root commited on
Commit ·
0d2448c
1
Parent(s): ae51aec
Feature: Integrate google/MedASR for speech to text prompting for MedGemma
Browse files- Dockerfile +1 -0
- app/main.py +23 -0
- frontend/dashboard.py +23 -0
- requirements.txt +5 -1
Dockerfile
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@@ -6,6 +6,7 @@ RUN apt-get update && apt-get install -y --no-install-recommends \
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curl \
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gcc \
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musl \
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&& rm -rf /var/lib/apt/lists/*
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# 2. CREATE THE BRIDGE (The critical step)
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curl \
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gcc \
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musl \
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libsndfile1
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&& rm -rf /var/lib/apt/lists/*
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# 2. CREATE THE BRIDGE (The critical step)
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app/main.py
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@@ -2,6 +2,7 @@ from fastapi import FastAPI, HTTPException
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from contextlib import asynccontextmanager
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from app.schemas import ClinicalNoteRequest, DiagnosisResponse
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from app.model import predictor
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import os
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# 1. Define the lifespan (startup/shutdown logic)
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@@ -22,6 +23,9 @@ async def lifespan(app: FastAPI):
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# --- SHUTDOWN ---
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print("🛑 Cleaning up...")
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# 2. Create the 'app' object
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app = FastAPI(lifespan=lifespan, title="Med-Gemma Impact API")
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@@ -37,6 +41,25 @@ def check_emergency(notes: str, symptoms: list) -> bool:
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return True
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return False
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# ---------------------------------
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# 3. Define the endpoints
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@app.get("/")
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from contextlib import asynccontextmanager
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from app.schemas import ClinicalNoteRequest, DiagnosisResponse
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from app.model import predictor
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from transformers import pipeline
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import os
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# 1. Define the lifespan (startup/shutdown logic)
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# --- SHUTDOWN ---
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print("🛑 Cleaning up...")
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# 2. Create the 'app' object
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app = FastAPI(lifespan=lifespan, title="Med-Gemma Impact API")
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return True
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return False
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# ---------------------------------
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# Initialize the MedASR pipeline (Ears)
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# We use the CPU version of torch specifically
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med_asr_pipe = pipeline(
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"automatic-speech-recognition",
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model="google/medasr",
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device="cpu"
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)
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@app.post("/transcribe")
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async def transcribe_audio(file: UploadFile = File(...)):
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# Save temporary audio file
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with open("temp_audio.wav", "wb") as f:
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f.write(await file.read())
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# Transcribe using MedASR
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result = med_asr_pipe("temp_audio.wav")
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return {"transcription": result["text"]}
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# 3. Define the endpoints
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@app.get("/")
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frontend/dashboard.py
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@@ -1,4 +1,5 @@
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import streamlit as st
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import requests
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import json
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import os
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@@ -10,6 +11,28 @@ st.set_page_config(page_title="Med-Gemma Triage", page_icon="🏥")
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# 2. The UI Layout
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st.title("🏥 Med-Gemma: Clinical Triage Assistant")
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st.markdown("---")
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col1, col2 = st.columns(2)
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import streamlit as st
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from streamlit_mic_recorder import mic_recorder
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import requests
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import json
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import os
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# 2. The UI Layout
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st.title("🏥 Med-Gemma: Clinical Triage Assistant")
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# Add a voice recording section
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st.subheader("Dictate Symptoms")
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audio = mic_recorder(
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start_prompt="⏺️ Start Dictation",
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stop_prompt="⏹️ Stop",
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key='recorder'
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)
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# Process the audio if recorded
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if audio:
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with st.spinner("Transcribing medical dictation..."):
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# Send audio bytes to our new /transcribe endpoint
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files = {'file': audio['bytes']}
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response = requests.post(f"{st.secrets['API_URL']}/transcribe", files=files)
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if response.status_code == 200:
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transcription = response.json().get("transcription")
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# Fill the symptoms box with the transcription
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st.session_state.symptoms = transcription
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st.success("Transcription complete!")
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st.markdown("---")
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col1, col2 = st.columns(2)
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requirements.txt
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@@ -2,4 +2,8 @@ fastapi
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uvicorn[standard]
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pydantic
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huggingface_hub
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llama-cpp-python
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uvicorn[standard]
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pydantic
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huggingface_hub
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llama-cpp-python
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transformers
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torch --index-url https://download.pytorch.org/whl/cpu
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librosa
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streamlit-mic-recorder
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