Initial commit

README.md

@@ -7,6 +7,7 @@ sdk: gradio
 sdk_version: 6.10.0
 app_file: app.py
 pinned: false
+python_version: 3.14.0
 short_description: Maturation status of P. lamprey using ultrasound from MY22-2
 ---
 

app.py

@@ -0,0 +1,48 @@
+import gradio as gr
+from fastai.vision.all import *
+
+from huggingface_hub import from_pretrained_fastai
+
+learn = from_pretrained_fastai("lmedeirosUI/MatStat_Oct22")
+
+labels = learn.dls.vocab
+def predict(img):
+    img = PILImage.create(img)
+    pred, pred_idx,probs = learn.predict(img)
+    return {labels[i]: float(probs[i]) for i in range(len(labels))}
+
+#predict('test.jpg') # test
+
+title = "<p style='text-align: center; font-size: 25px; font-weight: bold'>Maturation Status App for Pacific lamprey</p>"
+description = "<p style='text-align: center; font-size: 20px'>Upload an ultrasound image to determine the maturation status of a Pacific lamprey</p>"
+article="<p style='text-align: center'>App & MLM created by Lea R. Medeiros</p><p style='text-align: center'><a href='https://critfc.org/fish-and-watersheds/columbia-river-fish-species/lamprey/pacific-lamprey-restoration/' target='_blank'>Pacific Lamprey Restoration Efforts at CRITFC</a></p><p style='text-align: center'><a href='https://www.pacificlamprey.org' target='_blank'>Pacific Lamprey Conservation Initiative</a></p>"
+
+#SexID = gr.Interface(fn=predict, inputs=gr.Image(height=512, width=512), outputs=gr.Label(num_top_classes=2), title=title, description=description, examples=examples, article=article)
+
+
+with gr.Blocks() as MatStat_Oct22:
+    gr.Markdown(title)
+    gr.Markdown(description)
+    with gr.Row():
+        with gr.Column(scale=1):
+            with gr.Row():
+                gr.Markdown("<p style='text-align: center; font-size: 15px'>Upload an ultrasound image (ideally taken in the fall following collection) to the Input area and click the <span style='font-weight: bold'>Run</span> button. To upload another image, click the <span style='font-weight: bold'>Clear</span> button</p>")
+            with gr.Row():
+                inp = gr.Image(height = 430, label="Input image")
+        with gr.Column(scale=1):
+            with gr.Row():
+                out = gr.Label(num_top_classes=4, label="Maturation Status Prediction")
+            with gr.Row():
+                btn1 = gr.Button("Run", variant="primary")
+                btn1.click(fn=predict, inputs=inp, outputs=out)
+            with gr.Row():
+                gr.ClearButton([inp, out], variant="secondary")
+            with gr.Row():
+                gr.Markdown("<p style='text-align: center'>Example images - just drag and drop into the input area and click the <span style='font-weight: bold'>Run</span> button</p>")
+            with gr.Row():
+                gr.Image("test.JPG", scale=1, label="Example 1")
+                gr.Image("test2.JPG", scale=1, label="Example 2")
+    with gr.Row():
+        gr.Markdown(article)
+
+MatStat_Oct22.launch(theme=gr.themes.Soft(font=[gr.themes.GoogleFont("IBM Plex Sans"), "Arial", "sans-serif"]), ssr_mode=False)

requirements.txt

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+fastai
+scikit-image
+IPython
+toml
+gradio