fix gene_product <= gene_name

app.py

@@ -117,22 +117,22 @@ gene_ids = seed_gene_ids + neighbor_gene_ids
 gene_types = ['seed'] * len(seed_gene_ids) + ['neighbor'] * len(neighbor_gene_ids)
 
 cnag_ids = []
-gene_names = []
+gene_products = []
 descriptions = []
     
 for gene_id in gene_ids:
     try:
         cnag_id = h99_transcript_annotations.loc[h99_transcript_annotations["gene_id"] == gene_id]["cnag_id"].values[0]
-        gene_name = h99_transcript_annotations.loc[h99_transcript_annotations["gene_id"] == gene_id]["gene_name"].values[0]
+        gene_product = h99_transcript_annotations.loc[h99_transcript_annotations["gene_id"] == gene_id]["gene_product"].values[0]
         description = h99_transcript_annotations.loc[h99_transcript_annotations["gene_id"] == gene_id]["description"].values[0]
     except:
-        st.error(f"Unable to locate cnag_id for Gene ID: '{gene_id}', it should be of the form 'cnag_######'")
+        st.error(f"Unable to locate cnag_id for Gene ID: '{gene_id}', it should be of the form 'cnag_#####'")
         cnag_id = None
-        gene_name = None
+        gene_product = None
         description = None
 
     cnag_ids.append(cnag_id)
-    gene_names.append(gene_name)
+    gene_products.append(gene_product)
     descriptions.append(description)
 
 node_info = pd.DataFrame({
@@ -140,7 +140,7 @@ node_info = pd.DataFrame({
     "gene_id" : gene_ids,
     "gene_type" : gene_types,
     "cnag_id": cnag_ids,
-    "gene_name": gene_names,
+    "gene_product": gene_products,
     "description": description})
 
 neighbors = neighbors.merge(
@@ -197,7 +197,7 @@ for i in range(len(node_info.index)):
     elements.append({
         "data": {
             "id": node["gene_id"],
-            "label": node["gene_name"] if node["gene_name"] is not None else node["gene_id"],
+            "label": node["gene_product"] if node["gene_product"] is not None else node["gene_id"],
             "color": node_color_lut[node["gene_type"]]},
         "position": {
             "x" : layout_x,