Spaces:
Sleeping
Sleeping
Commit ·
57d180b
1
Parent(s): ddfde87
Updated frontend and cleaned imports
Browse files- nhs_logo.png +0 -0
- src/__pycache__/config.cpython-312.pyc +0 -0
- src/__pycache__/query_rag.cpython-312.pyc +0 -0
- src/__pycache__/search_engine.cpython-312.pyc +0 -0
- src/config.py +0 -2
- src/query_rag.py +0 -2
- src/search_engine.py +2 -5
- src/streamlit_app.py +208 -50
nhs_logo.png
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src/__pycache__/config.cpython-312.pyc
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Binary file (1.91 kB). View file
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src/__pycache__/query_rag.cpython-312.pyc
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Binary file (15 kB). View file
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src/__pycache__/search_engine.cpython-312.pyc
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Binary file (2.44 kB). View file
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src/config.py
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@@ -1,6 +1,4 @@
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import os
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from enum import Enum
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from typing import Dict, NamedTuple
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from dataclasses import dataclass
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class InfoSource(Enum):
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from enum import Enum
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from dataclasses import dataclass
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class InfoSource(Enum):
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src/query_rag.py
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@@ -1,8 +1,6 @@
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import os
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import time
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import argparse
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import logging
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import re
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from typing import Dict, List, Optional, Generator, Tuple
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from openai import OpenAI
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from config import Config, InfoSource
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import os
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import argparse
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import logging
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from typing import Dict, List, Optional, Generator, Tuple
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from openai import OpenAI
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from config import Config, InfoSource
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src/search_engine.py
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@@ -1,8 +1,5 @@
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import numpy as np
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import pandas as pd
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import voyageai
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from typing import List
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from collections import defaultdict
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import logging
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import os
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from pinecone import Pinecone
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@@ -18,7 +15,7 @@ class SearchEngine:
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self.pc = Pinecone(api_key=pinecone_api_key)
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self.index = self.pc.Index("nhs-conditions")
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def similarity_search(self, query_text: str, namespace: str, top_k: int =
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"""Perform similarity search using Pinecone"""
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try:
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# Embed the query using the same model - matches your example exactly
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import voyageai
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from typing import List
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import logging
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import os
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from pinecone import Pinecone
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self.pc = Pinecone(api_key=pinecone_api_key)
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self.index = self.pc.Index("nhs-conditions")
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def similarity_search(self, query_text: str, namespace: str, top_k: int = 5) -> List[dict]:
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"""Perform similarity search using Pinecone"""
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try:
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# Embed the query using the same model - matches your example exactly
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src/streamlit_app.py
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@@ -1,5 +1,7 @@
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import streamlit as st
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from typing import Dict, List
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try:
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from query_rag import RAGSystem
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st.stop()
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# ---
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st.set_page_config(page_title="NHS Clinical Assistant", layout="wide")
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# Initialize RAG System
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def get_rag_system():
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@@ -43,13 +60,11 @@ def display_sources(sources_data: List[Dict]):
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clean_section = metadata.get('clean_section', 'Unknown Section')
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url = metadata.get('url', '')
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source_text = f"
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st.markdown(source_text)
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-
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if url:
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-
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-
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st.markdown(
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def initialize_session_state():
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@@ -77,25 +92,132 @@ initialize_session_state()
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# --- STYLING ---
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st.markdown("""
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<style>
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-
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</style>
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""", unsafe_allow_html=True)
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# --- MAIN APPLICATION AREA ---
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-
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st.
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def submit_and_process_query(query_to_send: str, display_query_text: str):
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st.session_state.processing_query = True
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@@ -154,7 +313,7 @@ def submit_and_process_query(query_to_send: str, display_query_text: str):
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sources_data = chunk_sources_data
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temp_response_placeholder.markdown(
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f"<div
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unsafe_allow_html=True
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)
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@@ -177,43 +336,40 @@ def submit_and_process_query(query_to_send: str, display_query_text: str):
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# Display chat history
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for i, chat_entry in enumerate(st.session_state.chat_history):
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-
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response_info = f"(LLM: {chat_entry.get('llm_model', 'N/A')})"
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st.markdown(f"
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st.markdown(
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f"<div style='border-left: 4px solid #4CAF50; padding-left: 10px; margin-bottom: 10px;'>{chat_entry['response']}</div>",
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unsafe_allow_html=True
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-
)
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st.
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with st.expander("View Sources", expanded=False):
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sources_data = chat_entry.get("sources_data", [])
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if sources_data:
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display_sources(sources_data)
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else:
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st.markdown("No sources available for this response.")
