["kgvis-status"],
|
| 412 |
+
)
|
| 413 |
+
toggles = gr.CheckboxGroup(
|
| 414 |
+
label="View Options",
|
| 415 |
+
choices=[
|
| 416 |
+
("Show nodes", "nodes"),
|
| 417 |
+
("Show edges", "edges"),
|
| 418 |
+
("Show node labels", "node_labels"),
|
| 419 |
+
("Show edge labels", "edge_labels"),
|
| 420 |
+
],
|
| 421 |
+
value=DEFAULT_TOGGLES,
|
| 422 |
+
)
|
| 423 |
+
layout_mode = gr.Radio(
|
| 424 |
+
label="Layout",
|
| 425 |
+
choices=[
|
| 426 |
+
("Force layout", "force"),
|
| 427 |
+
("Image layout (bbox)", "bbox"),
|
| 428 |
+
],
|
| 429 |
+
value="force",
|
| 430 |
+
)
|
| 431 |
+
show_bboxes = gr.Checkbox(label="Show bounding boxes", value=False)
|
| 432 |
+
show_image = gr.Checkbox(label="Show image", value=True)
|
| 433 |
+
background_opacity = gr.Slider(
|
| 434 |
+
label="Background opacity",
|
| 435 |
+
minimum=0.0,
|
| 436 |
+
maximum=1.0,
|
| 437 |
+
step=0.05,
|
| 438 |
+
value=0.35,
|
| 439 |
+
)
|
| 440 |
+
selected_node = gr.Dropdown(
|
| 441 |
+
label="Selected Node",
|
| 442 |
+
choices=[],
|
| 443 |
+
value=None,
|
| 444 |
+
interactive=True,
|
| 445 |
+
)
|
| 446 |
+
|
| 447 |
+
with gr.Column(scale=3, min_width=640):
|
| 448 |
+
summary = gr.Markdown("No graph loaded.")
|
| 449 |
+
plot = gr.Plot(
|
| 450 |
+
label="Graph",
|
| 451 |
+
value=empty_figure("Upload a graph JSON to begin."),
|
| 452 |
+
elem_classes=["kgvis-plot"],
|
| 453 |
+
)
|
| 454 |
+
dangling = gr.Markdown("Dangling edges: 0")
|
| 455 |
+
|
| 456 |
+
with gr.Row():
|
| 457 |
+
with gr.Column(scale=1):
|
| 458 |
+
node_details = gr.JSON(
|
| 459 |
+
label="Node Details",
|
| 460 |
+
value={"message": "No graph loaded."},
|
| 461 |
+
)
|
| 462 |
+
with gr.Column(scale=1):
|
| 463 |
+
edge_table = gr.Dataframe(
|
| 464 |
+
label="Edges",
|
| 465 |
+
headers=["Source", "Predicate", "Target", "Dangling"],
|
| 466 |
+
datatype=["str", "str", "str", "str"],
|
| 467 |
+
interactive=False,
|
| 468 |
+
)
|
| 469 |
+
|
| 470 |
+
raw_json = gr.JSON(label="Raw JSON", value=None)
|
| 471 |
+
|
| 472 |
+
graph_file.change(
|
| 473 |
+
handle_graph_upload,
|
| 474 |
+
inputs=[
|
| 475 |
+
graph_file,
|
| 476 |
+
image_state,
|
| 477 |
+
toggles,
|
| 478 |
+
layout_mode,
|
| 479 |
+
show_image,
|
| 480 |
+
background_opacity,
|
| 481 |
+
show_bboxes,
|
| 482 |
+
],
|
| 483 |
+
outputs=[
|
| 484 |
+
graph_state,
|
| 485 |
+
raw_state,
|
| 486 |
+
graph_name_state,
|
| 487 |
+
selected_node,
|
| 488 |
+
summary,
|
| 489 |
+
dangling,
|
| 490 |
+
edge_table,
|
| 491 |
+
plot,
|
| 492 |
+
node_details,
|
| 493 |
+
raw_json,
|
| 494 |
+
status,
|
| 495 |
+
],
|
| 496 |
+
)
|
| 497 |
+
|
| 498 |
+
image_file.change(
|
| 499 |
+
handle_image_upload,
|
| 500 |
+
inputs=[
|
| 501 |
+
image_file,
|
| 502 |
+
graph_state,
|
| 503 |
+
toggles,
|
| 504 |
+
layout_mode,
|
| 505 |
+
show_image,
|
| 506 |
+
background_opacity,
|
| 507 |
+
show_bboxes,
|
| 508 |
+
selected_node,
|
| 509 |
+
],
|
| 510 |
+
outputs=[image_state, plot, status],
|
| 511 |
+
)
|
| 512 |
+
|
| 513 |
+
for control in (
|
| 514 |
+
toggles,
|
| 515 |
+
layout_mode,
|
| 516 |
+
show_image,
|
| 517 |
+
background_opacity,
|
| 518 |
+
show_bboxes,
|
| 519 |
+
selected_node,
|
| 520 |
+
):
|
| 521 |
+
control.change(
|
| 522 |
+
_render_visual_outputs,
|
| 523 |
+
inputs=[
|
| 524 |
+
graph_state,
|
| 525 |
+
image_state,
|
| 526 |
+
toggles,
|
| 527 |
+
layout_mode,
|
| 528 |
+
show_image,
|
| 529 |
+
background_opacity,
|
| 530 |
+
show_bboxes,
|
| 531 |
+
selected_node,
|
| 532 |
+
],
|
| 533 |
+
outputs=[plot, node_details],
|
| 534 |
+
)
|
| 535 |
+
|
| 536 |
+
return app
|
| 537 |
+
|
| 538 |
+
|
| 539 |
+
if __name__ == "__main__":
|
| 540 |
+
create_app().launch(css=CSS)
|
kgvis/__init__.py
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
"""KGVis package."""
