Update app.py
Browse files
app.py
CHANGED
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@@ -5,6 +5,12 @@ import pandas as pd
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from groq import Groq
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from PIL import Image
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import io
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# Initialize Groq client
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client = Groq(
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@@ -17,8 +23,44 @@ def encode_image(image):
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image.save(buffered, format="JPEG")
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return base64.b64encode(buffered.getvalue()).decode('utf-8')
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# Extract ECG readings from image using Llama Vision model
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def analyze_ecg_image(image, vision_model="llama-3.2-90b-vision-preview"):
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if image is None:
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return "No image provided."
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@@ -29,8 +71,32 @@ def analyze_ecg_image(image, vision_model="llama-3.2-90b-vision-preview"):
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# Encode the image
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base64_image = encode_image(image)
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# Create chat completion with vision model
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vision_prompt = "Analyze this ECG image carefully.
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try:
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vision_completion = client.chat.completions.create(
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@@ -54,18 +120,328 @@ def analyze_ecg_image(image, vision_model="llama-3.2-90b-vision-preview"):
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)
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ecg_analysis = vision_completion.choices[0].message.content
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return ecg_analysis
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except Exception as e:
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return f"Error analyzing ECG image
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# Generate medical assessment based on ECG readings and patient history
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def generate_assessment(ecg_analysis, patient_history=None, chat_model="llama-3.3-70b-versatile"):
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if not ecg_analysis or ecg_analysis.startswith("Error"):
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return "Please analyze an ECG image first."
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# Construct prompt based on available information
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if patient_history:
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prompt = f"""You are a highly trained cardiologist assistant. Based on the ECG analysis below and the patient's history, provide a comprehensive assessment of the patient's cardiac status. Indicate clearly if there are any concerning findings that require immediate medical attention.
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ECG ANALYSIS:
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PATIENT HISTORY:
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{patient_history}
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"""
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else:
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prompt = f"""You are a highly trained cardiologist assistant. Based on the ECG analysis below, provide a comprehensive assessment of the patient's cardiac status. Indicate clearly if there are any concerning findings that require immediate medical attention.
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ECG ANALYSIS:
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{ecg_analysis}
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"""
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try:
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return f"Error generating assessment: {str(e)}"
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# Doctor's chat interaction with the model about the patient
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def doctor_chat(message, chat_history, ecg_analysis, patient_history, chat_model="llama-3.3-70b-versatile"):
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if not ecg_analysis or ecg_analysis.startswith("Error"):
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return "Please analyze an ECG image first before starting a chat.", chat_history
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# Prepare chat context
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context = f"""ECG ANALYSIS:
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{ecg_analysis}
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"""
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if patient_history:
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context += f"""PATIENT HISTORY:
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{patient_history}
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}
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]
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# Add chat history to the context
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for entry in chat_history:
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messages.append({"role": "user", "content": entry[0]})
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messages.append({"role": "assistant", "content": entry[1]})
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return "", chat_history
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# Create Gradio interface
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with gr.Blocks(title="Cardiac ECG Analysis System") as app:
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gr.Markdown("Upload an ECG image and optional patient history to get an automated analysis and assessment.")
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with gr.
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with gr.
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# Set up event handlers
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analyze_button.click(
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analyze_ecg_image,
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inputs=[ecg_image
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outputs=ecg_analysis_output
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assess_button.click(
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generate_assessment,
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inputs=[ecg_analysis_output,
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outputs=assessment_output
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chat_button.click(
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doctor_chat,
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inputs=[message, chatbot, ecg_analysis_output,
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|
| 229 |
outputs=[message, chatbot]
|
| 230 |
)
|
| 231 |
|
|
|
|
| 5 |
from groq import Groq
|
| 6 |
from PIL import Image
|
| 7 |
import io
|
| 8 |
+
import datetime
|
| 9 |
+
import re
|
| 10 |
+
from dotenv import load_dotenv
|
| 11 |
+
|
| 12 |
+
# Load environment variables from .env file
|
| 13 |
+
load_dotenv()
|
| 14 |
|
| 15 |
# Initialize Groq client
|
| 16 |
client = Groq(
|
|
|
|
| 23 |
image.save(buffered, format="JPEG")
|
| 24 |
return base64.b64encode(buffered.getvalue()).decode('utf-8')
|
| 25 |
|
| 26 |
+
# Process patient history file
|
| 27 |
+
def process_patient_history(file):
|
| 28 |
+
if file is None:
|
| 29 |
+
return ""
|
| 30 |
+
|
| 31 |
+
try:
|
| 32 |
+
# Check file extension
|
| 33 |
+
file_ext = os.path.splitext(file.name)[1].lower()
|
| 34 |
+
|
| 35 |
+
if file_ext == '.txt':
|
| 36 |
+
# Read text file
|
| 37 |
+
content = file.read().decode('utf-8')
|
| 38 |
+
return content
|
| 39 |
+
|
| 40 |
+
elif file_ext in ['.csv', '.xlsx', '.xls']:
|
| 41 |
+
# Read spreadsheet file
|
| 42 |
+
if file_ext == '.csv':
|
| 43 |
+
df = pd.read_csv(file.name)
|
| 44 |
+
else:
|
| 45 |
+
df = pd.read_excel(file.name)
|
| 46 |
+
|
| 47 |
+
# Convert dataframe to formatted string
|
| 48 |
+
formatted_data = "PATIENT INFORMATION:\n\n"
|
| 49 |
+
for column in df.columns:
|
| 50 |
+
formatted_data += f"{column}: {df.iloc[0][column]}\n"
|
| 51 |
+
|
| 52 |
+
return formatted_data
|
| 53 |
+
|
| 54 |
+
else:
|
| 55 |
+
return "Unsupported file format. Please upload a .txt, .csv, or .xlsx file."
|
| 56 |
+
|
| 57 |
+
except Exception as e:
|
| 58 |
+
return f"Error processing patient history file: {str(e)}"
|
| 59 |
+
|
| 60 |
# Extract ECG readings from image using Llama Vision model
|
| 61 |
def analyze_ecg_image(image, vision_model="llama-3.2-90b-vision-preview"):
|
| 62 |
+
# Fixed model - always use llama-3.2-90b-vision-preview
|
| 63 |
+
vision_model = "llama-3.2-90b-vision-preview"
|
| 64 |
if image is None:
|
| 65 |
return "No image provided."
|
| 66 |
|
|
|
|
| 71 |
# Encode the image
|
| 72 |
base64_image = encode_image(image)
|
| 73 |
|
| 74 |
+
# Get current timestamp
|
| 75 |
+
timestamp = datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")
|
| 76 |
+
|
| 77 |
# Create chat completion with vision model
|
| 78 |
+
vision_prompt = f"""Analyze this ECG image carefully. You are a cardiologist analyzing an electrocardiogram (ECG).
|
| 79 |
+
|
| 80 |
+
Extract and report all visible parameters, including but not limited to:
|
| 81 |
+
1. Heart rate
|
| 82 |
+
2. PR interval
|
| 83 |
+
3. QRS duration
|
| 84 |
+
4. QT/QTc interval
|
| 85 |
+
5. P wave morphology
|
| 86 |
+
6. ST segment changes
|
| 87 |
+
7. T wave morphology
|
| 88 |
+
8. Rhythm classification
|
| 89 |
+
9. Specific patterns (if any)
|
| 90 |
+
|
| 91 |
+
Report exact numerical values where visible. Format your response as a structured report with clear sections for different measurements and observations. If certain measurements aren't visible in the image, indicate that they cannot be determined.
|
| 92 |
+
|
| 93 |
+
If you notice any abnormalities or concerning patterns, highlight them clearly but avoid making definitive diagnoses.
|
| 94 |
+
|
| 95 |
+
Important formatting instructions:
|
| 96 |
+
- Use proper HTML/Markdown formatting with <strong> tags for headings or important findings
|
| 97 |
+
- Do not use asterisks (**) for emphasis - use proper HTML formatting instead
|
| 98 |
+
- Include this timestamp at the top of your report: {timestamp}
|
| 99 |
+
"""
|
| 100 |
|
| 101 |
try:
|
| 102 |
vision_completion = client.chat.completions.create(
|
|
|
|
| 120 |
)
|
| 121 |
|
| 122 |
ecg_analysis = vision_completion.choices[0].message.content
|
| 123 |
+
|
| 124 |
+
# Process the response to convert any remaining ** to HTML tags
|
| 125 |
+
ecg_analysis = re.sub(r'\*\*([^*]+)\*\*', r'<strong>\1</strong>', ecg_analysis)
|
| 126 |
+
|
| 127 |
+
# Make sure all headers are properly formatted
|
| 128 |
+
ecg_analysis = re.sub(r'^(#+)\s+(.+)
|
| 129 |
+
|
| 130 |
+
# Generate medical assessment based on ECG readings and patient history
|
| 131 |
+
def generate_assessment(ecg_analysis, patient_history=None, chat_model="llama-3.3-70b-versatile"):
|
| 132 |
+
# Fixed model - always use llama-3.3-70b-versatile
|
| 133 |
+
chat_model = "llama-3.3-70b-versatile"
|
| 134 |
+
if not ecg_analysis or ecg_analysis.startswith("Error"):
|
| 135 |
+
return "Please analyze an ECG image first."
