Update app.py
Browse files
app.py
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@@ -7,9 +7,21 @@ from fastapi.middleware.cors import CORSMiddleware
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from mcp.orchestrator import orchestrate_search, answer_ai_question
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from mcp.schemas import UnifiedSearchInput, UnifiedSearchResult
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#
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api
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@api.post("/unified_search", response_model=UnifiedSearchResult)
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async def unified_search_endpoint(data: UnifiedSearchInput):
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@@ -19,46 +31,79 @@ async def unified_search_endpoint(data: UnifiedSearchInput):
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async def ask_ai_endpoint(question: str, context: str = ""):
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return await answer_ai_question(question, context)
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#
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def render_ui():
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st.set_page_config(page_title="
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st.image("assets/logo.png", width=100)
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st.title("π¬ Next-Gen AI-Powered Biomedical Research Assistant")
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st.markdown(
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"""
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*Combine the power of ArXiv, PubMed, UMLS, OpenFDA, and OpenAI.
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Get instant, unified, semantically-ranked answersβplus drug safety, concept enrichment, and expert Q&A!*
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"""
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results = orchestrate_search(query)
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st.success("
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st.
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st.write(f"- {link}")
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st.markdown("---")
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st.subheader("
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follow_up = st.text_input("
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if st.button("Ask AI"):
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with st.spinner("
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st.success("AI
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st.write(
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if __name__ == "__main__":
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import sys
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from mcp.orchestrator import orchestrate_search, answer_ai_question
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from mcp.schemas import UnifiedSearchInput, UnifiedSearchResult
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# --- FASTAPI BACKEND ---
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api = FastAPI(
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title="Ultimate Research MCP Server",
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version="2.0.0",
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description="AI-powered unified biomedical search using ArXiv, PubMed, OpenFDA, UMLS, and OpenAI."
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)
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api.add_middleware(
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CORSMiddleware,
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allow_origins=["*"],
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allow_credentials=True,
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allow_methods=["*"],
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allow_headers=["*"],
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)
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@api.post("/unified_search", response_model=UnifiedSearchResult)
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async def unified_search_endpoint(data: UnifiedSearchInput):
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async def ask_ai_endpoint(question: str, context: str = ""):
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return await answer_ai_question(question, context)
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# --- STREAMLIT UI ---
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def render_ui():
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st.set_page_config(page_title="Neo Cures AI", layout="wide")
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# Header with logo
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col1, col2 = st.columns([0.15, 0.85])
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with col1:
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st.image("assets/logo.png", width=100)
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with col2:
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st.markdown("""
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## 𧬠**Neo Cures AI** β Advanced Biomedical Research Assistant
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*Powered by GPT-4o, PubMed, ArXiv, OpenFDA, and UMLS*
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""")
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st.caption("Built by Oluwafemi Idiakhoa | Hugging Face Spaces")
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st.markdown("---")
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# Unified Semantic Search
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st.subheader("π Unified Semantic Search")
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query = st.text_input("Enter your biomedical research question:", placeholder="e.g. New treatments for glioblastoma using CRISPR")
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if st.button("Run Search π"):
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with st.spinner("Thinking... Gathering and analyzing data across 5 systems..."):
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results = orchestrate_search(query)
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st.success("Search complete! π")
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# Papers
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st.markdown("### π Most Relevant Papers")
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for i, paper in enumerate(results["papers"], 1):
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st.markdown(f"**{i}. [{paper['title']}]({paper['link']})** \n*{paper['authors']}* ({paper['source']})")
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st.markdown(f"<div style='font-size: 0.9em; color: gray'>{paper['summary']}</div>", unsafe_allow_html=True)
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# UMLS Concepts
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st.markdown("### π§ Biomedical Concept Enrichment (UMLS)")
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for concept in results["umls"]:
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if concept["cui"]:
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st.markdown(f"πΉ **{concept['name']}** (CUI: `{concept['cui']}`): {concept['definition'] or 'No definition available'}")
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# Drug Safety
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st.markdown("### π Drug Safety Insights (OpenFDA)")
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for drug_report in results["drug_safety"]:
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if drug_report:
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st.json(drug_report)
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# AI Summary
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st.markdown("### π€ AI-Powered Summary")
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st.info(results["ai_summary"])
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# Suggested Reading
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st.markdown("### π Suggested Links")
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for link in results["suggested_reading"]:
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st.write(f"- {link}")
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# Follow-up AI Q&A
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st.markdown("---")
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st.subheader("π¬ Ask AI a Follow-up Question")
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follow_up = st.text_input("What do you want to ask based on the above?", placeholder="e.g. What's the most promising therapy?")
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if st.button("Ask AI"):
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with st.spinner("Analyzing and responding..."):
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ai_answer = answer_ai_question(follow_up, context=query)
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st.success("AI's Response:")
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st.write(ai_answer["answer"])
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# Footer
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st.markdown("---")
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st.markdown(
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"<div style='text-align: center; font-size: 0.9em;'>"
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"β¨ Built with β€οΈ by <strong>Oluwafemi Idiakhoa</strong> β’ Powered by FastAPI, Streamlit, Hugging Face, OpenAI, UMLS, OpenFDA, and NCBI</div>",
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unsafe_allow_html=True
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)
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# --- MAIN ENTRY ---
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if __name__ == "__main__":
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import sys
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