|
kgvis/plot.py
ADDED
|
@@ -0,0 +1,520 @@
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
from __future__ import annotations
|
| 2 |
+
|
| 3 |
+
from typing import Iterable, Tuple
|
| 4 |
+
|
| 5 |
+
import networkx as nx
|
| 6 |
+
import plotly.graph_objects as go
|
| 7 |
+
|
| 8 |
+
from .schema import GraphData
|
| 9 |
+
|
| 10 |
+
|
| 11 |
+
def _build_layout(graph: GraphData, mode: str) -> dict[str, tuple[float, float]]:
|
| 12 |
+
if not graph.nodes:
|
| 13 |
+
return {}
|
| 14 |
+
|
| 15 |
+
graph_nx = nx.DiGraph()
|
| 16 |
+
for node in graph.nodes:
|
| 17 |
+
graph_nx.add_node(node.id)
|
| 18 |
+
for edge in graph.edges:
|
| 19 |
+
graph_nx.add_edge(edge.source, edge.target, predicate=edge.predicate)
|
| 20 |
+
|
| 21 |
+
if mode == "bbox":
|
| 22 |
+
explicit_positions: dict[str, tuple[float, float]] = {}
|
| 23 |
+
for node in graph.nodes:
|
| 24 |
+
center = _center_from_location(node.attributes)
|
| 25 |
+
if center is not None:
|
| 26 |
+
explicit_positions[node.id] = center
|
| 27 |
+
|
| 28 |
+
if explicit_positions and len(explicit_positions) == len(graph.nodes):
|
| 29 |
+
return explicit_positions
|
| 30 |
+
|
| 31 |
+
if explicit_positions:
|
| 32 |
+
return _spring_layout(graph_nx, pos=explicit_positions, fixed=explicit_positions.keys())
|
| 33 |
+
|
| 34 |
+
return _layout_force(graph_nx)
|
| 35 |
+
|
| 36 |
+
|
| 37 |
+
def _spring_layout(
|
| 38 |
+
graph_nx: nx.DiGraph,
|
| 39 |
+
pos: dict[str, tuple[float, float]] | None = None,
|
| 40 |
+
fixed: Iterable[str] | None = None,
|
| 41 |
+
) -> dict[str, tuple[float, float]]:
|
| 42 |
+
n = max(graph_nx.number_of_nodes(), 1)
|
| 43 |
+
k = 0.9 / (n**0.5)
|
| 44 |
+
return nx.spring_layout(
|
| 45 |
+
graph_nx,
|
| 46 |
+
seed=42,
|
| 47 |
+
k=k,
|
| 48 |
+
iterations=300,
|
| 49 |
+
pos=pos,
|
| 50 |
+
fixed=fixed,
|
| 51 |
+
)
|
| 52 |
+
|
| 53 |
+
|
| 54 |
+
def _center_from_location(attributes: dict) -> Tuple[float, float] | None:
|
| 55 |
+
if not isinstance(attributes, dict):
|
| 56 |
+
return None
|
| 57 |
+
|
| 58 |
+
bbox = attributes.get("bbox")
|
| 59 |
+
if isinstance(bbox, dict):
|
| 60 |
+
try:
|
| 61 |
+
x1 = float(bbox["x1"])
|
| 62 |
+
y1 = float(bbox["y1"])
|
| 63 |
+
x2 = float(bbox["x2"])
|
| 64 |
+
y2 = float(bbox["y2"])
|
| 65 |
+
return _to_plot_center(x1, y1, x2, y2)
|
| 66 |
+
except (KeyError, TypeError, ValueError):
|
| 67 |
+
pass
|
| 68 |
+
|
| 69 |
+
raw = attributes.get("location_raw") or attributes.get("location")
|
| 70 |
+
parsed = _parse_location_value(raw)
|
| 71 |
+
if parsed:
|
| 72 |
+
x1, y1, x2, y2 = parsed
|
| 73 |
+
return _to_plot_center(x1, y1, x2, y2)
|
| 74 |
+
return None
|
| 75 |
+
|
| 76 |
+
|
| 77 |
+
def _parse_location_value(value) -> Tuple[float, float, float, float] | None:
|
| 78 |
+
parts: list[float] = []
|
| 79 |
+
if isinstance(value, str):
|
| 80 |
+
try:
|
| 81 |
+
parts = [float(p.strip()) for p in value.split(",") if p.strip()]
|
| 82 |
+
except ValueError:
|
| 83 |
+
return None
|
| 84 |
+
elif isinstance(value, (list, tuple)):
|
| 85 |
+
try:
|
| 86 |
+
parts = [float(p) for p in value]
|
| 87 |
+
except (TypeError, ValueError):
|
| 88 |
+
return None
|
| 89 |
+
else:
|
| 90 |
+
return None
|
| 91 |
+
|
| 92 |
+
if len(parts) < 4:
|
| 93 |
+
return None
|
| 94 |
+
return parts[0], parts[1], parts[2], parts[3]
|
| 95 |
+
|
| 96 |
+
|
| 97 |
+
def _to_plot_center(x1: float, y1: float, x2: float, y2: float) -> Tuple[float, float]:
|
| 98 |
+
center_x = (x1 + x2) / 2
|
| 99 |
+
center_y = (y1 + y2) / 2
|
| 100 |
+
# Normalize to plot coords: y=0 at bottom. Flip so y=0 is top like images.
|
| 101 |
+
return center_x, 1 - center_y
|
| 102 |
+
|
| 103 |
+
|
| 104 |
+
def _normalize_positions(
|
| 105 |
+
pos: dict[str, tuple[float, float]],
|
| 106 |
+
padding: float = 0.05,
|
| 107 |
+
) -> dict[str, tuple[float, float]]:
|
| 108 |
+
if not pos:
|
| 109 |
+
return {}
|
| 110 |
+
xs = [p[0] for p in pos.values()]
|
| 111 |
+
ys = [p[1] for p in pos.values()]
|
| 112 |
+
min_x, max_x = min(xs), max(xs)
|
| 113 |
+
min_y, max_y = min(ys), max(ys)
|
| 114 |
+
span_x = max(max_x - min_x, 1e-6)
|
| 115 |
+
span_y = max(max_y - min_y, 1e-6)
|
| 116 |
+
scale_x = (1 - 2 * padding) / span_x
|
| 117 |
+
scale_y = (1 - 2 * padding) / span_y
|
| 118 |
+
normalized = {}
|
| 119 |
+
for node_id, (x, y) in pos.items():
|
| 120 |
+
nx = padding + (x - min_x) * scale_x
|
| 121 |
+
ny = padding + (y - min_y) * scale_y
|
| 122 |
+
normalized[node_id] = (nx, ny)
|
| 123 |
+
return normalized
|
| 124 |
+
|
| 125 |
+
|
| 126 |
+
def _layout_force(graph_nx: nx.DiGraph) -> dict[str, tuple[float, float]]:
|
| 127 |
+
if graph_nx.number_of_nodes() == 0:
|
| 128 |
+
return {}
|
| 129 |
+
|
| 130 |
+
undirected = graph_nx.to_undirected()
|
| 131 |
+
components = [list(c) for c in nx.connected_components(undirected)]
|
| 132 |
+
components.sort(key=len, reverse=True)
|
| 133 |
+
|
| 134 |
+
count = len(components)
|
| 135 |
+
cols = max(1, int((count**0.5) + 0.999))
|
| 136 |
+
rows = (count + cols - 1) // cols
|
| 137 |
+
cell_w = 1 / cols
|
| 138 |
+
cell_h = 1 / rows
|
| 139 |
+
cell_pad = 0.08
|
| 140 |
+
|
| 141 |
+
positions: dict[str, tuple[float, float]] = {}
|
| 142 |
+
for idx, nodes in enumerate(components):
|
| 143 |
+
sub = graph_nx.subgraph(nodes)
|
| 144 |
+
if len(nodes) == 1:
|
| 145 |
+
pos_comp = {nodes[0]: (0.5, 0.5)}
|
| 146 |
+
else:
|
| 147 |
+
pos_comp = _spring_layout(sub)
|
| 148 |
+
pos_comp = _normalize_positions(pos_comp, padding=0.1)
|
| 149 |
+
|
| 150 |
+
col = idx % cols
|
| 151 |
+
row = idx // cols
|
| 152 |
+
x0 = col * cell_w
|
| 153 |
+
y0 = row * cell_h
|
| 154 |
+
scale_x = cell_w * (1 - 2 * cell_pad)
|
| 155 |
+
scale_y = cell_h * (1 - 2 * cell_pad)
|
| 156 |
+
for node_id, (x, y) in pos_comp.items():
|
| 157 |
+
px = x0 + cell_pad * cell_w + x * scale_x
|
| 158 |
+
py = y0 + cell_pad * cell_h + y * scale_y
|
| 159 |
+
positions[node_id] = (px, py)
|
| 160 |
+
|
| 161 |
+
return _normalize_positions(positions, padding=0.04)
|
| 162 |
+
|
| 163 |
+
|
| 164 |
+
def build_figure(
|
| 165 |
+
graph: GraphData,
|
| 166 |
+
*,
|
| 167 |
+
show_nodes: bool,
|
| 168 |
+
show_edges: bool,
|
| 169 |
+
show_node_labels: bool,
|
| 170 |
+
show_edge_labels: bool,
|
| 171 |
+
selected_node_id: str | None,
|
| 172 |
+
layout_mode: str,
|
| 173 |
+
background_image: str | None = None,
|
| 174 |
+
background_aspect: float | None = None,
|
| 175 |
+
background_opacity: float = 0.35,
|
| 176 |
+
show_bboxes: bool = False,
|
| 177 |
+
highlight_node_id: str | None = None,
|
| 178 |
+
) -> go.Figure:
|
| 179 |
+
pos = _build_layout(graph, layout_mode)
|
| 180 |
+
image_frame = _image_frame(background_aspect) if background_aspect else None
|
| 181 |
+
image_domain = _image_domain(background_aspect) if background_aspect else None
|
| 182 |
+
if layout_mode == "bbox" and image_domain:
|
| 183 |
+
pos = _scale_positions(pos, image_domain)
|
| 184 |
+
|
| 185 |
+
edge_x: list[float] = []
|
| 186 |
+
edge_y: list[float] = []
|
| 187 |
+
edge_text_x: list[float] = []
|
| 188 |
+
edge_text_y: list[float] = []
|
| 189 |
+
edge_text: list[str] = []
|
| 190 |
+
|
| 191 |
+
if show_edges:
|
| 192 |
+
for edge in graph.edges:
|
| 193 |
+