|
| 136 |
+
|
| 137 |
+
# Get current timestamp
|
| 138 |
+
timestamp = datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")
|
| 139 |
+
|
| 140 |
+
# Construct prompt based on available information
|
| 141 |
+
if patient_history and patient_history.strip():
|
| 142 |
+
prompt = f"""You are a highly trained cardiologist assistant. Based on the ECG analysis below and the patient's history, provide a comprehensive assessment of the patient's cardiac status. Indicate clearly if there are any concerning findings that require immediate medical attention.
|
| 143 |
+
|
| 144 |
+
ECG ANALYSIS:
|
| 145 |
+
{ecg_analysis}
|
| 146 |
+
|
| 147 |
+
PATIENT HISTORY:
|
| 148 |
+
{patient_history}
|
| 149 |
+
|
| 150 |
+
TIMESTAMP: {timestamp}
|
| 151 |
+
|
| 152 |
+
Provide your assessment with proper formatting:
|
| 153 |
+
<strong>Summary of Findings</strong>
|
| 154 |
+
(Your summary here)
|
| 155 |
+
|
| 156 |
+
<strong>Key Abnormalities</strong>
|
| 157 |
+
(List any abnormalities here)
|
| 158 |
+
|
| 159 |
+
<strong>Potential Clinical Implications</strong>
|
| 160 |
+
(Describe implications here)
|
| 161 |
+
|
| 162 |
+
<strong>Recommendation</strong>
|
| 163 |
+
(Include urgency level)
|
| 164 |
+
|
| 165 |
+
<strong>Differential Considerations</strong>
|
| 166 |
+
(List differentials here)
|
| 167 |
+
|
| 168 |
+
Important formatting instructions:
|
| 169 |
+
- Use proper HTML formatting with <strong> tags for headings
|
| 170 |
+
- Do not use asterisks (**) for emphasis - use proper HTML formatting instead
|
| 171 |
+
- For any urgent findings, use <strong style="color:red"> to highlight them
|
| 172 |
+
"""
|
| 173 |
+
else:
|
| 174 |
+
prompt = f"""You are a highly trained cardiologist assistant. Based on the ECG analysis below, provide a comprehensive assessment of the patient's cardiac status. Indicate clearly if there are any concerning findings that require immediate medical attention.
|
| 175 |
+
|
| 176 |
+
ECG ANALYSIS:
|
| 177 |
+
{ecg_analysis}
|
| 178 |
+
|
| 179 |
+
TIMESTAMP: {timestamp}
|
| 180 |
+
|
| 181 |
+
Provide your assessment with proper formatting:
|
| 182 |
+
<strong>Summary of Findings</strong>
|
| 183 |
+
(Your summary here)
|
| 184 |
+
|
| 185 |
+
<strong>Key Abnormalities</strong>
|
| 186 |
+
(List any abnormalities here)
|
| 187 |
+
|
| 188 |
+
<strong>Potential Clinical Implications</strong>
|
| 189 |
+
(Describe implications here)
|
| 190 |
+
|
| 191 |
+
<strong>Recommendation</strong>
|
| 192 |
+
(Include urgency level)
|
| 193 |
+
|
| 194 |
+
<strong>Differential Considerations</strong>
|
| 195 |
+
(List differentials here)
|
| 196 |
+
|
| 197 |
+
Important formatting instructions:
|
| 198 |
+
- Use proper HTML formatting with <strong> tags for headings
|
| 199 |
+
- Do not use asterisks (**) for emphasis - use proper HTML formatting instead
|
| 200 |
+
- For any urgent findings, use <strong style="color:red"> to highlight them
|
| 201 |
+
"""
|
| 202 |
+
|
| 203 |
+
try:
|
| 204 |
+
assessment_completion = client.chat.completions.create(
|
| 205 |
+
messages=[
|
| 206 |
+
{
|
| 207 |
+
"role": "system",
|
| 208 |
+
"content": "You are a medical AI assistant specialized in cardiology. Provide accurate, clinically relevant interpretations of ECG data. If there are concerning findings that might indicate a medical emergency, clearly highlight them. Avoid definitive diagnoses but provide reasoned medical assessments based on the data provided."
|
| 209 |
+
},
|
| 210 |
+
{
|
| 211 |
+
"role": "user",
|
| 212 |
+
"content": prompt
|
| 213 |
+
}
|
| 214 |
+
],
|
| 215 |
+
model=chat_model,
|
| 216 |
+
temperature=0.2, # Lower temperature for more factual responses
|
| 217 |
+
max_completion_tokens=2048,
|
| 218 |
+
)
|
| 219 |
+
|
| 220 |
+
assessment_text = assessment_completion.choices[0].message.content
|
| 221 |
+
|
| 222 |
+
# Process the response to convert any remaining ** to HTML tags
|
| 223 |
+
assessment_text = re.sub(r'\*\*([^*]+)\*\*', r'<strong>\1</strong>', assessment_text)
|
| 224 |
+
|
| 225 |
+
# Make sure all headers are properly formatted
|
| 226 |
+
assessment_text = re.sub(r'^(#+)\s+(.+)
|
| 227 |
+
|
| 228 |
+
# Doctor's chat interaction with the model about the patient
|
| 229 |
+
def doctor_chat(message, chat_history, ecg_analysis, patient_history, assessment, chat_model="llama-3.3-70b-versatile"):
|
| 230 |
+
# Fixed model - always use llama-3.3-70b-versatile
|
| 231 |
+
chat_model = "llama-3.3-70b-versatile"
|
| 232 |
+
if not ecg_analysis or ecg_analysis.startswith("Error"):
|
| 233 |
+
return "Please analyze an ECG image first before starting a chat.", chat_history
|
| 234 |
+
|
| 235 |
+
if not message.strip():
|
| 236 |
+
return "", chat_history
|
| 237 |
+
|
| 238 |
+
# Get current timestamp
|
| 239 |
+
timestamp = datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")
|
| 240 |
+
|
| 241 |
+
# Prepare chat context
|
| 242 |
+
context = f"""ECG ANALYSIS:
|
| 243 |
+
{ecg_analysis}
|
| 244 |
+
|
| 245 |
+
MEDICAL ASSESSMENT:
|
| 246 |
+
{assessment}
|
| 247 |
+
|
| 248 |
+
TIMESTAMP: {timestamp}
|
| 249 |
+
|
| 250 |
+
"""
|
| 251 |
+
|
| 252 |
+
if patient_history and patient_history.strip():
|
| 253 |
+
context += f"""PATIENT HISTORY:
|
| 254 |
+
{patient_history}
|
| 255 |
+
|
| 256 |
+
"""
|
| 257 |
+
|
| 258 |
+
# Construct full chat history for context
|
| 259 |
+
messages = [
|
| 260 |
+
{
|
| 261 |
+
"role": "system",
|
| 262 |
+
"content": f"You are a medical AI assistant specialized in cardiology. You are helping a doctor interpret ECG results and patient data. Answer the doctor's questions based on the following information:\n\n{context}"
|
| 263 |
+
}
|
| 264 |
+
]
|
| 265 |
+
|
| 266 |
+
# Add chat history to the context (limited to last 10 exchanges to avoid token limits)
|
| 267 |
+
for entry in chat_history[-10:]:
|
| 268 |
+
messages.append({"role": "user", "content": entry[0]})
|
| 269 |
+
messages.append({"role": "assistant", "content": entry[1]})
|
| 270 |
+
|
| 271 |
+
# Add the current message
|
| 272 |
+
messages.append({"role": "user", "content": message})
|
| 273 |
+
|
| 274 |
+
try:
|
| 275 |
+
chat_completion = client.chat.completions.create(
|
| 276 |
+
messages=messages,
|
| 277 |
+
model=chat_model,
|
| 278 |
+
temperature=0.3,
|
| 279 |
+
max_completion_tokens=1024,
|
| 280 |
+
)
|
| 281 |
+
|
| 282 |
+
response = chat_completion.choices[0].message.content
|
| 283 |
+
chat_history.append((message, response))
|
| 284 |
+
return "", chat_history
|
| 285 |
+
|
| 286 |
+
except Exception as e:
|
| 287 |
+
error_message = f"Error in chat: {str(e)}"
|
| 288 |
+
chat_history.append((message, error_message))
|
| 289 |
+
return "", chat_history
|
| 290 |
+
|
| 291 |
+
# Create Gradio interface
|
| 292 |
+
with gr.Blocks(title="Cardiac ECG Analysis System", theme=gr.themes.Soft()) as app:
|
| 293 |
+
# Session state to store data
|
| 294 |
+
ecg_analysis_state = gr.State("")
|
| 295 |
+
|
| 296 |
+
gr.Markdown("# π« Cardiac ECG Analysis System")
|
| 297 |
+
gr.Markdown("Upload an ECG image and optional patient history to get an automated analysis and assessment.")