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st.markdown("
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# Suggested queries
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st.markdown("<
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suggested_queries_list = [
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"What are the symptoms of ADHD in adults?",
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"How is type 2 diabetes diagnosed?",
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"What are the treatment options for depression?"
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]
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sq_cols = st.columns(len(suggested_queries_list))
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for idx, sq_text_item in enumerate(suggested_queries_list):
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-
if sq_cols[idx].button(
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sq_text_item,
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key=f"suggested_{idx}",
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disabled=st.session_state.processing_query
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):
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st.session_state.processing_query = True
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st.session_state.query_to_run_next = sq_text_item
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st.rerun()
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# User input section
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user_query = st.chat_input(
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@@ -233,6 +389,8 @@ if st.session_state.get("query_to_run_next"):
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st.session_state.query_to_run_next = None # Clear it so it doesn't run again
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submit_and_process_query(query_to_process, query_to_process)
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# --- Footer with Licensing Information ---
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st.markdown("---")
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st.caption("""
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import streamlit as st
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from typing import Dict, List
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from pathlib import Path
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import os
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try:
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from query_rag import RAGSystem
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st.stop()
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# --- assets / logo setup ---
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# Get the correct path to the logo file
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current_dir = Path(__file__).parent
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LOGO_PATH = current_dir.parent / "nhs_logo.png"
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# Check if logo exists, if not use a fallback
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if LOGO_PATH.exists():
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logo_path_str = str(LOGO_PATH)
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else:
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# Fallback if logo doesn't exist
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logo_path_str = None
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LOGO_ALT = "NHS logo"
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# set a page icon (use emoji as fallback if logo file doesn't exist)
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page_icon = "🩺" # Use emoji instead of file path for better compatibility
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st.set_page_config(page_title="NHS Clinical Assistant", layout="wide", page_icon=page_icon)
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# Initialize RAG System
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def get_rag_system():
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clean_section = metadata.get('clean_section', 'Unknown Section')
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url = metadata.get('url', '')
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source_text = f"<div class='source-item'><div class='source-title'>Source {idx+1}: {clean_section}</div>"
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if url:
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source_text += f"<div class='source-link'>🔗 <a href='{url}' target='_blank'>View online</a></div>"
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source_text += "</div>"
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st.markdown(source_text, unsafe_allow_html=True)
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def initialize_session_state():
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# --- STYLING ---
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st.markdown("""
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<style>
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/* Import a modern font */
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@import url('https://fonts.googleapis.com/css2?family=Inter:wght@300;400;600;700&display=swap');
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+
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:root{
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--bg:#f6f8fa;
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--card:#ffffff;
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--accent:#1f7a8c; /* deep teal */
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--accent-2:#2b6777;
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--muted:#6b7280;
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--green:#16a34a;
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}
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+
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html, body, [class*="css"] {
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font-family: 'Inter', system-ui, -apple-system, "Segoe UI", Roboto, "Helvetica Neue", Arial;
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+
