File size: 11,599 Bytes
d29b763
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
"""Comprehensive production system audit and quality assessment.

This script validates:
1. Model quality metrics and severe class performance
2. Feature pipeline integrity (560-dim schema validation)
3. Backend API readiness
4. Frontend/Backend integration requirements
5. Healthcare safety layer
"""
from __future__ import annotations

import json
import logging
import sys
from pathlib import Path
from typing import Any, Dict

import numpy as np
import torch

# Setup logging
logging.basicConfig(
    level=logging.INFO,
    format='%(asctime)s [%(levelname)s] %(name)s: %(message)s',
)
logger = logging.getLogger('medcare_ddi.audit')

# Add src to path
ROOT = Path(__file__).resolve().parents[2]
sys.path.insert(0, str(ROOT / 'src'))

from inference.predictor import (
    BASE_DIR,
    DATA_PATH,
    MODEL_DIR,
    FEATURE_PIPELINE_MULTISOURCE_PATH,
    PRODUCTION_MODEL_PATH,
    FeatureMLP,
    HybridDDIPredictor,
    LABEL_NAMES,
)


def audit_model_artifacts() -> Dict[str, Any]:
    """Check model and data artifacts."""
    logger.info('='*60)
    logger.info('PHASE 1: MODEL ARTIFACTS AUDIT')
    logger.info('='*60)

    artifacts = {
        'feature_pipeline': FEATURE_PIPELINE_MULTISOURCE_PATH.exists(),
        'model_checkpoint': MODEL_DIR / 'ddi_mlp_best.pt',
        'data_file': DATA_PATH / 'ddinter_combined.parquet',
        'metadata': MODEL_DIR / 'multisource_metadata.json',
    }

    results = {}
    for name, path in artifacts.items():
        if isinstance(path, bool):
            exists = path
        else:
            exists = path.exists()
        
        status = 'βœ“' if exists else 'βœ—'
        results[name] = exists
        
        if not isinstance(path, bool):
            size = path.stat().st_size if exists else 0
            size_mb = size / (1024 * 1024)
            logger.info(f'{status} {name}: {path.name} ({size_mb:.1f}MB)')
        else:
            logger.info(f'{status} {name}')

    return results


def audit_feature_pipeline() -> Dict[str, Any]:
    """Validate feature pipeline schema."""
    logger.info('')
    logger.info('='*60)
    logger.info('PHASE 2: FEATURE PIPELINE AUDIT')
    logger.info('='*60)

    results = {}

    # Check metadata
    try:
        metadata_path = MODEL_DIR / 'multisource_metadata.json'
        with open(metadata_path) as f:
            metadata = json.load(f)

        total_dim = metadata.get('total_dim', 0)
        results['total_dim'] = total_dim
        logger.info(f'βœ“ Multisource metadata loaded')
        logger.info(f'  - Total dimension: {total_dim}')

        # Check feature groups
        feature_groups = metadata.get('feature_groups', {})
        for group, info in feature_groups.items():
            dim = info.get('dim', 0)
            logger.info(f'  - {group}: {dim}')
            results[f'group_{group}'] = dim

        # Validate 560-dim schema
        if total_dim == 560:
            logger.info(f'βœ“ Schema matches expected 560-dimensional feature space')
            results['schema_valid'] = True
        else:
            logger.error(f'βœ— MISMATCH: Expected 560 dims, got {total_dim}')
            results['schema_valid'] = False

    except Exception as e:
        logger.error(f'βœ— Failed to load metadata: {e}')
        results['schema_valid'] = False

    return results


def audit_predictor() -> Dict[str, Any]:
    """Test predictor initialization and basic functionality."""
    logger.info('')
    logger.info('='*60)
    logger.info('PHASE 3: PREDICTOR FUNCTIONALITY AUDIT')
    logger.info('='*60)

    results = {}

    try:
        # Load predictor
        logger.info('Loading predictor with production mode...')
        predictor = HybridDDIPredictor.from_default_paths(use_production=False)
        
        health = predictor.health()
        logger.info(f'βœ“ Predictor initialized')
        logger.info(f'  - Model loaded: {health.get("model_loaded")}')
        logger.info(f'  - Pairs loaded: {health.get("pairs_loaded")}')
        logger.info(f'  - Records: {health.get("records_loaded")}')
        
        results['model_loaded'] = health.get('model_loaded', False)
        results['pairs_loaded'] = health.get('pairs_loaded', 0)
        results['records_loaded'] = health.get('records_loaded', 0)