|
| 298 |
+
|
| 299 |
+
with gr.Tabs():
|
| 300 |
+
with gr.TabItem("π» Main Interface"):
|
| 301 |
+
with gr.Row():
|
| 302 |
+
with gr.Column(scale=1):
|
| 303 |
+
# Input components
|
| 304 |
+
with gr.Box():
|
| 305 |
+
gr.Markdown("### π ECG Image")
|
| 306 |
+
ecg_image = gr.Image(type="pil", label="Upload ECG Image")
|
| 307 |
+
# Display fixed model info
|
| 308 |
+
gr.Markdown("**Vision Model:** llama-3.2-90b-vision-preview")
|
| 309 |
+
analyze_button = gr.Button("Analyze ECG Image", variant="primary")
|
| 310 |
+
|
| 311 |
+
with gr.Box():
|
| 312 |
+
gr.Markdown("### π Patient Information")
|
| 313 |
+
patient_history_text = gr.Textbox(
|
| 314 |
+
lines=8,
|
| 315 |
+
label="Patient History (Manual Entry)",
|
| 316 |
+
placeholder="Enter patient's medical history, age, sex, symptoms, medications, etc."
|
| 317 |
+
)
|
| 318 |
+
patient_history_file = gr.File(
|
| 319 |
+
label="Upload Patient History File (Optional, .txt, .csv, or .xlsx)",
|
| 320 |
+
file_types=[".txt", ".csv", ".xlsx", ".xls"]
|
| 321 |
+
)
|
| 322 |
+
load_history_button = gr.Button("Load Patient History from File")
|
| 323 |
+
|
| 324 |
+
with gr.Box():
|
| 325 |
+
gr.Markdown("### π§ Assessment Settings")
|
| 326 |
+
# Display fixed model info
|
| 327 |
+
gr.Markdown("**Chat Model:** llama-3.3-70b-versatile")
|
| 328 |
+
assess_button = gr.Button("Generate Assessment", variant="primary")
|
| 329 |
+
|
| 330 |
+
with gr.Column(scale=1):
|
| 331 |
+
# Output components
|
| 332 |
+
with gr.Box():
|
| 333 |
+
gr.Markdown("### π ECG Analysis Results")
|
| 334 |
+
ecg_analysis_output = gr.HTML(label="ECG Analysis", elem_id="ecg-analysis")
|
| 335 |
+
|
| 336 |
+
with gr.Box():
|
| 337 |
+
gr.Markdown("### π Medical Assessment")
|
| 338 |
+
assessment_output = gr.HTML(label="Assessment", elem_id="assessment-output")
|
| 339 |
+
|
| 340 |
+
gr.Markdown("## π¨ββοΈ Doctor's Consultation")
|
| 341 |
+
gr.Markdown("Ask follow-up questions about the patient's ECG results and medical condition.")
|
| 342 |
+
|
| 343 |
+
with gr.Box():
|
| 344 |
+
chatbot = gr.Chatbot(label="Consultation", height=400)
|
| 345 |
+
with gr.Row():
|
| 346 |
+
message = gr.Textbox(
|
| 347 |
+
lines=2,
|
| 348 |
+
label="Doctor's Question",
|
| 349 |
+
placeholder="Ask a question about this patient's cardiac status...",
|
| 350 |
+
scale=4
|
| 351 |
+
)
|
| 352 |
+
chat_button = gr.Button("Send", scale=1, variant="primary")
|
| 353 |
+
|
| 354 |
+
with gr.TabItem("βΉοΈ Instructions"):
|
| 355 |
+
gr.Markdown("""
|
| 356 |
+
## How to Use This Application
|
| 357 |
+
|
| 358 |
+
### Step 1: Upload and Analyze ECG
|
| 359 |
+
1. Upload an ECG image using the file uploader in the Main Interface tab
|
| 360 |
+
2. Select the vision model (90b recommended for best results)
|
| 361 |
+
3. Click "Analyze ECG Image" to extract readings from the image
|
| 362 |
+
|
| 363 |
+
### Step 2: Add Patient Information (Optional)
|
| 364 |
+
- Enter patient history directly in the text box, OR
|
| 365 |
+
- Upload a patient history file (.txt, .csv, or .xlsx) and click "Load Patient History from File"
|
| 366 |
+
|
| 367 |
+
### Step 3: Generate Assessment
|
| 368 |
+
1. Select the chat model (70b recommended for detailed analysis)
|
| 369 |
+
2. Click "Generate Assessment" to get an AI-assisted interpretation
|
| 370 |
+
|
| 371 |
+
### Step 4: Consultation
|
| 372 |
+
- Use the chatbot interface to ask follow-up questions
|
| 373 |
+
- The AI will consider the ECG analysis, patient history, and previous assessment in its responses
|
| 374 |
+
|
| 375 |
+
### Important Notes
|
| 376 |
+
- This tool is designed to assist healthcare professionals, not replace clinical judgment
|
| 377 |
+
- Always validate AI-generated medical interpretations with proper medical expertise
|
| 378 |
+
- Patient data privacy should be maintained according to relevant regulations
|
| 379 |
+
""")
|
| 380 |
+
|
| 381 |
+
# Set up event handlers
|
| 382 |
+
analyze_button.click(
|
| 383 |
+
analyze_ecg_image,
|
| 384 |
+
inputs=[ecg_image],
|
| 385 |
+
outputs=ecg_analysis_output
|
| 386 |
+
).then(
|
| 387 |
+
lambda x: x, # Pass through function to update state
|
| 388 |
+
inputs=ecg_analysis_output,
|
| 389 |
+
outputs=ecg_analysis_state
|
| 390 |
+
)
|
| 391 |
+
|
| 392 |
+
def process_and_update_history(file):
|
| 393 |
+
if file is None:
|
| 394 |
+
return "No file uploaded."
|
| 395 |
+
processed_text = process_patient_history(file)
|
| 396 |
+
return processed_text
|
| 397 |
+
|
| 398 |
+
load_history_button.click(
|
| 399 |
+
process_and_update_history,
|
| 400 |
+
inputs=[patient_history_file],
|
| 401 |
+
outputs=[patient_history_text]
|
| 402 |
+
)
|
| 403 |
+
|
| 404 |
+
assess_button.click(
|
| 405 |
+
generate_assessment,
|
| 406 |
+
inputs=[ecg_analysis_output, patient_history_text],
|
| 407 |
+
outputs=assessment_output
|
| 408 |
+
)
|
| 409 |
+
|
| 410 |
+
chat_button.click(
|
| 411 |
+
doctor_chat,
|
| 412 |
+
inputs=[message, chatbot, ecg_analysis_output, patient_history_text, assessment_output],
|
| 413 |
+
outputs=[message, chatbot]
|
| 414 |
+
)
|
| 415 |
+
|
| 416 |
+
# Also trigger chat on Enter key
|
| 417 |
+
message.submit(
|
| 418 |
+
doctor_chat,
|
| 419 |
+
inputs=[message, chatbot, ecg_analysis_output, patient_history_text, assessment_output],
|
| 420 |
+
outputs=[message, chatbot]
|
| 421 |
+
)
|
| 422 |
+
|
| 423 |
+
# Launch the app
|
| 424 |
+
if __name__ == "__main__":
|
| 425 |
+
app.launch()
|
| 426 |
+
, r'<strong>\2</strong>', ecg_analysis, flags=re.MULTILINE)
|
| 427 |
+
|
| 428 |
return ecg_analysis
|
| 429 |
|
| 430 |
except Exception as e:
|
| 431 |
+
return f"<strong style='color:red'>Error analyzing ECG image:</strong> {str(e)}"
|
| 432 |
|
| 433 |
# Generate medical assessment based on ECG readings and patient history
|
| 434 |
def generate_assessment(ecg_analysis, patient_history=None, chat_model="llama-3.3-70b-versatile"):
|
| 435 |
+
# Fixed model - always use llama-3.3-70b-versatile
|
| 436 |
+
chat_model = "llama-3.3-70b-versatile"
|
| 437 |
if not ecg_analysis or ecg_analysis.startswith("Error"):
|
| 438 |
return "Please analyze an ECG image first."