if edge.source not in pos or edge.target not in pos:
|
| 194 |
+
continue
|
| 195 |
+
x0, y0 = pos[edge.source]
|
| 196 |
+
x1, y1 = pos[edge.target]
|
| 197 |
+
edge_x.extend([x0, x1, None])
|
| 198 |
+
edge_y.extend([y0, y1, None])
|
| 199 |
+
edge_text_x.append((x0 + x1) / 2)
|
| 200 |
+
edge_text_y.append((y0 + y1) / 2)
|
| 201 |
+
edge_text.append(edge.predicate)
|
| 202 |
+
|
| 203 |
+
edge_trace = None
|
| 204 |
+
if show_edges:
|
| 205 |
+
edge_trace = go.Scatter(
|
| 206 |
+
x=edge_x,
|
| 207 |
+
y=edge_y,
|
| 208 |
+
mode="lines",
|
| 209 |
+
line={"width": 1.2, "color": "#9aa4b2"},
|
| 210 |
+
hoverinfo="none",
|
| 211 |
+
)
|
| 212 |
+
|
| 213 |
+
node_x: list[float] = []
|
| 214 |
+
node_y: list[float] = []
|
| 215 |
+
node_text: list[str] = []
|
| 216 |
+
node_hover: list[str] = []
|
| 217 |
+
node_color: list[str] = []
|
| 218 |
+
node_ids: list[str] = []
|
| 219 |
+
|
| 220 |
+
if show_nodes:
|
| 221 |
+
for node in graph.nodes:
|
| 222 |
+
if node.id not in pos:
|
| 223 |
+
continue
|
| 224 |
+
x, y = pos[node.id]
|
| 225 |
+
node_x.append(x)
|
| 226 |
+
node_y.append(y)
|
| 227 |
+
node_ids.append(node.id)
|
| 228 |
+
node_text.append(node.label if show_node_labels else "")
|
| 229 |
+
node_hover.append(f"{node.label} ({node.id})")
|
| 230 |
+
if selected_node_id and node.id == selected_node_id:
|
| 231 |
+
node_color.append("#ff7b7b")
|
| 232 |
+
else:
|
| 233 |
+
node_color.append("#3a7bd5")
|
| 234 |
+
|
| 235 |
+
node_trace = None
|
| 236 |
+
if show_nodes:
|
| 237 |
+
node_trace = go.Scatter(
|
| 238 |
+
x=node_x,
|
| 239 |
+
y=node_y,
|
| 240 |
+
mode="markers+text" if show_node_labels else "markers",
|
| 241 |
+
text=node_text,
|
| 242 |
+
textposition="top center",
|
| 243 |
+
textfont={"size": 12, "color": "#1f2a44"},
|
| 244 |
+
hovertext=node_hover,
|
| 245 |
+
hoverinfo="text",
|
| 246 |
+
marker={
|
| 247 |
+
"size": 16,
|
| 248 |
+
"color": node_color,
|
| 249 |
+
"line": {"width": 1.2, "color": "#0f172a"},
|
| 250 |
+
},
|
| 251 |
+
customdata=node_ids,
|
| 252 |
+
)
|
| 253 |
+
|
| 254 |
+
traces: list[go.Scatter] = []
|
| 255 |
+
if edge_trace is not None:
|
| 256 |
+
traces.append(edge_trace)
|
| 257 |
+
if node_trace is not None:
|
| 258 |
+
traces.append(node_trace)
|
| 259 |
+
|
| 260 |
+
if show_edges and show_edge_labels and edge_text:
|
| 261 |
+
edge_label_trace = go.Scatter(
|
| 262 |
+
x=edge_text_x,
|
| 263 |
+
y=edge_text_y,
|
| 264 |
+
mode="text",
|
| 265 |
+
text=edge_text,
|
| 266 |
+
textfont={"size": 11, "color": "#475569"},
|
| 267 |
+
hoverinfo="none",
|
| 268 |
+
)
|
| 269 |
+
traces.append(edge_label_trace)
|
| 270 |
+
|
| 271 |
+
fig = go.Figure(data=traces)
|
| 272 |
+
layout_update = dict(
|
| 273 |
+
showlegend=False,
|
| 274 |
+
hovermode="closest",
|
| 275 |
+
margin={"l": 10, "r": 10, "t": 10, "b": 10},
|
| 276 |
+
xaxis={"visible": False, "range": [0, 1]},
|
| 277 |
+
yaxis={"visible": False, "range": [0, 1]},
|
| 278 |
+
plot_bgcolor="#ffffff",
|
| 279 |
+
annotations=_edge_annotations(graph, pos) if show_edges else [],
|
| 280 |
+
dragmode="pan",
|
| 281 |
+
)
|
| 282 |
+
if layout_mode == "bbox" and image_domain:
|
| 283 |
+
width, height = image_domain
|
| 284 |
+
layout_update["xaxis"] = {
|
| 285 |
+
"visible": False,
|
| 286 |
+
"range": [0, width],
|
| 287 |
+
"constrain": "domain",
|
| 288 |
+
}
|
| 289 |
+
layout_update["yaxis"] = {
|
| 290 |
+
"visible": False,
|
| 291 |
+
"range": [0, height],
|
| 292 |
+
"scaleanchor": "x",
|
| 293 |
+
"scaleratio": 1,
|
| 294 |
+
"constrain": "domain",
|
| 295 |
+
}
|
| 296 |
+
fig.update_layout(**layout_update)
|
| 297 |
+
|
| 298 |
+
if show_bboxes:
|
| 299 |
+
shapes = _bbox_shapes(
|
| 300 |
+
graph,
|
| 301 |
+
image_domain=image_domain if layout_mode == "bbox" else None,
|
| 302 |
+
