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Update app.py
Browse files
app.py
CHANGED
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@@ -123,7 +123,7 @@ descriptions = []
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for gene_id in gene_ids:
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try:
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locus_tag_old = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["
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gene_name = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["gene_name"].values[0]
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sacch_ortholog = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["sacch_ortholog"].values[0]
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description = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["description"].values[0]
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@@ -141,6 +141,8 @@ for gene_id in gene_ids:
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print(f"""
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Constructing node_info
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gene_index: {len(gene_ids)},
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locus_tag_old: {len(old_locus_tags)},
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gene_types: {len(gene_types)},
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for gene_id in gene_ids:
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try:
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locus_tag_old = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["locus_tag_old"].values[0]
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gene_name = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["gene_name"].values[0]
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sacch_ortholog = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["sacch_ortholog"].values[0]
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description = gene_metadata.loc[gene_metadata["locus_tag_old"] == gene_id]["description"].values[0]
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print(f"""
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Constructing node_info
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seed_gene_ids: {len(seed_gene_ids)},
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neighbor_gene_ids: {len(neighbor_gene_ids)},
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gene_index: {len(gene_ids)},
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locus_tag_old: {len(old_locus_tags)},
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gene_types: {len(gene_types)},
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