|
| 439 |
|
| 440 |
+
# Get current timestamp
|
| 441 |
+
timestamp = datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")
|
| 442 |
+
|
| 443 |
# Construct prompt based on available information
|
| 444 |
+
if patient_history and patient_history.strip():
|
| 445 |
prompt = f"""You are a highly trained cardiologist assistant. Based on the ECG analysis below and the patient's history, provide a comprehensive assessment of the patient's cardiac status. Indicate clearly if there are any concerning findings that require immediate medical attention.
|
| 446 |
|
| 447 |
ECG ANALYSIS:
|
|
|
|
| 450 |
PATIENT HISTORY:
|
| 451 |
{patient_history}
|
| 452 |
|
| 453 |
+
TIMESTAMP: {timestamp}
|
| 454 |
+
|
| 455 |
+
Provide your assessment with proper formatting:
|
| 456 |
+
<strong>Summary of Findings</strong>
|
| 457 |
+
(Your summary here)
|
| 458 |
+
|
| 459 |
+
<strong>Key Abnormalities</strong>
|
| 460 |
+
(List any abnormalities here)
|
| 461 |
+
|
| 462 |
+
<strong>Potential Clinical Implications</strong>
|
| 463 |
+
(Describe implications here)
|
| 464 |
+
|
| 465 |
+
<strong>Recommendation</strong>
|
| 466 |
+
(Include urgency level)
|
| 467 |
+
|
| 468 |
+
<strong>Differential Considerations</strong>
|
| 469 |
+
(List differentials here)
|
| 470 |
+
|
| 471 |
+
Important formatting instructions:
|
| 472 |
+
- Use proper HTML formatting with <strong> tags for headings
|
| 473 |
+
- Do not use asterisks (**) for emphasis - use proper HTML formatting instead
|
| 474 |
+
- For any urgent findings, use <strong style="color:red"> to highlight them
|
| 475 |
"""
|
| 476 |
else:
|
| 477 |
prompt = f"""You are a highly trained cardiologist assistant. Based on the ECG analysis below, provide a comprehensive assessment of the patient's cardiac status. Indicate clearly if there are any concerning findings that require immediate medical attention.
|
|
|
|
| 479 |
ECG ANALYSIS:
|
| 480 |
{ecg_analysis}
|
| 481 |
|
| 482 |
+
TIMESTAMP: {timestamp}
|
| 483 |
+
|
| 484 |
+
Provide your assessment with proper formatting:
|
| 485 |
+
<strong>Summary of Findings</strong>
|
| 486 |
+
(Your summary here)
|
| 487 |
+
|
| 488 |
+
<strong>Key Abnormalities</strong>
|
| 489 |
+
(List any abnormalities here)
|
| 490 |
+
|
| 491 |
+
<strong>Potential Clinical Implications</strong>
|
| 492 |
+
(Describe implications here)
|
| 493 |
+
|
| 494 |
+
<strong>Recommendation</strong>
|
| 495 |
+
(Include urgency level)
|
| 496 |
+
|
| 497 |
+
<strong>Differential Considerations</strong>
|
| 498 |
+
(List differentials here)
|
| 499 |
+
|
| 500 |
+
Important formatting instructions:
|
| 501 |
+
- Use proper HTML formatting with <strong> tags for headings
|
| 502 |
+
- Do not use asterisks (**) for emphasis - use proper HTML formatting instead
|
| 503 |
+
- For any urgent findings, use <strong style="color:red"> to highlight them
|
| 504 |
"""
|
| 505 |
|
| 506 |
try:
|
|
|
|
| 526 |
return f"Error generating assessment: {str(e)}"
|
| 527 |
|
| 528 |
# Doctor's chat interaction with the model about the patient
|
| 529 |
+
def doctor_chat(message, chat_history, ecg_analysis, patient_history, assessment, chat_model="llama-3.3-70b-versatile"):
|
| 530 |
+
# Fixed model - always use llama-3.3-70b-versatile
|
| 531 |
+
chat_model = "llama-3.3-70b-versatile"
|
| 532 |
if not ecg_analysis or ecg_analysis.startswith("Error"):
|
| 533 |
return "Please analyze an ECG image first before starting a chat.", chat_history
|
| 534 |
|
| 535 |
+
if not message.strip():
|
| 536 |
+
return "", chat_history
|
| 537 |
+
|
| 538 |
+
# Get current timestamp
|
| 539 |
+
timestamp = datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")
|
| 540 |
+
|
| 541 |
# Prepare chat context
|
| 542 |
context = f"""ECG ANALYSIS:
|
| 543 |
{ecg_analysis}
|
| 544 |
|
| 545 |
+
MEDICAL ASSESSMENT:
|
| 546 |
+
{assessment}
|
| 547 |
+
|
| 548 |
+
TIMESTAMP: {timestamp}
|
| 549 |
+
|
| 550 |
"""
|
| 551 |
|
| 552 |
+
if patient_history and patient_history.strip():
|
| 553 |
context += f"""PATIENT HISTORY:
|
| 554 |
{patient_history}
|
| 555 |
|
|
|
|
| 563 |
}
|
| 564 |
]
|
| 565 |
|
| 566 |
+
# Add chat history to the context (limited to last 10 exchanges to avoid token limits)
|
| 567 |
+
for entry in chat_history[-10:]:
|
| 568 |
messages.append({"role": "user", "content": entry[0]})
|
| 569 |
messages.append({"role": "assistant", "content": entry[1]})
|
| 570 |
|
|
|
|
| 589 |
return "", chat_history
|
| 590 |
|
| 591 |
# Create Gradio interface
|
| 592 |
+
with gr.Blocks(title="Cardiac ECG Analysis System", theme=gr.themes.Soft()) as app:
|
| 593 |
+
# Session state to store data
|
| 594 |
+
ecg_analysis_state = gr.State("")
|
| 595 |
+
|
| 596 |
+
gr.Markdown("# π« Cardiac ECG Analysis System")
|
| 597 |
gr.Markdown("Upload an ECG image and optional patient history to get an automated analysis and assessment.")
|
| 598 |
|
| 599 |
+
with gr.Tabs():
|
| 600 |
+
with gr.TabItem("π» Main Interface"):
|
| 601 |
+
with gr.Row():
|
| 602 |
+
with gr.Column(scale=1):
|
| 603 |
+
# Input components
|
| 604 |
+
with gr.Box():
|
| 605 |
+
gr.Markdown("### π ECG Image")
|
| 606 |
+
ecg_image = gr.Image(type="pil", label="Upload ECG Image")
|
| 607 |
+
# Display fixed model info
|
| 608 |
+
gr.Markdown("**Vision Model:** llama-3.2-90b-vision-preview")
|
| 609 |
+
analyze_button = gr.Button("Analyze ECG Image", variant="primary")
|
| 610 |
+
|
| 611 |
+
with gr.Box():
|
| 612 |
+
gr.Markdown("### π Patient Information")
|
| 613 |
+
patient_history_text = gr.Textbox(
|
| 614 |
+
lines=8,
|
| 615 |
+
label="Patient History (Manual Entry)",
|
| 616 |
+
placeholder="Enter patient's medical history, age, sex, symptoms, medications, etc."