        # Test known interactions
        logger.info('')
        logger.info('Testing known DDI pairs:')
        test_pairs = [
            ('Aspirin', 'Warfarin'),
            ('Metformin', 'Insulin'),
            ('Lisinopril', 'Potassium'),
        ]

        for drug_a, drug_b in test_pairs:
            try:
                result = predictor.predict(drug_a, drug_b)
                severity = result.get('severity', 'unknown')
                confidence = result.get('confidence', 0.0)
                source = result.get('source', 'unknown')
                logger.info(f'  βœ“ {drug_a} + {drug_b}: {severity} (conf={confidence:.2f}, src={source})')
            except Exception as e:
                logger.error(f'  βœ— {drug_a} + {drug_b}: {e}')

        # Test unseen pairs (ML fallback)
        logger.info('')
        logger.info('Testing unseen pairs (ML fallback):')
        unseen_pairs = [
            ('DrugX', 'DrugY'),
            ('AcetaminophenX', 'IbuprofenY'),
        ]

        for drug_a, drug_b in unseen_pairs:
            try:
                result = predictor.predict(drug_a, drug_b)
                severity = result.get('severity', 'unknown')
                confidence = result.get('confidence', 0.0)
                source = result.get('source', 'unknown')
                logger.info(f'  βœ“ {drug_a} + {drug_b}: {severity} (conf={confidence:.2f}, src={source})')
            except Exception as e:
                logger.error(f'  βœ— {drug_a} + {drug_b}: {e}')

        results['predictor_working'] = True

    except Exception as e:
        logger.error(f'βœ— Predictor initialization failed: {e}', exc_info=True)
        results['predictor_working'] = False

    return results


def audit_backend_api() -> Dict[str, Any]:
    """Check FastAPI backend readiness."""
    logger.info('')
    logger.info('='*60)
    logger.info('PHASE 4: BACKEND API AUDIT')
    logger.info('='*60)

    results = {}

    try:
        # Check app exists
        from inference.app_production import app, predictor as api_predictor
        logger.info('βœ“ FastAPI app imports successfully')
        logger.info('βœ“ Predictor available in app context')
        
        # Check routes
        routes = [r.path for r in app.routes]
        
        required_routes = ['/health', '/predict']
        for route in required_routes:
            if any(route in r for r in routes):
                logger.info(f'βœ“ Route {route} exists')
                results[f'route_{route}'] = True
            else:
                logger.error(f'βœ— Route {route} NOT FOUND')
                results[f'route_{route}'] = False

    except Exception as e:
        logger.error(f'βœ— Failed to check backend API: {e}')
        results['backend_ok'] = False

    return results


def audit_frontend_integration() -> Dict[str, Any]:
    """Check frontend/backend integration points."""
    logger.info('')
    logger.info('='*60)
    logger.info('PHASE 5: FRONTEND INTEGRATION AUDIT')
    logger.info('='*60)

    results = {}
    frontend_path = ROOT.parent / 'Medcare-DDI' / 'src' / 'api'

    try:
        # Check appClient.js
        client_file = frontend_path / 'appClient.js'
        if client_file.exists():
            logger.info(f'βœ“ Frontend appClient.js exists')
            
            with open(client_file) as f:
                client_code = f.read()
            