frame=image_frame if layout_mode != "bbox" else None,
|
| 303 |
+
highlight_node_id=highlight_node_id,
|
| 304 |
+
)
|
| 305 |
+
if shapes:
|
| 306 |
+
fig.update_layout(shapes=shapes)
|
| 307 |
+
|
| 308 |
+
if background_image:
|
| 309 |
+
if layout_mode == "bbox" and image_domain:
|
| 310 |
+
x0, y0, width, height = 0, 0, image_domain[0], image_domain[1]
|
| 311 |
+
elif image_frame:
|
| 312 |
+
x0, y0, width, height = image_frame
|
| 313 |
+
else:
|
| 314 |
+
x0, y0, width, height = 0, 0, 1, 1
|
| 315 |
+
fig.update_layout(
|
| 316 |
+
images=[
|
| 317 |
+
dict(
|
| 318 |
+
source=background_image,
|
| 319 |
+
xref="x",
|
| 320 |
+
yref="y",
|
| 321 |
+
x=x0,
|
| 322 |
+
y=y0 + height,
|
| 323 |
+
sizex=width,
|
| 324 |
+
sizey=height,
|
| 325 |
+
sizing="stretch",
|
| 326 |
+
xanchor="left",
|
| 327 |
+
yanchor="top",
|
| 328 |
+
opacity=max(0.0, min(background_opacity, 1.0)),
|
| 329 |
+
layer="below",
|
| 330 |
+
)
|
| 331 |
+
]
|
| 332 |
+
)
|
| 333 |
+
return fig
|
| 334 |
+
|
| 335 |
+
|
| 336 |
+
def _image_frame(aspect: float) -> tuple[float, float, float, float]:
|
| 337 |
+
if aspect <= 0:
|
| 338 |
+
return 0, 0, 1, 1
|
| 339 |
+
if aspect >= 1:
|
| 340 |
+
width = 1.0
|
| 341 |
+
height = 1.0 / aspect
|
| 342 |
+
pad_x = 0.0
|
| 343 |
+
pad_y = (1.0 - height) / 2
|
| 344 |
+
else:
|
| 345 |
+
width = aspect
|
| 346 |
+
height = 1.0
|
| 347 |
+
pad_x = (1.0 - width) / 2
|
| 348 |
+
pad_y = 0.0
|
| 349 |
+
return pad_x, pad_y, width, height
|
| 350 |
+
|
| 351 |
+
|
| 352 |
+
def _image_domain(aspect: float) -> tuple[float, float]:
|
| 353 |
+
if aspect <= 0:
|
| 354 |
+
return 1.0, 1.0
|
| 355 |
+
if aspect >= 1:
|
| 356 |
+
return aspect, 1.0
|
| 357 |
+
return 1.0, 1.0 / aspect
|
| 358 |
+
|
| 359 |
+
|
| 360 |
+
def _apply_image_frame(
|
| 361 |
+
pos: dict[str, tuple[float, float]],
|
| 362 |
+
frame: tuple[float, float, float, float],
|
| 363 |
+
) -> dict[str, tuple[float, float]]:
|
| 364 |
+
if not pos:
|
| 365 |
+
return {}
|
| 366 |
+
x0, y0, width, height = frame
|
| 367 |
+
adjusted = {}
|
| 368 |
+
for node_id, (x, y) in pos.items():
|
| 369 |
+
adjusted[node_id] = (x0 + x * width, y0 + y * height)
|
| 370 |
+
return adjusted
|
| 371 |
+
|
| 372 |
+
|
| 373 |
+
def _scale_positions(
|
| 374 |
+
pos: dict[str, tuple[float, float]],
|
| 375 |
+
domain: tuple[float, float],
|
| 376 |
+
) -> dict[str, tuple[float, float]]:
|
| 377 |
+
if not pos:
|
| 378 |
+
return {}
|
| 379 |
+
width, height = domain
|
| 380 |
+
scaled = {}
|
| 381 |
+
for node_id, (x, y) in pos.items():
|
| 382 |
+
scaled[node_id] = (x * width, y * height)
|
| 383 |
+
return scaled
|
| 384 |
+
|
| 385 |
+
|
| 386 |
+
def _bbox_from_attrs(attributes: dict) -> tuple[float, float, float, float] | None:
|
| 387 |
+
if not isinstance(attributes, dict):
|
| 388 |
+
return None
|
| 389 |
+
bbox = attributes.get("bbox")
|
| 390 |
+
if isinstance(bbox, dict):
|
| 391 |
+
try:
|
| 392 |
+
x1 = float(bbox["x1"])
|
| 393 |
+
y1 = float(bbox["y1"])
|
| 394 |
+
x2 = float(bbox["x2"])
|
| 395 |
+
y2 = float(bbox["y2"])
|
| 396 |
+
return x1, y1, x2, y2
|
| 397 |
+
except (KeyError, TypeError, ValueError):
|
| 398 |
+
pass
|
| 399 |
+
|
| 400 |
+
raw = attributes.get("location_raw") or attributes.get("location")
|
| 401 |
+
parsed = _parse_location_value(raw)
|
| 402 |
+
if parsed:
|
| 403 |
+
return parsed
|
| 404 |
+
return None
|
| 405 |
+
|
| 406 |
+
|
| 407 |
+
def _bbox_shapes(
|
| 408 |
+
graph: GraphData,
|
| 409 |
+
image_domain: tuple[float, float] | None,
|
| 410 |
+
frame: tuple[float, float, float, float] | None,
|
| 411 |
+
highlight_node_id: str | None,
|
| 412 |
+
) -> list[dict]:
|
| 413 |
+
shapes: list[dict] = []
|
| 414 |
+
for node in graph.nodes:
|
| 415 |
+
bbox = _bbox_from_attrs(node.attributes)
|
| 416 |
+
if not bbox:
|
| 417 |
+
continue
|
| 418 |
+
x1, y1, x2, y2 = bbox
|
| 419 |
+
# Convert from image coords (origin top-left) to plot coords (origin bottom-left).
|
| 420 |
+
px1, px2 = x1, x2
|
| 421 |
+
py1, py2 = 1 - y2, 1 - y1
|
| 422 |
+
|
| 423 |
+
if image_domain:
|
| 424 |
+
width, height = image_domain
|
| 425 |
+
px1 *= width
|
| 426 |
+
px2 *= width
|
| 427 |
+
py1 *= height
|
| 428 |
+
py2 *= height
|
| 429 |
+
elif frame:
|
| 430 |
+
fx, fy, fw, fh = frame
|
| 431 |
+
px1 = fx + px1 * fw
|
| 432 |
+
px2 = fx + px2 * fw
|
| 433 |
+
py1 = fy + py1 * fh
|
| 434 |
+
py2 = fy + py2 * fh
|
| 435 |
+
|
| 436 |
+
is_highlight = highlight_node_id and node.id == highlight_node_id
|
| 437 |
+
line_color = "#ef4444" if is_highlight else "rgba(242,95,76,0.55)"
|
| 438 |
+
fill_color = "rgba(239,68,68,0.18)" if is_highlight else "rgba(242,95,76,0.08)"
|
| 439 |
+
line_width = 2.4 if is_highlight else 1.2
|
| 440 |
+
|
| 441 |
+
shapes.append(
|
| 442 |
+
dict(
|
| 443 |
+
type="rect",
|
| 444 |
+
xref="x",
|
| 445 |
+
yref="y",
|
| 446 |
+
x0=min(px1, px2),
|
| 447 |
+
x1=max(px1, px2),
|
| 448 |
+
y0=min(py1, py2),
|
| 449 |
+
y1=max(py1, py2),
|
| 450 |
+
line={"color": line_color, "width": line_width},
|
| 451 |
+
fillcolor=fill_color,
|
| 452 |
+
layer="below",
|
| 453 |
+
)
|
| 454 |
+
)
|
| 455 |
+
return shapes
|
| 456 |
+
|
| 457 |
+
|
| 458 |
+
def empty_figure(message: str) -> go.Figure:
|
| 459 |
+
fig = go.Figure()
|
| 460 |
+
fig.add_annotation(
|
| 461 |
+
text=message,
|
| 462 |
+
x=0.5,
|
| 463 |
+
y=0.5,
|
| 464 |
+
xref="paper",
|
| 465 |
+
yref="paper",
|
| 466 |
+
xanchor="center",
|
| 467 |
+
yanchor="middle",
|
| 468 |
+
showarrow=False,
|
| 469 |
+
font={"size": 16, "color": "#64748b"},
|
| 470 |
+
)
|
| 471 |
+
fig.update_layout(
|
| 472 |
+
xaxis={"visible": False},
|
| 473 |
+
yaxis={"visible": False},
|
| 474 |
+
plot_bgcolor="#ffffff",
|
| 475 |
+
margin={"l": 20, "r": 20, "t": 20, "b": 20},
|
| 476 |
+
)
|
| 477 |
+
return fig
|
| 478 |
+
|
| 479 |
+
|
| 480 |
+
def _edge_annotations(graph: GraphData, pos: dict[str, tuple[float, float]]):
|
| 481 |
+
annotations = []
|
| 482 |
+
for edge in graph.edges:
|
| 483 |
+
if edge.source not in pos or edge.target not in pos:
|
| 484 |
+
continue
|
| 485 |
+
x0, y0 = pos[edge.source]
|
| 486 |
+
x1, y1 = pos[edge.target]
|
| 487 |
+
dx = x1 - x0
|
| 488 |
+
dy = y1 - y0
|
| 489 |
+
length = (dx**2 + dy**2) ** 0.5
|
| 490 |
+
if length == 0:
|
| 491 |
+
continue
|
| 492 |
+
|
| 493 |
+
# Shorten the arrow so it doesn't overlap the node markers.
|
| 494 |
+
shrink = min(0.05, length * 0.25)
|
| 495 |
+
ux = dx / length
|
| 496 |
+
uy = dy / length
|
| 497 |
+
tail_x = x0 + ux * shrink
|
| 498 |
+
tail_y = y0 + uy * shrink
|
| 499 |
+
head_x = x1 - ux * shrink
|
| 500 |
+
head_y = y1 - uy * shrink
|
| 501 |
+
|
| 502 |
+
annotations.append(
|
| 503 |
+
dict(
|
| 504 |
+
x=head_x,
|
| 505 |
+
y=head_y,
|
| 506 |
+
ax=tail_x,
|
| 507 |
+
ay=tail_y,
|
| 508 |
+
xref="x",
|
| 509 |
+
yref="y",
|
| 510 |
+
axref="x",
|
| 511 |
+
ayref="y",
|
| 512 |
+
showarrow=True,
|
| 513 |
+
arrowhead=3,
|
| 514 |
+
arrowsize=1.15,
|
| 515 |
+
arrowwidth=1.2,
|
| 516 |
+
arrowcolor="#94a3b8",
|
| 517 |
+
opacity=0.9,
|
| 518 |
+
)
|
| 519 |
+
)
|
| 520 |
+
return annotations
|
kgvis/schema/__init__.py
ADDED
|
@@ -0,0 +1,28 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
from __future__ import annotations
|
| 2 |
+
|
| 3 |
+
from typing import Any, Dict, Iterable
|
| 4 |
+
|
| 5 |
+
from .base import Edge, GraphData, Node, SchemaAdapter, graph_from_dict, graph_to_dict
|
| 6 |
+
from .v1 import V1Adapter
|
| 7 |
+
|
| 8 |
+
DEFAULT_ADAPTERS: list[SchemaAdapter] = [V1Adapter()]
|
| 9 |
+
|
| 10 |
+
|
| 11 |
+
def parse_graph(data: Dict[str, Any], adapters: Iterable[SchemaAdapter] | None = None) -> GraphData:
|
| 12 |
+
candidates = list(adapters or DEFAULT_ADAPTERS)
|
| 13 |
+
for adapter in candidates:
|
| 14 |
+
if adapter.can_parse(data):
|
| 15 |
+
return adapter.parse(data)
|
| 16 |
+
raise ValueError("No schema adapter matched the provided graph data.")
|
| 17 |
+
|
| 18 |
+
|
| 19 |
+
__all__ = [
|
| 20 |
+
"Edge",
|
| 21 |
+
"GraphData",
|
| 22 |
+
"Node",
|
| 23 |
+
"SchemaAdapter",
|
| 24 |
+
"DEFAULT_ADAPTERS",
|
| 25 |
+
"parse_graph",
|
| 26 |
+
"graph_from_dict",
|
| 27 |
+
"graph_to_dict",
|
| 28 |
+
]
|
kgvis/schema/base.py
ADDED
|
@@ -0,0 +1,73 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
from __future__ import annotations
|
| 2 |
+
|
| 3 |
+
from dataclasses import dataclass, field
|
| 4 |
+
from typing import Any, Dict, Protocol
|
| 5 |
+
|
| 6 |
+
|
| 7 |
+
@dataclass(frozen=True)
|
| 8 |
+
class Node:
|
| 9 |
+
id: str
|
| 10 |
+
label: str
|
| 11 |
+
attributes: Dict[str, Any] = field(default_factory=dict)
|
| 12 |
+
|
| 13 |
+
|
| 14 |
+
@dataclass(frozen=True)
|
| 15 |
+
class Edge:
|
| 16 |
+
source: str
|
| 17 |
+
target: str
|
| 18 |
+
predicate: str
|
| 19 |
+
attributes: Dict[str, Any] = field(default_factory=dict)
|
| 20 |
+
|
| 21 |
+
|
| 22 |
+
@dataclass(frozen=True)
|
| 23 |
+
class GraphData:
|
| 24 |
+
nodes: list[Node]
|
| 25 |
+
edges: list[Edge]
|
| 26 |
+
meta: Dict[str, Any] = field(default_factory=dict)
|
| 27 |
+
|
| 28 |
+
|
| 29 |
+
class SchemaAdapter(Protocol):
|
| 30 |
+
name: str
|
| 31 |
+
|
| 32 |
+
def can_parse(self, data: Dict[str, Any]) -> bool: ...
|
| 33 |
+
def parse(self, data: Dict[str, Any]) -> GraphData: ...
