Update mcp/gene_hub.py
Browse files- mcp/gene_hub.py +15 -11
mcp/gene_hub.py
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"""
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async def resolve_gene(symbol: str) -> dict:
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"""
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Return the first non-empty gene record.
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The order is chosen for speed & richness.
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"""
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for fn in (fetch_gene_info, fetch_ensembl, fetch_ot):
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try:
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data = await fn(symbol)
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if data:
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return data
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except Exception:
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pass
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return {}
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"""
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gene_hub β resolve_gene() tries three sources in order of speed & richness.
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1. MyGene.info (v3) β 500 QPS key tier :contentReference[oaicite:3]{index=3}
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2. Ensembl REST β key-less, species-agnostic :contentReference[oaicite:4]{index=4}
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3. Open Targets GQL β tractability & constraint :contentReference[oaicite:5]{index=5}
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"""
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from mcp.mygene import fetch_gene_info
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from mcp.ensembl import fetch_ensembl
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from mcp.opentargets import fetch_ot
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async def resolve_gene(symbol: str) -> dict:
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"""Return first non-empty gene record; never raises."""
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for fn in (fetch_gene_info, fetch_ensembl, fetch_ot):
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try:
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data = await fn(symbol)
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if data:
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return data
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except Exception: # network hiccup / 429 etc.
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pass
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return {}
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