color: #0f1724;
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background: linear-gradient(180deg, var(--bg) 0%, #ffffff 100%);
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}
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+
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/* Main container */
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.main .block-container {
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padding-top: 8px;
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padding-left: 28px;
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padding-right: 28px;
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max-width: 1200px;
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margin: 0 auto;
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}
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+
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/* Header */
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.app-header{
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display:flex;
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align-items:center;
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justify-content:space-between;
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+
gap:12px;
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margin-bottom:12px;
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}
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.app-title {
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display:flex;
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+
align-items:center;
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+
gap:12px;
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}
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.logo {
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background: linear-gradient(135deg, var(--accent), var(--accent-2));
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color: white;
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width:44px;
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height:44px;
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+
display:flex;
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align-items:center;
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justify-content:center;
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+
font-weight:700;
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+
border-radius:10px;
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box-shadow: 0 6px 18px rgba(43,103,119,0.12);
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}
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.title-text { font-size:20px; font-weight:700; letter-spacing: -0.2px; }
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+
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+
/* Card-like chat area */
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+
.chat-card {
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background: var(--card);
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| 152 |
+
border-radius: 12px;
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padding: 18px;
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+
box-shadow: 0 6px 20px rgba(20,23,30,0.04);
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}
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+
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+
/* Chat bubbles */
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.chat-bubble {
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max-width:78%;
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padding:12px 14px;
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border-radius:12px;
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margin-bottom:10px;
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+
line-height:1.4;
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box-shadow: 0 4px 12px rgba(15,23,36,0.04);
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}
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.chat-bubble.user {
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background: linear-gradient(90deg, rgba(255,255,255,1), rgba(255,255,255,1));
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| 168 |
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border: 1px solid rgba(16,24,40,0.06);
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| 169 |
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margin-left:auto;
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| 170 |
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border-bottom-right-radius:6px;
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}
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.chat-bubble.assistant {
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background: linear-gradient(180deg, rgba(31,122,140,0.06), rgba(43,103,119,0.03));
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| 174 |
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border-left: 4px solid var(--accent);
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border-bottom-left-radius:6px;
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margin-right:auto;
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}
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+
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.chat-meta {
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font-size:12px;
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color:var(--muted);
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margin-bottom:6px;
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}
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/* Sources */
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.source-item { padding:10px 12px; border-radius:8px; background:#fbfcfd; margin-bottom:8px; border:1px solid rgba(16,24,40,0.03); }
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.source-title { font-weight:600; color:var(--accent-2); margin-bottom:4px; }
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| 188 |
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.source-link a { color:var(--accent); text-decoration:none; font-weight:600; }
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| 189 |
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.source-link a:hover { text-decoration:underline; }
