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app.py
CHANGED
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@@ -71,7 +71,7 @@ chart_data = pd.DataFrame({
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"expression_1": np.log10(estimated_expression.loc[h99_transcript_annotations["gene_id"] == gene_id_1].to_numpy()[0] + 1),
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"expression_2": np.log10(estimated_expression.loc[h99_transcript_annotations["gene_id"] == gene_id_2].to_numpy()[0] + 1),
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"run_accession": estimated_expression.columns})
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chart_data.merge(
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right = estimated_expression_meta,
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on = "run_accession")
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@@ -81,7 +81,6 @@ chart = (
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.encode(
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x="expression_1",
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y="expression_2",
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size=5,
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color="study_accession",
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tooltip=["run_accession", "study_accession"]))
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"expression_1": np.log10(estimated_expression.loc[h99_transcript_annotations["gene_id"] == gene_id_1].to_numpy()[0] + 1),
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"expression_2": np.log10(estimated_expression.loc[h99_transcript_annotations["gene_id"] == gene_id_2].to_numpy()[0] + 1),
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"run_accession": estimated_expression.columns})
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+
chart_data = chart_data.merge(
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right = estimated_expression_meta,
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on = "run_accession")
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.encode(
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x="expression_1",
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y="expression_2",
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color="study_accession",
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tooltip=["run_accession", "study_accession"]))
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