Spaces:
Runtime error
Runtime error
Commit
Β·
32c6187
1
Parent(s):
5112501
basic version
Browse files- app.py +174 -0
- requirements.in +4 -0
- requirements.txt +184 -0
app.py
ADDED
|
@@ -0,0 +1,174 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import gradio as gr
|
| 2 |
+
from gradio_client import Client
|
| 3 |
+
import json
|
| 4 |
+
from cachetools import cached, TTLCache
|
| 5 |
+
from typing import Optional, Any, List, Union, Dict
|
| 6 |
+
import httpx
|
| 7 |
+
import requests
|
| 8 |
+
from typing import Dict, Any
|
| 9 |
+
from toolz import groupby
|
| 10 |
+
|
| 11 |
+
CACHE_TIME = 60 * 60 * 1 # 1 hour
|
| 12 |
+
|
| 13 |
+
client = Client("https://librarian-bots-collection-papers-extractor.hf.space/")
|
| 14 |
+
|
| 15 |
+
|
| 16 |
+
@cached(cache=TTLCache(maxsize=500, ttl=10))
|
| 17 |
+
def get_arxiv_ids_from_slug(
|
| 18 |
+
slug: str,
|
| 19 |
+
) -> Dict[str, Union[None, Dict[str, Dict[str, Union[List[str], List[str]]]]]]:
|
| 20 |
+
result = client.predict(slug, api_name="/predict")
|
| 21 |
+
with open(result) as f:
|
| 22 |
+
data = json.load(f)
|
| 23 |
+
return data
|
| 24 |
+
|
| 25 |
+
|
| 26 |
+
def format_arxiv_id_for_semantic_scholar(arxiv_id: str) -> str:
|
| 27 |
+
return f"ArXiv:{arxiv_id}"
|
| 28 |
+
|
| 29 |
+
|
| 30 |
+
def format_ids(data, exclude_keys: Optional[list[str]] = None) -> list[str]:
|
| 31 |
+
arxiv_ids = []
|
| 32 |
+
if exclude_keys is not None:
|
| 33 |
+
data = {k: v for k, v in data.items() if k not in exclude_keys}
|
| 34 |
+
# check if dict now empty
|
| 35 |
+
if not data:
|
| 36 |
+
return []
|
| 37 |
+
for repo in data.values():
|
| 38 |
+
if repo is None:
|
| 39 |
+
continue
|
| 40 |
+
for item in repo.values():
|
| 41 |
+
arxiv_ids.extend(item["arxiv_ids"])
|
| 42 |
+
# format for semantic scholar
|
| 43 |
+
return [format_arxiv_id_for_semantic_scholar(id) for id in arxiv_ids]
|
| 44 |
+
|
| 45 |
+
|
| 46 |
+
@cached(cache=TTLCache(maxsize=500, ttl=CACHE_TIME))
|
| 47 |
+
def get_recommendations_from_semantic_scholar(paper_ids: tuple[str]):
|
| 48 |
+
paper_ids = list(paper_ids)
|
| 49 |
+
print(paper_ids)
|
| 50 |
+
r = httpx.post(
|
| 51 |
+
"https://api.semanticscholar.org/recommendations/v1/papers/",
|
| 52 |
+
json={
|
| 53 |
+
"positivePaperIds": paper_ids,
|
| 54 |
+
},
|
| 55 |
+
params={"fields": "externalIds,title,year", "limit": 10},
|
| 56 |
+
timeout=30,
|
| 57 |
+
)
|
| 58 |
+
print(r.text)
|
| 59 |
+
return r.json()
|
| 60 |
+
|
| 61 |
+
|
| 62 |
+
def is_arxiv_paper(recommendation: Dict[str, Any]) -> bool:
|
| 63 |
+
return recommendation["externalIds"].get("ArXiv", None) is not None
|
| 64 |
+
|
| 65 |
+
|
| 66 |
+
def group_by_is_arxiv_paper(
|
| 67 |
+
recommendations: List[Dict[str, Any]]
|
| 68 |
+
) -> Dict[bool, List[Dict[str, Any]]]:
|
| 69 |
+
return groupby(is_arxiv_paper, recommendations)
|
| 70 |
+
|
| 71 |
+
|
| 72 |
+
def format_recommendation_into_markdown(
|
| 73 |
+
grouped_recommendations: Dict[bool, List[Dict[str, Any]]]
|
| 74 |
+
):
|
| 75 |
+
comment = "The following papers were recommended by the Semantic Scholar API \n\n"
|
| 76 |
+
arxiv_papers = grouped_recommendations.get(True)
|
| 77 |
+
if arxiv_papers:
|
| 78 |
+
comment += "## Papers available on Hugging Face Papers:\n\n"
|
| 79 |
+
for r in arxiv_papers:
|
| 80 |
+
hub_paper_url = f"https://huggingface.co/papers/{r['externalIds']['ArXiv']}"
|
| 81 |
+
