.pre-commit-config.yaml

repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
  rev: v5.0.0
  hooks:
    - id: trailing-whitespace
    - id: end-of-file-fixer
    - id: check-yaml
    - id: check-added-large-files
- repo: https://github.com/astral-sh/ruff-pre-commit
  rev: v0.9.10
  hooks:
    - id: ruff
      args: [ --fix ]
    - id: ruff-format
# # https://github.com/astral-sh/ty/issues/269
# - repo: local
#   hooks:
#     - id: ty-check
#       name: ty-check
#       language: python
#       entry: uv run ty check
#       pass_filenames: false
#       args: [--python=.venv/]
#       additional_dependencies: [ty]
- repo: https://github.com/fpgmaas/deptry.git
  rev: "0.23.0"
  hooks:
    - id: deptry
      name: deptry for lynxkite-bio
      entry: bash -c 'cd lynxkite-bio && uv run deptry .'
    - id: deptry
      name: deptry for lynxkite-llm-training
      entry: bash -c 'cd lynxkite-llm-training && uv run deptry .'