|
| 34 |
+
|
| 35 |
+
|
| 36 |
+
def graph_to_dict(graph: GraphData) -> Dict[str, Any]:
|
| 37 |
+
return {
|
| 38 |
+
"nodes": [
|
| 39 |
+
{"id": n.id, "label": n.label, "attributes": n.attributes} for n in graph.nodes
|
| 40 |
+
],
|
| 41 |
+
"edges": [
|
| 42 |
+
{
|
| 43 |
+
"source": e.source,
|
| 44 |
+
"target": e.target,
|
| 45 |
+
"predicate": e.predicate,
|
| 46 |
+
"attributes": e.attributes,
|
| 47 |
+
}
|
| 48 |
+
for e in graph.edges
|
| 49 |
+
],
|
| 50 |
+
"meta": dict(graph.meta),
|
| 51 |
+
}
|
| 52 |
+
|
| 53 |
+
|
| 54 |
+
def graph_from_dict(payload: Dict[str, Any]) -> GraphData:
|
| 55 |
+
nodes = [
|
| 56 |
+
Node(
|
| 57 |
+
id=n.get("id", ""),
|
| 58 |
+
label=n.get("label", ""),
|
| 59 |
+
attributes=dict(n.get("attributes", {})),
|
| 60 |
+
)
|
| 61 |
+
for n in payload.get("nodes", [])
|
| 62 |
+
]
|
| 63 |
+
edges = [
|
| 64 |
+
Edge(
|
| 65 |
+
source=e.get("source", ""),
|
| 66 |
+
target=e.get("target", ""),
|
| 67 |
+
predicate=e.get("predicate", ""),
|
| 68 |
+
attributes=dict(e.get("attributes", {})),
|
| 69 |
+
)
|
| 70 |
+
for e in payload.get("edges", [])
|
| 71 |
+
]
|
| 72 |
+
meta = dict(payload.get("meta", {}))
|
| 73 |
+
return GraphData(nodes=nodes, edges=edges, meta=meta)
|
kgvis/schema/v1.py
ADDED
|
@@ -0,0 +1,87 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
from __future__ import annotations
|
| 2 |
+
|
| 3 |
+
from typing import Any, Dict, Tuple
|
| 4 |
+
|
| 5 |
+
from .base import Edge, GraphData, Node
|
| 6 |
+
|
| 7 |
+
|
| 8 |
+
class V1Adapter:
|
| 9 |
+
name = "frame2kg_v1"
|
| 10 |
+
|
| 11 |
+
def can_parse(self, data: Dict[str, Any]) -> bool:
|
| 12 |
+
if not isinstance(data, dict):
|
| 13 |
+
return False
|
| 14 |
+
payload = data.get("graph") if isinstance(data.get("graph"), dict) else data
|
| 15 |
+
nodes = payload.get("nodes")
|
| 16 |
+
edges = payload.get("edges")
|
| 17 |
+
if not isinstance(nodes, list) or not isinstance(edges, list):
|
| 18 |
+
return False
|
| 19 |
+
if nodes and not isinstance(nodes[0], dict):
|
| 20 |
+
return False
|
| 21 |
+
if edges and not isinstance(edges[0], dict):
|
| 22 |
+
return False
|
| 23 |
+
return True
|
| 24 |
+
|
| 25 |
+
def parse(self, data: Dict[str, Any]) -> GraphData:
|
| 26 |
+
payload = data.get("graph") if isinstance(data.get("graph"), dict) else data
|
| 27 |
+
nodes = []
|
| 28 |
+
for raw in payload.get("nodes", []):
|
| 29 |
+
known_keys = {"id", "label", "attributes", "location"}
|
| 30 |
+
extra = {k: v for k, v in raw.items() if k not in known_keys}
|
| 31 |
+
attributes = {**dict(raw.get("attributes", {})), **extra}
|
| 32 |
+
location = raw.get("location")
|
| 33 |
+
if location is not None:
|
| 34 |
+
parsed = _parse_location(location)
|
| 35 |
+
if parsed:
|
| 36 |
+
bbox, confidence = parsed
|
| 37 |
+
attributes.setdefault("bbox", bbox)
|
| 38 |
+
if confidence is not None:
|
| 39 |
+
attributes.setdefault("confidence", confidence)
|
| 40 |
+
attributes.setdefault("location_raw", location)
|
| 41 |
+
nodes.append(
|
| 42 |
+
Node(
|
| 43 |
+
id=str(raw.get("id", "")),
|
| 44 |
+
label=str(raw.get("label", "")),
|
| 45 |
+
attributes=attributes,
|
| 46 |
+
)
|
| 47 |
+
)
|
| 48 |
+
|
| 49 |
+
edges = []
|
| 50 |
+
for raw in payload.get("edges", []):
|
| 51 |
+
known_keys = {"source", "target", "predicate", "attributes"}
|
| 52 |
+
extra = {k: v for k, v in raw.items() if k not in known_keys}
|
| 53 |
+
attributes = {**dict(raw.get("attributes", {})), **extra}
|
| 54 |
+
edges.append(
|
| 55 |
+
Edge(
|
| 56 |
+
source=str(raw.get("source", "")),
|
| 57 |
+
target=str(raw.get("target", "")),
|
| 58 |
+
predicate=str(raw.get("predicate", "")),
|
| 59 |
+
attributes=attributes,
|
| 60 |
+
)
|
| 61 |
+
)
|
| 62 |
+
|
| 63 |
+
meta = {"schema": self.name}
|
| 64 |
+
return GraphData(nodes=nodes, edges=edges, meta=meta)
|
| 65 |
+
|
| 66 |
+
|
| 67 |
+
def _parse_location(value: Any) -> Tuple[dict[str, float], float | None] | None:
|
| 68 |
+
parts: list[float] = []
|
| 69 |
+
if isinstance(value, str):
|
| 70 |
+
try:
|
| 71 |
+
parts = [float(p.strip()) for p in value.split(",") if p.strip()]
|
| 72 |
+
except ValueError:
|
| 73 |
+
return None
|
| 74 |
+
elif isinstance(value, (list, tuple)):
|
| 75 |
+
try:
|
| 76 |
+
parts = [float(p) for p in value]
|
| 77 |
+
except (TypeError, ValueError):
|
| 78 |
+
return None
|
| 79 |
+
else:
|
| 80 |
+
return None
|
| 81 |
+
|
| 82 |
+
if len(parts) < 4:
|
| 83 |
+
return None
|
| 84 |
+
x1, y1, x2, y2 = parts[:4]
|
| 85 |
+
confidence = parts[4] if len(parts) >= 5 else None
|
| 86 |
+
bbox = {"x1": x1, "y1": y1, "x2": x2, "y2": y2}
|
| 87 |
+
return bbox, confidence
|
requirements.txt
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
gradio>=6,<7
|
| 2 |
+
networkx>=3.3
|
| 3 |
+
pillow>=10.0.0
|
| 4 |
+
plotly>=5.22.0
|