maom commited on
Commit
e3c2f3a
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1 Parent(s): 59aa10a

Update app.py

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Files changed (1) hide show
  1. app.py +3 -1
app.py CHANGED
@@ -123,7 +123,7 @@ descriptions = []
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  for gene_id in gene_ids:
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  try:
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- locus_tag_old = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["locus_tag_new"].values[0]
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  gene_name = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["gene_name"].values[0]
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  sacch_ortholog = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["sacch_ortholog"].values[0]
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  description = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["description"].values[0]
@@ -141,6 +141,8 @@ for gene_id in gene_ids:
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  print(f"""
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  Constructing node_info
 
 
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  gene_index: {len(gene_ids)},
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  locus_tag_old: {len(old_locus_tags)},
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  gene_types: {len(gene_types)},
 
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  for gene_id in gene_ids:
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  try:
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+ locus_tag_old = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["locus_tag_old"].values[0]
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  gene_name = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["gene_name"].values[0]
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  sacch_ortholog = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["sacch_ortholog"].values[0]
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  description = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["description"].values[0]
 
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  print(f"""
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  Constructing node_info
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+ seed_gene_ids: {len(seed_gene_ids)},
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+ neighbor_gene_ids: {len(neighbor_gene_ids)},
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  gene_index: {len(gene_ids)},
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  locus_tag_old: {len(old_locus_tags)},
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  gene_types: {len(gene_types)},