|
| 617 |
+
)
|
| 618 |
+
patient_history_file = gr.File(
|
| 619 |
+
label="Upload Patient History File (Optional, .txt, .csv, or .xlsx)",
|
| 620 |
+
file_types=[".txt", ".csv", ".xlsx", ".xls"]
|
| 621 |
+
)
|
| 622 |
+
load_history_button = gr.Button("Load Patient History from File")
|
| 623 |
+
|
| 624 |
+
with gr.Box():
|
| 625 |
+
gr.Markdown("### π§ Assessment Settings")
|
| 626 |
+
# Display fixed model info
|
| 627 |
+
gr.Markdown("**Chat Model:** llama-3.3-70b-versatile")
|
| 628 |
+
assess_button = gr.Button("Generate Assessment", variant="primary")
|
| 629 |
+
|
| 630 |
+
with gr.Column(scale=1):
|
| 631 |
+
# Output components
|
| 632 |
+
with gr.Box():
|
| 633 |
+
gr.Markdown("### π ECG Analysis Results")
|
| 634 |
+
ecg_analysis_output = gr.HTML(label="ECG Analysis", elem_id="ecg-analysis")
|
| 635 |
+
|
| 636 |
+
with gr.Box():
|
| 637 |
+
gr.Markdown("### π Medical Assessment")
|
| 638 |
+
assessment_output = gr.HTML(label="Assessment", elem_id="assessment-output")
|
| 639 |
+
|
| 640 |
+
gr.Markdown("## π¨ββοΈ Doctor's Consultation")
|
| 641 |
+
gr.Markdown("Ask follow-up questions about the patient's ECG results and medical condition.")
|
| 642 |
+
|
| 643 |
+
with gr.Box():
|
| 644 |
+
chatbot = gr.Chatbot(label="Consultation", height=400)
|
| 645 |
+
with gr.Row():
|
| 646 |
+
message = gr.Textbox(
|
| 647 |
+
lines=2,
|
| 648 |
+
label="Doctor's Question",
|
| 649 |
+
placeholder="Ask a question about this patient's cardiac status...",
|
| 650 |
+
scale=4
|
| 651 |
+
)
|
| 652 |
+
chat_button = gr.Button("Send", scale=1, variant="primary")
|
| 653 |
+
|
| 654 |
+
with gr.TabItem("βΉοΈ Instructions"):
|
| 655 |
+
gr.Markdown("""
|
| 656 |
+
## How to Use This Application
|
| 657 |
+
|
| 658 |
+
### Step 1: Upload and Analyze ECG
|
| 659 |
+
1. Upload an ECG image using the file uploader in the Main Interface tab
|
| 660 |
+
2. Select the vision model (90b recommended for best results)
|
| 661 |
+
3. Click "Analyze ECG Image" to extract readings from the image
|
| 662 |
+
|
| 663 |
+
### Step 2: Add Patient Information (Optional)
|
| 664 |
+
- Enter patient history directly in the text box, OR
|
| 665 |
+
- Upload a patient history file (.txt, .csv, or .xlsx) and click "Load Patient History from File"
|
| 666 |
+
|
| 667 |
+
### Step 3: Generate Assessment
|
| 668 |
+
1. Select the chat model (70b recommended for detailed analysis)
|
| 669 |
+
2. Click "Generate Assessment" to get an AI-assisted interpretation
|
| 670 |
+
|
| 671 |
+
### Step 4: Consultation
|
| 672 |
+
- Use the chatbot interface to ask follow-up questions
|
| 673 |
+
- The AI will consider the ECG analysis, patient history, and previous assessment in its responses
|
| 674 |
+
|
| 675 |
+
### Important Notes
|
| 676 |
+
- This tool is designed to assist healthcare professionals, not replace clinical judgment
|
| 677 |
+
- Always validate AI-generated medical interpretations with proper medical expertise
|
| 678 |
+
- Patient data privacy should be maintained according to relevant regulations
|
| 679 |
+
""")
|
| 680 |
|
| 681 |
# Set up event handlers
|
| 682 |
analyze_button.click(
|
| 683 |
analyze_ecg_image,
|
| 684 |
+
inputs=[ecg_image],
|
| 685 |
outputs=ecg_analysis_output
|
| 686 |
+
).then(
|
| 687 |
+
lambda x: x, # Pass through function to update state
|
| 688 |
+
inputs=ecg_analysis_output,
|
| 689 |
+
outputs=ecg_analysis_state
|
| 690 |
+
)
|
| 691 |
+
|
| 692 |
+
def process_and_update_history(file):
|
| 693 |
+
if file is None:
|
| 694 |
+
return "No file uploaded."
|
| 695 |
+
processed_text = process_patient_history(file)
|
| 696 |
+
return processed_text
|
| 697 |
+
|
| 698 |
+
load_history_button.click(
|
| 699 |
+
process_and_update_history,
|
| 700 |
+
inputs=[patient_history_file],
|
| 701 |
+
outputs=[patient_history_text]
|
| 702 |
)
|
| 703 |
|
| 704 |
assess_button.click(
|
| 705 |
generate_assessment,
|
| 706 |
+
inputs=[ecg_analysis_output, patient_history_text],
|
| 707 |
outputs=assessment_output
|
| 708 |
)
|
| 709 |
|
| 710 |
chat_button.click(
|
| 711 |
doctor_chat,
|
| 712 |
+
inputs=[message, chatbot, ecg_analysis_output, patient_history_text, assessment_output],
|
| 713 |
+
outputs=[message, chatbot]
|
| 714 |
+
)
|
| 715 |
+
|
| 716 |
+
# Also trigger chat on Enter key
|
| 717 |
+
message.submit(
|
| 718 |
+
doctor_chat,
|
| 719 |
+
inputs=[message, chatbot, ecg_analysis_output, patient_history_text, assessment_output],
|
| 720 |
+
outputs=[message, chatbot]
|
| 721 |
+
)
|
| 722 |
+
|
| 723 |
+
# Launch the app
|
| 724 |
+
if __name__ == "__main__":
|
| 725 |
+
app.launch()
|
| 726 |
+
, r'<strong>\2</strong>', assessment_text, flags=re.MULTILINE)
|
| 727 |
+
|
| 728 |
+
return assessment_text
|
| 729 |
+
|
| 730 |
+
except Exception as e:
|
| 731 |
+
return f"<strong style='color:red'>Error generating assessment:</strong> {str(e)}"
|
| 732 |
+
|
| 733 |
+
# Doctor's chat interaction with the model about the patient
|
| 734 |
+
def doctor_chat(message, chat_history, ecg_analysis, patient_history, assessment, chat_model="llama-3.3-70b-versatile"):
|
| 735 |
+
# Fixed model - always use llama-3.3-70b-versatile
|
| 736 |
+
chat_model = "llama-3.3-70b-versatile"
|
| 737 |
+
if not ecg_analysis or ecg_analysis.startswith("Error"):
|
| 738 |
+
return "Please analyze an ECG image first before starting a chat.", chat_history
|
| 739 |
+
|
| 740 |
+
if not message.strip():
|
| 741 |
+
return "", chat_history
|
| 742 |
+
|
| 743 |
+
# Get current timestamp
|
| 744 |
+
timestamp = datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")
|
| 745 |
+
|
| 746 |
+
# Prepare chat context
|
| 747 |
+
context = f"""ECG ANALYSIS:
|
| 748 |
+
{ecg_analysis}
|
| 749 |
+
|
| 750 |
+
MEDICAL ASSESSMENT:
|
| 751 |
+
{assessment}
|
| 752 |
+
|
| 753 |
+
TIMESTAMP: {timestamp}
|
| 754 |
+
|
| 755 |
+
"""
|
| 756 |
+
|
| 757 |
+
if patient_history and patient_history.strip():
|
| 758 |
+
context += f"""PATIENT HISTORY:
|
| 759 |
+
{patient_history}
|
| 760 |
+
|
| 761 |
+
"""
|
| 762 |
+
|
| 763 |
+
# Construct full chat history for context
|
| 764 |
+
messages = [
|
| 765 |
+
{
|
| 766 |
+
"role": "system",
|
| 767 |
+
"content": f"You are a medical AI assistant specialized in cardiology. You are helping a doctor interpret ECG results and patient data. Answer the doctor's questions based on the following information:\n\n{context}"
|
| 768 |
+
}
|
| 769 |
+
]
|
| 770 |
+
|
| 771 |
+
# Add chat history to the context (limited to last 10 exchanges to avoid token limits)
|
| 772 |
+
for entry in chat_history[-10:]:
|
| 773 |
+
messages.append({"role": "user", "content": entry[0]})
|
| 774 |
+
messages.append({"role": "assistant", "content": entry[1]})
|
| 775 |
+
|
| 776 |
+
# Add the current message
|
| 777 |
+
messages.append({"role": "user", "content": message})
|
| 778 |
+
|
| 779 |
+
try:
|
| 780 |
+
chat_completion = client.chat.completions.create(
|
| 781 |
+
messages=messages,
|
| 782 |
+
model=chat_model,
|
| 783 |
+
temperature=0.3,
|
| 784 |
+
max_completion_tokens=1024,
|
| 785 |
+
)
|
| 786 |
+
|
| 787 |
+
response = chat_completion.choices[0].message.content
|
| 788 |
+
chat_history.append((message, response))
|
| 789 |
+
return "", chat_history
|
| 790 |
+
|
| 791 |
+
except Exception as e:
|
| 792 |
+
error_message = f"Error in chat: {str(e)}"
|
| 793 |
+
chat_history.append((message, error_message))
|
| 794 |
+
return "", chat_history
|
| 795 |
+
|
| 796 |
+
# Create Gradio interface
|
| 797 |
+
with gr.Blocks(title="Cardiac ECG Analysis System", theme=gr.themes.Soft()) as app:
|
| 798 |
+
# Session state to store data
|
| 799 |
+
ecg_analysis_state = gr.State("")
|
| 800 |
+
|
| 801 |
+
gr.Markdown("# π« Cardiac ECG Analysis System")
|
| 802 |
+
gr.Markdown("Upload an ECG image and optional patient history to get an automated analysis and assessment.")
