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epipred
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<!DOCTYPE html>
<html lang="en">
<head>
    <meta charset="UTF-8">
    <meta name="viewport" content="width=device-width, initial-scale=1.0">
    <title>{% block title %}EpiPred - Epitope Prediction Tool{% endblock %}</title>
    
    <!-- Favicon -->
    <link rel="icon" type="image/png" href="{{ url_for('static', filename='logo.png') }}">
    
    <!-- Bootstrap CSS -->
    <link href="https://cdn.jsdelivr.net/npm/bootstrap@5.1.3/dist/css/bootstrap.min.css" rel="stylesheet">
    <!-- Font Awesome -->
    <link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.0.0/css/all.min.css" rel="stylesheet">
    <!-- Custom CSS -->
    <link href="{{ url_for('static', filename='css/style.css') }}" rel="stylesheet">
    
    {% block extra_head %}{% endblock %}
</head>
<body>
    <!-- Navigation -->
    <nav class="navbar navbar-expand-lg navbar-dark bg-primary">
        <div class="container">
            <a class="navbar-brand" href="{{ url_for('index') }}">
                <img src="{{ url_for('static', filename='logo.png') }}" alt="EpiPred" height="30" class="d-inline-block align-text-top me-2">
                EpiPred
            </a>
            <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarNav">
                <span class="navbar-toggler-icon"></span>
            </button>
            <div class="collapse navbar-collapse" id="navbarNav">
                <ul class="navbar-nav ms-auto">
                    <li class="nav-item">
                        <a class="nav-link" href="{{ url_for('index') }}">
                            <i class="fas fa-home me-1"></i>Home
                        </a>
                    </li>
                    <li class="nav-item">
                        <a class="nav-link" href="{{ url_for('instructions') }}">
                            <i class="fas fa-info-circle me-1"></i>Instructions
                        </a>
                    </li>
                    <li class="nav-item">
                        <a class="nav-link" href="{{ url_for('about') }}">
                            <i class="fas fa-question-circle me-1"></i>About
                        </a>
                    </li>
                </ul>
            </div>
        </div>
    </nav>

    <!-- Header -->
    <div class="bg-light py-4">
        <div class="container">
            <div class="row">
                <div class="col-md-8">
                    <h1 class="display-6 mb-2">{% block page_title %}EpiPred - Epitope Prediction Tool{% endblock %}</h1>
                    <p class="lead text-muted">{% block page_subtitle %}Prediction of potential B-cell and T-cell epitopes{% endblock %}</p>
                </div>
                <div class="col-md-4 text-end">
                    <img src="{{ url_for('static', filename='logo.png') }}" alt="EpiPred Logo" class="img-fluid logo-header">
                </div>
            </div>
        </div>
    </div>

    <!-- Flash Messages -->
    {% with messages = get_flashed_messages(with_categories=true) %}
        {% if messages %}
            <div class="container mt-3">
                {% for category, message in messages %}
                    <div class="alert alert-{{ 'danger' if category == 'error' else 'success' if category == 'success' else 'info' }} alert-dismissible fade show" role="alert">
                        <i class="fas fa-{{ 'exclamation-triangle' if category == 'error' else 'check-circle' if category == 'success' else 'info-circle' }} me-2"></i>
                        {{ message }}
                        <button type="button" class="btn-close" data-bs-dismiss="alert"></button>
                    </div>
                {% endfor %}
            </div>
        {% endif %}
    {% endwith %}

    <!-- Main Content -->
    <main class="container my-4">
        {% block content %}{% endblock %}
    </main>

    <!-- Footer -->
    <footer class="bg-dark text-light py-4 mt-5">
        <div class="container">
            <div class="row">
                <div class="col-md-6">
                    <div class="d-flex align-items-center">
                        <img src="{{ url_for('static', filename='logo.png') }}" alt="EpiPred" class="me-3 logo-footer">
                        <div>
                            <h5>EpiPred - Epitope Prediction Tool</h5>
                            <p class="mb-0">Advanced machine learning for epitope prediction</p>
                        </div>
                    </div>
                </div>
                <div class="col-md-6 text-end">
                    <p class="mb-0">
                        <small>
                            Powered by Deep Learning &amp; Attention Mechanisms<br>
                            <i class="fas fa-code me-1"></i>Built with Flask &amp; TensorFlow
                        </small>
                    </p>
                </div>
            </div>
        </div>
    </footer>

    <!-- Bootstrap JS -->
    <script src="https://cdn.jsdelivr.net/npm/bootstrap@5.1.3/dist/js/bootstrap.bundle.min.js"></script>
    <!-- jQuery -->
    <script src="https://code.jquery.com/jquery-3.6.0.min.js"></script>
    <!-- Custom JS -->
    <script src="{{ url_for('static', filename='js/main.js') }}"></script>
    
    {% block extra_scripts %}{% endblock %}
</body>
</html>