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+
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| 191 |
+
/* Buttons / chips */
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| 192 |
+
.stButton>button {
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border-radius:999px !important;
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| 194 |
+
padding:8px 14px !important;
|
| 195 |
+
background: linear-gradient(90deg, #ffffff, #f7fafb) !important;
|
| 196 |
+
border: 1px solid rgba(16,24,40,0.06) !important;
|
| 197 |
+
color: #0f1724 !important;
|
| 198 |
+
box-shadow: 0 4px 10px rgba(12,18,28,0.04);
|
| 199 |
+
}
|
| 200 |
+
.stButton>button:active { transform: translateY(1px); }
|
| 201 |
+
|
| 202 |
+
/* Suggested chips */
|
| 203 |
+
.suggested-chips { display:flex; gap:8px; flex-wrap:wrap; margin-bottom:12px; }
|
| 204 |
+
.chip {
|
| 205 |
+
display:inline-flex;
|
| 206 |
+
gap:8px;
|
| 207 |
+
align-items:center;
|
| 208 |
+
padding:8px 12px;
|
| 209 |
+
border-radius:999px;
|
| 210 |
+
background: rgba(47,128,237,0.06);
|
| 211 |
+
color: #164e63;
|
| 212 |
+
border:1px solid rgba(47,128,237,0.12);
|
| 213 |
+
cursor:pointer;
|
| 214 |
+
font-weight:600;
|
| 215 |
+
font-size:13px;
|
| 216 |
+
}
|
| 217 |
+
|
| 218 |
+
/* small helpers */
|
| 219 |
+
.muted { color:var(--muted); font-size:13px; }
|
| 220 |
+
hr.stDivider { border: none; height:1px; background: linear-gradient(90deg, transparent, rgba(15,23,36,0.06), transparent); margin: 16px 0; }
|
| 221 |
</style>
|
| 222 |
""", unsafe_allow_html=True)
|
| 223 |
|
|
|
|
| 254 |
|
| 255 |
|
| 256 |
# --- MAIN APPLICATION AREA ---
|
| 257 |
+
# Header area with logo, title and small info
|
| 258 |
+
header_cols = st.columns([0.12, 0.76, 0.12])
|
| 259 |
+
with header_cols[0]:
|
| 260 |
+
if logo_path_str and os.path.exists(logo_path_str):
|
| 261 |
+
# Use HTML to control sizing while preserving quality
|
| 262 |
+
import base64
|
| 263 |
+
with open(logo_path_str, "rb") as img_file:
|
| 264 |
+
img_base64 = base64.b64encode(img_file.read()).decode()
|
| 265 |
+
|
| 266 |
+
st.markdown(f"""
|
| 267 |
+
<div style="display: flex; justify-content: center; align-items: center;">
|
| 268 |
+
<img src="data:image/png;base64,{img_base64}"
|
| 269 |
+
style="max-width: 100%; height: auto; max-height: 60px; object-fit: contain;"
|
| 270 |
+
alt="NHS Logo">
|
| 271 |
+
</div>
|
| 272 |
+
""", unsafe_allow_html=True)
|
| 273 |
+
else:
|
| 274 |
+
# Fallback: display emoji or text if logo not found
|
| 275 |
+
st.markdown('<div style="font-size:56px;">🩺</div>', unsafe_allow_html=True)
|
| 276 |
+
|
| 277 |
+
|
| 278 |
+
|
| 279 |
+
with header_cols[1]:
|
| 280 |
+
st.markdown("""
|
| 281 |
+
<div style="display:flex; flex-direction:column; justify-content:center;">
|
| 282 |
+
<div class="title-text">NHS Clinical Assistant</div>
|
| 283 |
+
<div class="muted">Trusted NHS content · Evidence-backed summaries</div>
|
| 284 |
+
</div>
|
| 285 |
+
""", unsafe_allow_html=True)
|
| 286 |
+
|
| 287 |
+
with header_cols[2]:
|
| 288 |
+
st.markdown(f"""
|
| 289 |
+
<div style="display:flex; gap:12px; align-items:center; justify-content:flex-end;">
|
| 290 |
+
<div style="font-size:13px; color:var(--muted);">Model:</div>
|
| 291 |
+
<div style="font-weight:700; color:var(--accent-2);">{st.session_state.llm_model}</div>
|
| 292 |
+
</div>
|
| 293 |
+
""", unsafe_allow_html=True)
|
| 294 |
+
|
| 295 |
+
st.markdown('<div class="chat-card">', unsafe_allow_html=True)
|
| 296 |
|
| 297 |
def submit_and_process_query(query_to_send: str, display_query_text: str):
|
| 298 |
st.session_state.processing_query = True
|
|
|
|
| 313 |
sources_data = chunk_sources_data
|
| 314 |
|
| 315 |
temp_response_placeholder.markdown(
|
| 316 |
+
f"<div class='chat-bubble assistant'>{''.join(response_chunks)}</div>",
|
| 317 |
unsafe_allow_html=True
|
| 318 |
)
|
| 319 |
|
|
|
|
| 336 |
|
| 337 |
# Display chat history
|
| 338 |
for i, chat_entry in enumerate(st.session_state.chat_history):
|
| 339 |
+
# user
|
| 340 |
+
st.markdown(f"<div class='chat-bubble user'><div class='chat-meta'>You</div><div>{chat_entry['display_query']}</div></div>", unsafe_allow_html=True)
|
| 341 |
|
| 342 |
response_info = f"(LLM: {chat_entry.get('llm_model', 'N/A')})"
|
| 343 |
|
| 344 |
+
st.markdown(f"<div class='chat-bubble assistant'><div class='chat-meta'>Assistant {response_info}</div><div>{chat_entry['response']}</div></div>", unsafe_allow_html=True)
|
|
|
|
|
|
|
|
|
|
|
|
|
| 345 |
|
| 346 |
+
st.markdown("<div style='margin-top:8px; font-weight:600;'>📚 Sources</div>", unsafe_allow_html=True)
|
| 347 |
with st.expander("View Sources", expanded=False):
|
| 348 |
sources_data = chat_entry.get("sources_data", [])
|
| 349 |
if sources_data:
|
| 350 |
display_sources(sources_data)
|
| 351 |
else:
|
| 352 |
st.markdown("No sources available for this response.")
|
| 353 |
+
st.markdown('<hr class="stDivider">', unsafe_allow_html=True)
|
| 354 |
|
| 355 |
+
# Suggested queries - styled as chips
|
| 356 |
+
st.markdown("<div style='margin-top:6px; margin-bottom:8px; font-weight:600;'>💡 Suggested Queries</div>", unsafe_allow_html=True)
|
| 357 |
suggested_queries_list = [
|
| 358 |
"What are the symptoms of ADHD in adults?",
|
| 359 |
"How is type 2 diabetes diagnosed?",
|
| 360 |
"What are the treatment options for depression?"
|
| 361 |
]
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 362 |
|
| 363 |
+
# Render chips in a row. Use buttons beneath for accessibility & state handling.
|
| 364 |
+
chip_cols = st.columns([1,1,1])
|
| 365 |
+
for idx, sq in enumerate(suggested_queries_list):
|
| 366 |
+
with chip_cols[idx]:
|
| 367 |
+
if st.button(sq, key=f"suggested_{idx}", disabled=st.session_state.processing_query):
|
| 368 |
+
st.session_state.processing_query = True
|
| 369 |
+
st.session_state.query_to_run_next = sq
|
| 370 |
+
st.rerun()
|
| 371 |
+
|
| 372 |
+
st.markdown('<div style="height:8px"></div>', unsafe_allow_html=True)
|
| 373 |
|
| 374 |
# User input section
|
| 375 |
user_query = st.chat_input(
|
|
|
|
| 389 |
st.session_state.query_to_run_next = None # Clear it so it doesn't run again
|
| 390 |
submit_and_process_query(query_to_process, query_to_process)
|
| 391 |
|
| 392 |
+
st.markdown('</div>', unsafe_allow_html=True)
|
| 393 |
+
|
| 394 |
# --- Footer with Licensing Information ---
|
| 395 |
st.markdown("---")
|
| 396 |
st.caption("""
|