|
| 803 |
+
|
| 804 |
+
with gr.Tabs():
|
| 805 |
+
with gr.TabItem("π» Main Interface"):
|
| 806 |
+
with gr.Row():
|
| 807 |
+
with gr.Column(scale=1):
|
| 808 |
+
# Input components
|
| 809 |
+
with gr.Box():
|
| 810 |
+
gr.Markdown("### π ECG Image")
|
| 811 |
+
ecg_image = gr.Image(type="pil", label="Upload ECG Image")
|
| 812 |
+
# Display fixed model info
|
| 813 |
+
gr.Markdown("**Vision Model:** llama-3.2-90b-vision-preview")
|
| 814 |
+
analyze_button = gr.Button("Analyze ECG Image", variant="primary")
|
| 815 |
+
|
| 816 |
+
with gr.Box():
|
| 817 |
+
gr.Markdown("### π Patient Information")
|
| 818 |
+
patient_history_text = gr.Textbox(
|
| 819 |
+
lines=8,
|
| 820 |
+
label="Patient History (Manual Entry)",
|
| 821 |
+
placeholder="Enter patient's medical history, age, sex, symptoms, medications, etc."
|
| 822 |
+
)
|
| 823 |
+
patient_history_file = gr.File(
|
| 824 |
+
label="Upload Patient History File (Optional, .txt, .csv, or .xlsx)",
|
| 825 |
+
file_types=[".txt", ".csv", ".xlsx", ".xls"]
|
| 826 |
+
)
|
| 827 |
+
load_history_button = gr.Button("Load Patient History from File")
|
| 828 |
+
|
| 829 |
+
with gr.Box():
|
| 830 |
+
gr.Markdown("### π§ Assessment Settings")
|
| 831 |
+
# Display fixed model info
|
| 832 |
+
gr.Markdown("**Chat Model:** llama-3.3-70b-versatile")
|
| 833 |
+
assess_button = gr.Button("Generate Assessment", variant="primary")
|
| 834 |
+
|
| 835 |
+
with gr.Column(scale=1):
|
| 836 |
+
# Output components
|
| 837 |
+
with gr.Box():
|
| 838 |
+
gr.Markdown("### π ECG Analysis Results")
|
| 839 |
+
ecg_analysis_output = gr.HTML(label="ECG Analysis", elem_id="ecg-analysis")
|
| 840 |
+
|
| 841 |
+
with gr.Box():
|
| 842 |
+
gr.Markdown("### π Medical Assessment")
|
| 843 |
+
assessment_output = gr.HTML(label="Assessment", elem_id="assessment-output")
|
| 844 |
+
|
| 845 |
+
gr.Markdown("## π¨ββοΈ Doctor's Consultation")
|
| 846 |
+
gr.Markdown("Ask follow-up questions about the patient's ECG results and medical condition.")
|
| 847 |
+
|
| 848 |
+
with gr.Box():
|
| 849 |
+
chatbot = gr.Chatbot(label="Consultation", height=400)
|
| 850 |
+
with gr.Row():
|
| 851 |
+
message = gr.Textbox(
|
| 852 |
+
lines=2,
|
| 853 |
+
label="Doctor's Question",
|
| 854 |
+
placeholder="Ask a question about this patient's cardiac status...",
|
| 855 |
+
scale=4
|
| 856 |
+
)
|
| 857 |
+
chat_button = gr.Button("Send", scale=1, variant="primary")
|
| 858 |
+
|
| 859 |
+
with gr.TabItem("βΉοΈ Instructions"):
|
| 860 |
+
gr.Markdown("""
|
| 861 |
+
## How to Use This Application
|
| 862 |
+
|
| 863 |
+
### Step 1: Upload and Analyze ECG
|
| 864 |
+
1. Upload an ECG image using the file uploader in the Main Interface tab
|
| 865 |
+
2. Select the vision model (90b recommended for best results)
|
| 866 |
+
3. Click "Analyze ECG Image" to extract readings from the image
|
| 867 |
+
|
| 868 |
+
### Step 2: Add Patient Information (Optional)
|
| 869 |
+
- Enter patient history directly in the text box, OR
|
| 870 |
+
- Upload a patient history file (.txt, .csv, or .xlsx) and click "Load Patient History from File"
|
| 871 |
+
|
| 872 |
+
### Step 3: Generate Assessment
|
| 873 |
+
1. Select the chat model (70b recommended for detailed analysis)
|
| 874 |
+
2. Click "Generate Assessment" to get an AI-assisted interpretation
|
| 875 |
+
|
| 876 |
+
### Step 4: Consultation
|
| 877 |
+
- Use the chatbot interface to ask follow-up questions
|
| 878 |
+
- The AI will consider the ECG analysis, patient history, and previous assessment in its responses
|
| 879 |
+
|
| 880 |
+
### Important Notes
|
| 881 |
+
- This tool is designed to assist healthcare professionals, not replace clinical judgment
|
| 882 |
+
- Always validate AI-generated medical interpretations with proper medical expertise
|
| 883 |
+
- Patient data privacy should be maintained according to relevant regulations
|
| 884 |
+
""")
|
| 885 |
+
|
| 886 |
+
# Set up event handlers
|
| 887 |
+
analyze_button.click(
|
| 888 |
+
analyze_ecg_image,
|
| 889 |
+
inputs=[ecg_image],
|
| 890 |
+
outputs=ecg_analysis_output
|
| 891 |
+
).then(
|
| 892 |
+
lambda x: x, # Pass through function to update state
|
| 893 |
+
inputs=ecg_analysis_output,
|
| 894 |
+
outputs=ecg_analysis_state
|
| 895 |
+
)
|
| 896 |
+
|
| 897 |
+
def process_and_update_history(file):
|
| 898 |
+
if file is None:
|
| 899 |
+
return "No file uploaded."
|
| 900 |
+
processed_text = process_patient_history(file)
|
| 901 |
+
return processed_text
|
| 902 |
+
|
| 903 |
+
load_history_button.click(
|
| 904 |
+
process_and_update_history,
|
| 905 |
+
inputs=[patient_history_file],
|
| 906 |
+
outputs=[patient_history_text]
|
| 907 |
+
)
|
| 908 |
+
|
| 909 |
+
assess_button.click(
|
| 910 |
+
generate_assessment,
|
| 911 |
+
inputs=[ecg_analysis_output, patient_history_text],
|
| 912 |
+
outputs=assessment_output
|
| 913 |
+
)
|
| 914 |
+
|
| 915 |
+
chat_button.click(
|
| 916 |
+
doctor_chat,
|
| 917 |
+
inputs=[message, chatbot, ecg_analysis_output, patient_history_text, assessment_output],
|
| 918 |
+
outputs=[message, chatbot]
|
| 919 |
+
)
|
| 920 |
+
|
| 921 |
+
# Also trigger chat on Enter key
|
| 922 |
+
message.submit(
|
| 923 |
+
doctor_chat,
|
| 924 |
+
inputs=[message, chatbot, ecg_analysis_output, patient_history_text, assessment_output],
|
| 925 |
+
outputs=[message, chatbot]
|
| 926 |
+
)
|
| 927 |
+
|
| 928 |
+
# Launch the app
|
| 929 |
+
if __name__ == "__main__":
|
| 930 |
+
app.launch()
|
| 931 |
+
, r'<strong>\2</strong>', ecg_analysis, flags=re.MULTILINE)
|
| 932 |
+
|
| 933 |
+
return ecg_analysis
|
| 934 |
+
|
| 935 |
+
except Exception as e:
|
| 936 |
+
return f"<strong style='color:red'>Error analyzing ECG image:</strong> {str(e)}"
|
| 937 |
+
|
| 938 |
+
# Generate medical assessment based on ECG readings and patient history
|
| 939 |
+
def generate_assessment(ecg_analysis, patient_history=None, chat_model="llama-3.3-70b-versatile"):
|
| 940 |
+
# Fixed model - always use llama-3.3-70b-versatile
|
| 941 |
+
chat_model = "llama-3.3-70b-versatile"
|
| 942 |
+
if not ecg_analysis or ecg_analysis.startswith("Error"):
|
| 943 |
+
return "Please analyze an ECG image first."