comment += f"* [{r['title']}]({hub_paper_url}) ({r['year']})\n"
|
| 82 |
+
other_papers = grouped_recommendations.get(False)
|
| 83 |
+
if other_papers:
|
| 84 |
+
comment += "\n\n## Other papers:\n\n"
|
| 85 |
+
for r in other_papers:
|
| 86 |
+
comment += f"* {r['title']} ({r['year']})\n"
|
| 87 |
+
return comment
|
| 88 |
+
|
| 89 |
+
|
| 90 |
+
def map_repo_name_to_api_key(repo_name: str) -> str:
|
| 91 |
+
return {
|
| 92 |
+
"datasets": "dataset papers",
|
| 93 |
+
"models": "model papers",
|
| 94 |
+
"papers": "papers",
|
| 95 |
+
}[repo_name]
|
| 96 |
+
|
| 97 |
+
|
| 98 |
+
def get_recommendations_from_slug(
|
| 99 |
+
slug: str, excluded_repo_types: Optional[list[str]] = None
|
| 100 |
+
):
|
| 101 |
+
excluded_repo_types = tuple(excluded_repo_types)
|
| 102 |
+
return _get_recommendations_from_slug(slug, excluded_repo_types=excluded_repo_types)
|
| 103 |
+
|
| 104 |
+
|
| 105 |
+
@cached(cache=TTLCache(maxsize=500, ttl=60))
|
| 106 |
+
def _get_recommendations_from_slug(
|
| 107 |
+
slug: str, excluded_repo_types: Optional[tuple[str]] = None
|
| 108 |
+
):
|
| 109 |
+
data = get_arxiv_ids_from_slug(slug)
|
| 110 |
+
if excluded_repo_types:
|
| 111 |
+
excluded_repo_types = list(excluded_repo_types)
|
| 112 |
+
excluded_repo_types = [map_repo_name_to_api_key(k) for k in excluded_repo_types]
|
| 113 |
+
print(f"excluded_repo_types_remapped={excluded_repo_types}")
|
| 114 |
+
ids = format_ids(data, exclude_keys=excluded_repo_types)
|
| 115 |
+
if not ids:
|
| 116 |
+
return (
|
| 117 |
+
"Based on your collection and exclusions"
|
| 118 |
+
f" ({','.join(excluded_repo_types)}), there are no papers to recommend. Try removing some excluded repo types or adding more items to your collection."
|
| 119 |
+
)
|
| 120 |
+
ids = tuple(ids)
|
| 121 |
+
recommendations = get_recommendations_from_semantic_scholar(ids)
|
| 122 |
+
recommendations = recommendations.get("recommendedPapers")
|
| 123 |
+
if recommendations is None:
|
| 124 |
+
raise gr.Error("Something went wrong with the Semantic Scholar API")
|
| 125 |
+
grouped = group_by_is_arxiv_paper(recommendations)
|
| 126 |
+
return format_recommendation_into_markdown(grouped)
|
| 127 |
+
|
| 128 |
+
|
| 129 |
+
title = """π Collections Reading List Generator π"""
|
| 130 |
+
description = """<img src="https://huggingface.co/datasets/librarian-bots/images/raw/main/Mascot%20Bookie.svg"
|
| 131 |
+
alt="Mascot Bookie" width="200" style="float:left; margin-right:20px; margin-bottom:20px;">
|
| 132 |
+
|
| 133 |
+
\n\n
|
| 134 |
+
Hugging Face Collections allow you to curate models, datasets, spaces,
|
| 135 |
+
and papers from the Hugging Face Hub.
|
| 136 |
+
This Space will generate a reading list based on the items in your collection.
|
| 137 |
+
This can be a great way to find related papers to the models and datasets in your collection and dive more deeply into a topic!
|
| 138 |
+
|
| 139 |
+
The Space works by:
|
| 140 |
+
|
| 141 |
+
- finding any papers in your collection
|
| 142 |
+
- finding papers related to the models and datasets in your collection
|
| 143 |
+
- requesting recommendations from the [Semantic Scholar API](https://api.semanticscholar.org/api-docs/recommendations#tag/Paper-Recommendations/operation/post_papers) for these papers.
|
| 144 |
+
|
| 145 |
+
You can optionally exclude certain repo types fromm consideration when generating the reading list.
