Sync from GitHub (preserve manual model files)
Browse files- StreamlitApp/utils/predict.py +6 -72
- requirements.txt +1 -2
StreamlitApp/utils/predict.py
CHANGED
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@@ -1,12 +1,8 @@
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import os
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import pathlib
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import requests
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import numpy as np
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import torch
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import streamlit as st
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from torch import nn
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from typing import Optional
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import shutil
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# Model Definition
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class FastMLP(nn.Module):
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@@ -24,21 +20,6 @@ class FastMLP(nn.Module):
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def forward(self, x):
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return self.layers(x)
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# Utility: download file from URL to local path (streaming)
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def _download_file(url: str, dest_path: str):
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dest = pathlib.Path(dest_path)
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dest.parent.mkdir(parents=True, exist_ok=True)
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with requests.get(url, stream=True) as r:
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r.raise_for_status()
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with open(dest, 'wb') as f:
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for chunk in r.iter_content(chunk_size=8192):
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if chunk:
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f.write(chunk)
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def _get_env(key: str) -> Optional[str]:
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v = os.environ.get(key)
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return v if v else None
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# Model Loader
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@st.cache_resource
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def load_model():
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@@ -53,60 +34,13 @@ def load_model():
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]
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model_path = next((p for p in candidates if p.exists()), candidates[0])
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# If the model file doesn't exist, try to download it from a configured URL
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if not model_path.exists():
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except Exception as e:
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st.error(f"Failed to download model from MODEL_URL: {e}")
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raise
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else:
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# Fall back to Hugging Face Hub model repo download.
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# Configure these in HF Space secrets/vars, or locally in env:
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# - MODEL_REPO_ID (e.g. "m0ksh/peptideai-models")
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# - MODEL_FILENAME (default: "ampMLModel.pt")
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model_repo_id = _get_env("MODEL_REPO_ID")
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model_filename = _get_env("MODEL_FILENAME") or "ampMLModel.pt"
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if not model_repo_id:
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raise FileNotFoundError(
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"Model file './models/ampMLModel.pt' not found.\n"
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"Set one of:\n"
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"- MODEL_URL (direct download URL), or\n"
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"- MODEL_REPO_ID (Hugging Face model repo id) and optional MODEL_FILENAME.\n"
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"\n"
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"Debug (env vars detected): "
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f"MODEL_URL={'set' if _get_env('MODEL_URL') else 'missing'}, "
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f"MODEL_REPO_ID={'set' if _get_env('MODEL_REPO_ID') else 'missing'}, "
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f"MODEL_FILENAME={'set' if _get_env('MODEL_FILENAME') else 'missing'}\n"
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)
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try:
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from huggingface_hub import hf_hub_download
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except Exception as e:
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raise RuntimeError(
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"Missing dependency 'huggingface_hub'. Add it to requirements.txt.\n"
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f"Import error: {e}"
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) from e
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token = _get_env("HF_TOKEN") or _get_env("HUGGINGFACE_TOKEN")
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downloaded_path = hf_hub_download(
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repo_id=model_repo_id,
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filename=model_filename,
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token=token,
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)
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model_path.parent.mkdir(parents=True, exist_ok=True)
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shutil.copyfile(downloaded_path, model_path)
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if not model_path.exists():
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raise FileNotFoundError(
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f"Model download did not produce file at: {model_path}\n"
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"Check MODEL_URL or MODEL_REPO_ID/MODEL_FILENAME configuration."
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)
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# Build model and load weights
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model = FastMLP(input_dim=1024)
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import pathlib
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import numpy as np
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import torch
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import streamlit as st
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from torch import nn
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# Model Definition
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class FastMLP(nn.Module):
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def forward(self, x):
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return self.layers(x)
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# Model Loader
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@st.cache_resource
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def load_model():
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]
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model_path = next((p for p in candidates if p.exists()), candidates[0])
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if not model_path.exists():
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raise FileNotFoundError(
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"Model file 'ampMLModel.pt' not found in any of:\n"
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f"- {repo_root / 'MLModels' / 'ampMLModel.pt'}\n"
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f"- {repo_root / 'models' / 'ampMLModel.pt'}\n"
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f"- {streamlitapp_dir / 'models' / 'ampMLModel.pt'}\n"
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)
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# Build model and load weights
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model = FastMLP(input_dim=1024)
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requirements.txt
CHANGED
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@@ -5,5 +5,4 @@ torch
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scikit-learn
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matplotlib
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plotly
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requests
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huggingface_hub
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scikit-learn
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matplotlib
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plotly
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requests
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