|
| 944 |
+
|
| 945 |
+
# Get current timestamp
|
| 946 |
+
timestamp = datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")
|
| 947 |
+
|
| 948 |
+
# Construct prompt based on available information
|
| 949 |
+
if patient_history and patient_history.strip():
|
| 950 |
+
prompt = f"""You are a highly trained cardiologist assistant. Based on the ECG analysis below and the patient's history, provide a comprehensive assessment of the patient's cardiac status. Indicate clearly if there are any concerning findings that require immediate medical attention.
|
| 951 |
+
|
| 952 |
+
ECG ANALYSIS:
|
| 953 |
+
{ecg_analysis}
|
| 954 |
+
|
| 955 |
+
PATIENT HISTORY:
|
| 956 |
+
{patient_history}
|
| 957 |
+
|
| 958 |
+
TIMESTAMP: {timestamp}
|
| 959 |
+
|
| 960 |
+
Provide your assessment with proper formatting:
|
| 961 |
+
<strong>Summary of Findings</strong>
|
| 962 |
+
(Your summary here)
|
| 963 |
+
|
| 964 |
+
<strong>Key Abnormalities</strong>
|
| 965 |
+
(List any abnormalities here)
|
| 966 |
+
|
| 967 |
+
<strong>Potential Clinical Implications</strong>
|
| 968 |
+
(Describe implications here)
|
| 969 |
+
|
| 970 |
+
<strong>Recommendation</strong>
|
| 971 |
+
(Include urgency level)
|
| 972 |
+
|
| 973 |
+
<strong>Differential Considerations</strong>
|
| 974 |
+
(List differentials here)
|
| 975 |
+
|
| 976 |
+
Important formatting instructions:
|
| 977 |
+
- Use proper HTML formatting with <strong> tags for headings
|
| 978 |
+
- Do not use asterisks (**) for emphasis - use proper HTML formatting instead
|
| 979 |
+
- For any urgent findings, use <strong style="color:red"> to highlight them
|
| 980 |
+
"""
|
| 981 |
+
else:
|
| 982 |
+
prompt = f"""You are a highly trained cardiologist assistant. Based on the ECG analysis below, provide a comprehensive assessment of the patient's cardiac status. Indicate clearly if there are any concerning findings that require immediate medical attention.
|
| 983 |
+
|
| 984 |
+
ECG ANALYSIS:
|
| 985 |
+
{ecg_analysis}
|
| 986 |
+
|
| 987 |
+
TIMESTAMP: {timestamp}
|
| 988 |
+
|
| 989 |
+
Provide your assessment with proper formatting:
|
| 990 |
+
<strong>Summary of Findings</strong>
|
| 991 |
+
(Your summary here)
|
| 992 |
+
|
| 993 |
+
<strong>Key Abnormalities</strong>
|
| 994 |
+
(List any abnormalities here)
|
| 995 |
+
|
| 996 |
+
<strong>Potential Clinical Implications</strong>
|
| 997 |
+
(Describe implications here)
|
| 998 |
+
|
| 999 |
+
<strong>Recommendation</strong>
|
| 1000 |
+
(Include urgency level)
|
| 1001 |
+
|
| 1002 |
+
<strong>Differential Considerations</strong>
|
| 1003 |
+
(List differentials here)
|
| 1004 |
+
|
| 1005 |
+
Important formatting instructions:
|
| 1006 |
+
- Use proper HTML formatting with <strong> tags for headings
|
| 1007 |
+
- Do not use asterisks (**) for emphasis - use proper HTML formatting instead
|
| 1008 |
+
- For any urgent findings, use <strong style="color:red"> to highlight them
|
| 1009 |
+
"""
|
| 1010 |
+
|
| 1011 |
+
try:
|
| 1012 |
+
assessment_completion = client.chat.completions.create(
|
| 1013 |
+
messages=[
|
| 1014 |
+
{
|
| 1015 |
+
"role": "system",
|
| 1016 |
+
"content": "You are a medical AI assistant specialized in cardiology. Provide accurate, clinically relevant interpretations of ECG data. If there are concerning findings that might indicate a medical emergency, clearly highlight them. Avoid definitive diagnoses but provide reasoned medical assessments based on the data provided."
|
| 1017 |
+
},
|
| 1018 |
+
{
|
| 1019 |
+
"role": "user",
|
| 1020 |
+
"content": prompt
|
| 1021 |
+
}
|
| 1022 |
+
],
|
| 1023 |
+
model=chat_model,
|
| 1024 |
+
temperature=0.2, # Lower temperature for more factual responses
|
| 1025 |
+
max_completion_tokens=2048,
|
| 1026 |
+
)
|
| 1027 |
+
|
| 1028 |
+
return assessment_completion.choices[0].message.content
|
| 1029 |
+
|
| 1030 |
+
except Exception as e:
|
| 1031 |
+
return f"Error generating assessment: {str(e)}"
|
| 1032 |
+
|
| 1033 |
+
# Doctor's chat interaction with the model about the patient
|
| 1034 |
+
def doctor_chat(message, chat_history, ecg_analysis, patient_history, assessment, chat_model="llama-3.3-70b-versatile"):
|
| 1035 |
+
# Fixed model - always use llama-3.3-70b-versatile
|
| 1036 |
+
chat_model = "llama-3.3-70b-versatile"
|
| 1037 |
+
if not ecg_analysis or ecg_analysis.startswith("Error"):
|
| 1038 |
+
return "Please analyze an ECG image first before starting a chat.", chat_history
|
| 1039 |
+
|
| 1040 |
+
if not message.strip():
|
| 1041 |
+
return "", chat_history
|
| 1042 |
+
|
| 1043 |
+
# Get current timestamp
|
| 1044 |
+
timestamp = datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")
|
| 1045 |
+
|
| 1046 |
+
# Prepare chat context
|
| 1047 |
+
context = f"""ECG ANALYSIS:
|
| 1048 |
+
{ecg_analysis}
|
| 1049 |
+
|
| 1050 |
+
MEDICAL ASSESSMENT:
|
| 1051 |
+
{assessment}
|
| 1052 |
+
|
| 1053 |
+
TIMESTAMP: {timestamp}
|
| 1054 |
+
|
| 1055 |
+
"""
|
| 1056 |
+
|
| 1057 |
+
if patient_history and patient_history.strip():
|
| 1058 |
+
context += f"""PATIENT HISTORY:
|
| 1059 |
+
{patient_history}
|
| 1060 |
+
|
| 1061 |
+
"""
|
| 1062 |
+
|
| 1063 |
+
# Construct full chat history for context
|
| 1064 |
+
messages = [
|
| 1065 |
+
{
|
| 1066 |
+
"role": "system",
|
| 1067 |
+
"content": f"You are a medical AI assistant specialized in cardiology. You are helping a doctor interpret ECG results and patient data. Answer the doctor's questions based on the following information:\n\n{context}"
|
| 1068 |
+
}
|
| 1069 |
+
]
|
| 1070 |
+
|
| 1071 |
+
# Add chat history to the context (limited to last 10 exchanges to avoid token limits)
|
| 1072 |
+
for entry in chat_history[-10:]:
|
| 1073 |
+
messages.append({"role": "user", "content": entry[0]})
|
| 1074 |
+
messages.append({"role": "assistant", "content": entry[1]})
|
| 1075 |
+
|
| 1076 |
+
# Add the current message
|
| 1077 |
+
messages.append({"role": "user", "content": message})
|
| 1078 |
+
|
| 1079 |
+
try:
|
| 1080 |
+
chat_completion = client.chat.completions.create(
|
| 1081 |
+
messages=messages,
|
| 1082 |
+
model=chat_model,
|
| 1083 |
+
temperature=0.3,
|
| 1084 |
+
max_completion_tokens=1024,
|
| 1085 |
+
)
|
| 1086 |
+
|
| 1087 |
+
response = chat_completion.choices[0].message.content
|
| 1088 |
+
chat_history.append((message, response))
|
| 1089 |
+
return "", chat_history
|
| 1090 |
+
|
| 1091 |
+
except Exception as e:
|
| 1092 |
+
error_message = f"Error in chat: {str(e)}"
|
| 1093 |
+
chat_history.append((message, error_message))
|
| 1094 |
+
return "", chat_history
|
| 1095 |
+
|
| 1096 |
+
# Create Gradio interface
|
| 1097 |
+
with gr.Blocks(title="Cardiac ECG Analysis System", theme=gr.themes.Soft()) as app:
|
| 1098 |
+
# Session state to store data
|
| 1099 |
+
ecg_analysis_state = gr.State("")
|
| 1100 |
+
|
| 1101 |
+
gr.Markdown("# π« Cardiac ECG Analysis System")
|
| 1102 |
+
gr.Markdown("Upload an ECG image and optional patient history to get an automated analysis and assessment.")
