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d29b763 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 | """Simplified production system audit without complex imports."""
import json
import logging
import sys
from pathlib import Path
logging.basicConfig(
level=logging.INFO,
format='%(asctime)s [%(levelname)s] %(name)s: %(message)s',
)
logger = logging.getLogger('medcare_ddi.quick_audit')
BASE_DIR = Path(__file__).resolve().parents[2]
DATA_PATH = BASE_DIR / 'data' / 'processed' / 'ddinter_combined.parquet'
MODEL_DIR = BASE_DIR / 'models'
FEATURE_PIPELINE_MULTISOURCE_PATH = MODEL_DIR / 'feature_pipeline_multisource.pkl'
def audit_files():
"""Check that all critical files exist."""
logger.info('='*60)
logger.info('FILE EXISTENCE CHECK')
logger.info('='*60)
critical_files = {
'Feature Pipeline (11MB)': FEATURE_PIPELINE_MULTISOURCE_PATH,
'Model Checkpoint (318KB)': MODEL_DIR / 'ddi_mlp_best.pt',
'Data File (13MB)': DATA_PATH,
'Metadata': MODEL_DIR / 'multisource_metadata.json',
'Training Config': MODEL_DIR / 'training_config.json',
'FastAPI Backend': BASE_DIR / 'src' / 'inference' / 'app_production.py',
'Production Training': BASE_DIR / 'src' / 'training' / 'train_production_simple.py',
'Smoke Tests': BASE_DIR / 'src' / 'validation' / 'smoke_test.py',
}
all_good = True
for name, path in critical_files.items():
exists = path.exists()
status = 'β' if exists else 'β'
if path.suffix in ['.pkl', '.pt', '.csv']:
try:
size_mb = path.stat().st_size / (1024 * 1024)
logger.info(f'{status} {name}: {size_mb:.1f}MB')
except:
logger.info(f'{status} {name}')
else:
logger.info(f'{status} {name}')
all_good = all_good and exists
return all_good
def audit_metadata():
"""Check metadata schema."""
logger.info('')
logger.info('='*60)
logger.info('METADATA & SCHEMA CHECK')
logger.info('='*60)
try:
with open(MODEL_DIR / 'multisource_metadata.json') as f:
metadata = json.load(f)
# Check for both possible field names
total_dim = metadata.get('total_dim') or metadata.get('vector_dim', 0)
logger.info(f'β Multisource metadata loaded')
logger.info(f' - Total dimension: {total_dim}')
if total_dim != 560:
logger.error(f'β SCHEMA MISMATCH: Expected 560, got {total_dim}')
return False
# Check feature groups
feature_groups = metadata.get('feature_groups') or metadata.get('group_keep_counts', {})
if feature_groups:
for group, dim_or_count in feature_groups.items():
# Handle both dict and int values
dim = dim_or_count if isinstance(dim_or_count, int) else dim_or_count.get('dim', 0)
logger.info(f' - {group}: {dim}')
logger.info(f'β 560-dimensional schema confirmed')
return True
except Exception as e:
logger.error(f'β Metadata check failed: {e}')
return False
def audit_model_config():
"""Check training config."""
logger.info('')
logger.info('='*60)
logger.info('MODEL TRAINING CONFIG')
logger.info('='*60)
try:
with open(MODEL_DIR / 'training_config.json') as f:
config = json.load(f)
logger.info(f'β Training config loaded')
logger.info(f' - Loss type: {config.get("loss_type")}')
logger.info(f' - Sampler: {config.get("sampler")}')
logger.info(f' - Hidden dim: {config.get("hidden_dim")}')
logger.info(f' - Learning rate: {config.get("lr")}')
if config.get('loss_type') == 'focal' and config.get('sampler') == 'weighted':
logger.info(f'β Healthcare optimization features enabled')
return True
else:
logger.warning(f'β Some optimization features may not be enabled')
return True
except Exception as e:
logger.error(f'β Config check failed: {e}')
return False
def audit_summary_metrics():
"""Check metrics from previous training."""
logger.info('')
logger.info('='*60)
logger.info('PREVIOUS MODEL METRICS')
logger.info('='*60)
try:
with open(MODEL_DIR / 'ddi_mlp_best.summary.json') as f:
summary = json.load(f)
logger.info(f'β Model summary loaded')
logger.info(f' - Accuracy: {summary.get("best_validation_accuracy", 0):.2%}')
logger.info(f' - Dataset size: {summary.get("dataset_size", 0):,}')
logger.info(f' - Training epochs: {len(summary.get("training_history", []))}')
return True
except Exception as e:
logger.error(f'β Metrics check failed: {e}')
return False
def audit_code_structure():
"""Check that production code files exist and have content."""
logger.info('')
logger.info('='*60)
logger.info('PRODUCTION CODE STRUCTURE')
logger.info('='*60)
code_files = {
'FastAPI Backend': BASE_DIR / 'src' / 'inference' / 'app_production.py',
'Training Pipeline': BASE_DIR / 'src' / 'training' / 'train_production_simple.py',
'Smoke Tests': BASE_DIR / 'src' / 'validation' / 'smoke_test.py',
'Predictor': BASE_DIR / 'src' / 'inference' / 'predictor.py',
}
all_good = True
for name, path in code_files.items():
if not path.exists():
logger.error(f'β {name} missing')
all_good = False
continue
try:
with open(path) as f:
lines = len(f.readlines())
logger.info(f'β {name}: {lines} lines')
except Exception as e:
logger.error(f'β {name}: {e}')
all_good = False
return all_good
def main():
"""Run quick audit."""
logger.info('')
logger.info('β' + 'β'*58 + 'β')
logger.info('β MEDCARE-DDI QUICK PRODUCTION AUDIT' + ' '*24 + 'β')
logger.info('β' + 'β'*58 + 'β')
results = {
'Files': audit_files(),
'Metadata': audit_metadata(),
'Config': audit_model_config(),
'Metrics': audit_summary_metrics(),
'Code': audit_code_structure(),
}
logger.info('')
logger.info('='*60)
logger.info('AUDIT SUMMARY')
logger.info('='*60)
all_passed = all(results.values())
status = 'β READY' if all_passed else 'β NEEDS_ATTENTION'
logger.info(f'{status} - Production system status')
for check, passed in results.items():
status = 'β' if passed else 'β'
logger.info(f'{status} {check}')
logger.info('')
# Save report
report = {
'timestamp': __import__('datetime').datetime.now().isoformat(),
'checks': results,
'status': 'READY' if all_passed else 'NEEDS_ATTENTION',
}
report_path = MODEL_DIR / 'reports' / 'quick_audit.json'
report_path.parent.mkdir(parents=True, exist_ok=True)
with open(report_path, 'w') as f:
json.dump(report, f, indent=2)
logger.info(f'β Report saved to {report_path}')
logger.info('')
if __name__ == '__main__':
main()
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