|
| 146 |
+
"""
|
| 147 |
+
|
| 148 |
+
slug_input = gr.Textbox(
|
| 149 |
+
lines=1,
|
| 150 |
+
label="Collection Slug",
|
| 151 |
+
placeholder="merve/video-classification-models-6509edd0a6f657faa425e8c3",
|
| 152 |
+
)
|
| 153 |
+
example_slugs = [
|
| 154 |
+
["merve/video-classification-models-6509edd0a6f657faa425e8c3", []],
|
| 155 |
+
["osanseviero/model-merging-65097893623330a3a51ead66", []],
|
| 156 |
+
["hf4h/clinical-language-models-64f9c1cd0cedc04f3caca264",[]]
|
| 157 |
+
]
|
| 158 |
+
|
| 159 |
+
gr.Interface(
|
| 160 |
+
get_recommendations_from_slug,
|
| 161 |
+
inputs=[
|
| 162 |
+
slug_input,
|
| 163 |
+
gr.Dropdown(
|
| 164 |
+
label="Repos to exclude from contributing to recommendations",
|
| 165 |
+
choices=["datasets", "models", "papers"],
|
| 166 |
+
multiselect=True,
|
| 167 |
+
),
|
| 168 |
+
],
|
| 169 |
+
outputs="markdown",
|
| 170 |
+
description=description,
|
| 171 |
+
title=title,
|
| 172 |
+
allow_flagging="never",
|
| 173 |
+
examples=example_slugs,
|
| 174 |
+
).launch(debug=True)
|
requirements.in
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
cachetools
|
| 2 |
+
gradio
|
| 3 |
+
gradio_client
|
| 4 |
+
httpx
|
requirements.txt
ADDED
|
@@ -0,0 +1,184 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#
|
| 2 |
+
# This file is autogenerated by pip-compile with Python 3.11
|
| 3 |
+
# by the following command:
|
| 4 |
+
#
|
| 5 |
+
# pip-compile
|
| 6 |
+
#
|
| 7 |
+
aiofiles==23.2.1
|
| 8 |
+
# via gradio
|
| 9 |
+
altair==5.1.1
|
| 10 |
+
# via gradio
|
| 11 |
+
annotated-types==0.5.0
|
| 12 |
+
# via pydantic
|
| 13 |
+
anyio==3.7.1
|
| 14 |
+
# via
|
| 15 |
+
# fastapi
|
| 16 |
+
# httpcore
|
| 17 |
+
# starlette
|
| 18 |
+
attrs==23.1.0
|
| 19 |
+
# via
|
| 20 |
+
# jsonschema
|
| 21 |
+
# referencing
|
| 22 |
+
cachetools==5.3.1
|
| 23 |
+
# via -r requirements.in
|
| 24 |
+
certifi==2023.7.22
|
| 25 |
+
# via
|
| 26 |
+
# httpcore
|
| 27 |
+
# httpx
|
| 28 |
+
# requests
|
| 29 |
+
charset-normalizer==3.2.0
|
| 30 |
+
# via requests
|
| 31 |
+
click==8.1.7
|
| 32 |
+
# via uvicorn
|
| 33 |
+
contourpy==1.1.1
|
| 34 |
+
# via matplotlib
|
| 35 |
+
cycler==0.11.0
|
| 36 |
+
# via matplotlib
|
| 37 |
+
fastapi==0.103.1
|
| 38 |
+
# via gradio
|
| 39 |
+
ffmpy==0.3.1
|
| 40 |
+
# via gradio
|
| 41 |
+
filelock==3.12.4
|
| 42 |
+
# via huggingface-hub
|
| 43 |
+
fonttools==4.42.1
|
| 44 |
+
# via matplotlib
|
| 45 |
+
fsspec==2023.9.2
|
| 46 |
+
# via
|
| 47 |
+
# gradio-client
|
| 48 |
+
# huggingface-hub
|
| 49 |
+
gradio==3.45.1
|
| 50 |
+
# via -r requirements.in
|
| 51 |
+
gradio-client==0.5.2
|
| 52 |
+
# via
|
| 53 |
+
# -r requirements.in
|
| 54 |
+
# gradio
|
| 55 |
+
h11==0.14.0
|
| 56 |
+
# via
|
| 57 |
+
# httpcore
|
| 58 |
+
# uvicorn
|
| 59 |
+
httpcore==0.18.0
|
| 60 |
+
# via httpx
|
| 61 |
+
httpx==0.25.0
|
| 62 |
+
# via
|
| 63 |
+
# -r requirements.in
|
| 64 |
+
# gradio
|
| 65 |
+
# gradio-client
|
| 66 |
+
huggingface-hub==0.17.3