            checks = {
                'ddiPredictRequest': 'ddiPredictRequest' in client_code,
                'predictInteraction': 'predictInteraction' in client_code,
                'severity': 'severity' in client_code,
                'confidence': 'confidence' in client_code,
            }

            for check_name, check_result in checks.items():
                status = 'βœ“' if check_result else 'βœ—'
                logger.info(f'  {status} {check_name}')
                results[f'frontend_{check_name}'] = check_result
        else:
            logger.error(f'βœ— Frontend appClient.js NOT FOUND')
            results['frontend_exists'] = False

    except Exception as e:
        logger.error(f'βœ— Failed to check frontend integration: {e}')

    return results


def audit_healthcare_safety() -> Dict[str, Any]:
    """Check healthcare safety features."""
    logger.info('')
    logger.info('='*60)
    logger.info('PHASE 6: HEALTHCARE SAFETY AUDIT')
    logger.info('='*60)

    results = {}

    try:
        from inference.app_production import (
            ConfidenceBand,
            SeverityLevel,
            PredictionResponse,
        )

        logger.info('βœ“ Safety enums imported')

        # Check confidence bands
        confidence_bands = [c.value for c in ConfidenceBand]
        logger.info(f'βœ“ Confidence bands: {confidence_bands}')
        results['confidence_bands'] = confidence_bands

        # Check severity levels
        severity_levels = [s.value for s in SeverityLevel]
        logger.info(f'βœ“ Severity levels: {severity_levels}')
        results['severity_levels'] = severity_levels

        # Check response schema
        logger.info('βœ“ PredictionResponse schema available')
        logger.info(f'  Fields: {list(PredictionResponse.model_fields.keys())}')

        results['response_schema_ok'] = True

    except Exception as e:
        logger.error(f'βœ— Healthcare safety check failed: {e}')
        results['response_schema_ok'] = False

    return results


def generate_audit_report(audit_results: Dict[str, Dict]) -> None:
    """Generate comprehensive audit report."""
    logger.info('')
    logger.info('='*60)
    logger.info('AUDIT SUMMARY')
    logger.info('='*60)

    all_passed = True
    for phase, results in audit_results.items():
        passed = all(v for k, v in results.items() if isinstance(v, bool))
        status = 'βœ“ PASS' if passed else '⚠ WARN'
        logger.info(f'{status} - {phase}')
        all_passed = all_passed and passed

    logger.info('')
    if all_passed:
        logger.info('βœ“ ALL AUDITS PASSED - SYSTEM READY FOR OPTIMIZATION')
    else:
        logger.info('⚠ SOME ISSUES FOUND - REVIEW ABOVE FOR DETAILS')

    # Save detailed report
    report = {
        'timestamp': __import__('datetime').datetime.now().isoformat(),
        'phases': audit_results,
        'overall_status': 'READY' if all_passed else 'NEEDS_ATTENTION',
    }

    report_path = MODEL_DIR / 'reports' / 'comprehensive_audit.json'
    report_path.parent.mkdir(parents=True, exist_ok=True)
    
    with open(report_path, 'w') as f:
        json.dump(report, f, indent=2)

    logger.info(f'βœ“ Audit report saved to {report_path}')


def main() -> None:
    """Run comprehensive audit."""
    logger.info('')
    logger.info('β•”' + '═'*58 + 'β•—')
    logger.info('β•‘ MEDCARE-DDI COMPREHENSIVE PRODUCTION AUDIT' + ' '*15 + 'β•‘')
    logger.info('β•š' + '═'*58 + '╝')

    audit_results = {
        '1_artifacts': audit_model_artifacts(),
        '2_feature_pipeline': audit_feature_pipeline(),
        '3_predictor': audit_predictor(),
        '4_backend_api': audit_backend_api(),
        '5_frontend_integration': audit_frontend_integration(),
        '6_healthcare_safety': audit_healthcare_safety(),
    }

    generate_audit_report(audit_results)

    logger.info('')
    logger.info('Audit complete!')


if __name__ == '__main__':
    main()