|
| 1103 |
+
|
| 1104 |
+
with gr.Tabs():
|
| 1105 |
+
with gr.TabItem("π» Main Interface"):
|
| 1106 |
+
with gr.Row():
|
| 1107 |
+
with gr.Column(scale=1):
|
| 1108 |
+
# Input components
|
| 1109 |
+
with gr.Box():
|
| 1110 |
+
gr.Markdown("### π ECG Image")
|
| 1111 |
+
ecg_image = gr.Image(type="pil", label="Upload ECG Image")
|
| 1112 |
+
# Display fixed model info
|
| 1113 |
+
gr.Markdown("**Vision Model:** llama-3.2-90b-vision-preview")
|
| 1114 |
+
analyze_button = gr.Button("Analyze ECG Image", variant="primary")
|
| 1115 |
+
|
| 1116 |
+
with gr.Box():
|
| 1117 |
+
gr.Markdown("### π Patient Information")
|
| 1118 |
+
patient_history_text = gr.Textbox(
|
| 1119 |
+
lines=8,
|
| 1120 |
+
label="Patient History (Manual Entry)",
|
| 1121 |
+
placeholder="Enter patient's medical history, age, sex, symptoms, medications, etc."
|
| 1122 |
+
)
|
| 1123 |
+
patient_history_file = gr.File(
|
| 1124 |
+
label="Upload Patient History File (Optional, .txt, .csv, or .xlsx)",
|
| 1125 |
+
file_types=[".txt", ".csv", ".xlsx", ".xls"]
|
| 1126 |
+
)
|
| 1127 |
+
load_history_button = gr.Button("Load Patient History from File")
|
| 1128 |
+
|
| 1129 |
+
with gr.Box():
|
| 1130 |
+
gr.Markdown("### π§ Assessment Settings")
|
| 1131 |
+
# Display fixed model info
|
| 1132 |
+
gr.Markdown("**Chat Model:** llama-3.3-70b-versatile")
|
| 1133 |
+
assess_button = gr.Button("Generate Assessment", variant="primary")
|
| 1134 |
+
|
| 1135 |
+
with gr.Column(scale=1):
|
| 1136 |
+
# Output components
|
| 1137 |
+
with gr.Box():
|
| 1138 |
+
gr.Markdown("### π ECG Analysis Results")
|
| 1139 |
+
ecg_analysis_output = gr.HTML(label="ECG Analysis", elem_id="ecg-analysis")
|
| 1140 |
+
|
| 1141 |
+
with gr.Box():
|
| 1142 |
+
gr.Markdown("### π Medical Assessment")
|
| 1143 |
+
assessment_output = gr.HTML(label="Assessment", elem_id="assessment-output")
|
| 1144 |
+
|
| 1145 |
+
gr.Markdown("## π¨ββοΈ Doctor's Consultation")
|
| 1146 |
+
gr.Markdown("Ask follow-up questions about the patient's ECG results and medical condition.")
|
| 1147 |
+
|
| 1148 |
+
with gr.Box():
|
| 1149 |
+
chatbot = gr.Chatbot(label="Consultation", height=400)
|
| 1150 |
+
with gr.Row():
|
| 1151 |
+
message = gr.Textbox(
|
| 1152 |
+
lines=2,
|
| 1153 |
+
label="Doctor's Question",
|
| 1154 |
+
placeholder="Ask a question about this patient's cardiac status...",
|
| 1155 |
+
scale=4
|
| 1156 |
+
)
|
| 1157 |
+
chat_button = gr.Button("Send", scale=1, variant="primary")
|
| 1158 |
+
|
| 1159 |
+
with gr.TabItem("βΉοΈ Instructions"):
|
| 1160 |
+
gr.Markdown("""
|
| 1161 |
+
## How to Use This Application
|
| 1162 |
+
|
| 1163 |
+
### Step 1: Upload and Analyze ECG
|
| 1164 |
+
1. Upload an ECG image using the file uploader in the Main Interface tab
|
| 1165 |
+
2. Select the vision model (90b recommended for best results)
|
| 1166 |
+
3. Click "Analyze ECG Image" to extract readings from the image
|
| 1167 |
+
|
| 1168 |
+
### Step 2: Add Patient Information (Optional)
|
| 1169 |
+
- Enter patient history directly in the text box, OR
|
| 1170 |
+
- Upload a patient history file (.txt, .csv, or .xlsx) and click "Load Patient History from File"
|
| 1171 |
+
|
| 1172 |
+
### Step 3: Generate Assessment
|
| 1173 |
+
1. Select the chat model (70b recommended for detailed analysis)
|
| 1174 |
+
2. Click "Generate Assessment" to get an AI-assisted interpretation
|
| 1175 |
+
|
| 1176 |
+
### Step 4: Consultation
|
| 1177 |
+
- Use the chatbot interface to ask follow-up questions
|
| 1178 |
+
- The AI will consider the ECG analysis, patient history, and previous assessment in its responses
|
| 1179 |
+
|
| 1180 |
+
### Important Notes
|
| 1181 |
+
- This tool is designed to assist healthcare professionals, not replace clinical judgment
|
| 1182 |
+
- Always validate AI-generated medical interpretations with proper medical expertise
|
| 1183 |
+
- Patient data privacy should be maintained according to relevant regulations
|
| 1184 |
+
""")
|
| 1185 |
+
|
| 1186 |
+
# Set up event handlers
|
| 1187 |
+
analyze_button.click(
|
| 1188 |
+
analyze_ecg_image,
|
| 1189 |
+
inputs=[ecg_image],
|
| 1190 |
+
outputs=ecg_analysis_output
|
| 1191 |
+
).then(
|
| 1192 |
+
lambda x: x, # Pass through function to update state
|
| 1193 |
+
inputs=ecg_analysis_output,
|
| 1194 |
+
outputs=ecg_analysis_state
|
| 1195 |
+
)
|
| 1196 |
+
|
| 1197 |
+
def process_and_update_history(file):
|
| 1198 |
+
if file is None:
|
| 1199 |
+
return "No file uploaded."
|
| 1200 |
+
processed_text = process_patient_history(file)
|
| 1201 |
+
return processed_text
|
| 1202 |
+
|
| 1203 |
+
load_history_button.click(
|
| 1204 |
+
process_and_update_history,
|
| 1205 |
+
inputs=[patient_history_file],
|
| 1206 |
+
outputs=[patient_history_text]
|
| 1207 |
+
)
|
| 1208 |
+
|
| 1209 |
+
assess_button.click(
|
| 1210 |
+
generate_assessment,
|
| 1211 |
+
inputs=[ecg_analysis_output, patient_history_text],
|
| 1212 |
+
outputs=assessment_output
|
| 1213 |
+
)
|
| 1214 |
+
|
| 1215 |
+
chat_button.click(
|
| 1216 |
+
doctor_chat,
|
| 1217 |
+
inputs=[message, chatbot, ecg_analysis_output, patient_history_text, assessment_output],
|
| 1218 |
+
outputs=[message, chatbot]
|
| 1219 |
+
)
|
| 1220 |
+
|
| 1221 |
+
# Also trigger chat on Enter key
|
| 1222 |
+
message.submit(
|
| 1223 |
+
doctor_chat,
|
| 1224 |
+
inputs=[message, chatbot, ecg_analysis_output, patient_history_text, assessment_output],
|
| 1225 |
outputs=[message, chatbot]
|
| 1226 |
)
|
| 1227 |
|