|
| 67 |
+
# via
|
| 68 |
+
# gradio
|
| 69 |
+
# gradio-client
|
| 70 |
+
idna==3.4
|
| 71 |
+
# via
|
| 72 |
+
# anyio
|
| 73 |
+
# httpx
|
| 74 |
+
# requests
|
| 75 |
+
importlib-resources==6.1.0
|
| 76 |
+
# via gradio
|
| 77 |
+
jinja2==3.1.2
|
| 78 |
+
# via
|
| 79 |
+
# altair
|
| 80 |
+
# gradio
|
| 81 |
+
jsonschema==4.19.1
|
| 82 |
+
# via altair
|
| 83 |
+
jsonschema-specifications==2023.7.1
|
| 84 |
+
# via jsonschema
|
| 85 |
+
kiwisolver==1.4.5
|
| 86 |
+
# via matplotlib
|
| 87 |
+
markupsafe==2.1.3
|
| 88 |
+
# via
|
| 89 |
+
# gradio
|
| 90 |
+
# jinja2
|
| 91 |
+
matplotlib==3.8.0
|
| 92 |
+
# via gradio
|
| 93 |
+
numpy==1.26.0
|
| 94 |
+
# via
|
| 95 |
+
# altair
|
| 96 |
+
# contourpy
|
| 97 |
+
# gradio
|
| 98 |
+
# matplotlib
|
| 99 |
+
# pandas
|
| 100 |
+
orjson==3.9.7
|
| 101 |
+
# via gradio
|
| 102 |
+
packaging==23.1
|
| 103 |
+
# via
|
| 104 |
+
# altair
|
| 105 |
+
# gradio
|
| 106 |
+
# gradio-client
|
| 107 |
+
# huggingface-hub
|
| 108 |
+
# matplotlib
|
| 109 |
+
pandas==2.1.1
|
| 110 |
+
# via
|
| 111 |
+
# altair
|
| 112 |
+
# gradio
|
| 113 |
+
pillow==10.0.1
|
| 114 |
+
# via
|
| 115 |
+
# gradio
|
| 116 |
+
# matplotlib
|
| 117 |
+
pydantic==2.4.2
|
| 118 |
+
# via
|
| 119 |
+
# fastapi
|
| 120 |
+
# gradio
|
| 121 |
+
pydantic-core==2.10.1
|
| 122 |
+
# via pydantic
|
| 123 |
+
pydub==0.25.1
|
| 124 |
+
# via gradio
|
| 125 |
+
pyparsing==3.1.1
|
| 126 |
+
# via matplotlib
|
| 127 |
+
python-dateutil==2.8.2
|
| 128 |
+
# via
|
| 129 |
+
# matplotlib
|
| 130 |
+
# pandas
|
| 131 |
+
python-multipart==0.0.6
|
| 132 |
+
# via gradio
|
| 133 |
+
pytz==2023.3.post1
|
| 134 |
+
# via pandas
|
| 135 |
+
pyyaml==6.0.1
|
| 136 |
+
# via
|
| 137 |
+
# gradio
|
| 138 |
+
# huggingface-hub
|
| 139 |
+
referencing==0.30.2
|
| 140 |
+
# via
|
| 141 |
+
# jsonschema
|
| 142 |
+
# jsonschema-specifications
|
| 143 |
+
requests==2.31.0
|
| 144 |
+
# via
|
| 145 |
+
# gradio
|
| 146 |
+
# gradio-client
|
| 147 |
+
# huggingface-hub
|
| 148 |
+
rpds-py==0.10.3
|
| 149 |
+
# via
|
| 150 |
+
# jsonschema
|
| 151 |
+
# referencing
|
| 152 |
+
semantic-version==2.10.0
|
| 153 |
+
# via gradio
|
| 154 |
+
six==1.16.0
|
| 155 |
+
# via python-dateutil
|
| 156 |
+
sniffio==1.3.0
|
| 157 |
+
# via
|
| 158 |
+
# anyio
|
| 159 |
+
# httpcore
|
| 160 |
+
# httpx
|
| 161 |
+
starlette==0.27.0
|
| 162 |
+
# via fastapi
|
| 163 |
+
toolz==0.12.0
|
| 164 |
+
# via altair
|
| 165 |
+
tqdm==4.66.1
|
| 166 |
+
# via huggingface-hub
|
| 167 |
+
typing-extensions==4.8.0
|
| 168 |
+
# via
|
| 169 |
+
# fastapi
|
| 170 |
+
# gradio
|
| 171 |
+
# gradio-client
|
| 172 |
+
# huggingface-hub
|
| 173 |
+
# pydantic
|
| 174 |
+
# pydantic-core
|
| 175 |
+
tzdata==2023.3
|
| 176 |
+
# via pandas
|
| 177 |
+
urllib3==2.0.5
|
| 178 |
+
# via requests
|
| 179 |
+
uvicorn==0.23.2
|
| 180 |
+
# via gradio
|
| 181 |
+
websockets==11.0.3
|
| 182 |
+
# via
|
| 183 |
+
# gradio
|
| 184 |
+
# gradio-client
|