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Create app.py
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app.py
ADDED
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| 1 |
+
"""
|
| 2 |
+
🫁 AST Chest X-Ray Lab
|
| 3 |
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Multi-Class Chest X-Ray Detection (Normal · TB · Pneumonia · COVID-19)
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| 4 |
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with Adaptive Sparse Training & Explainable AI (Grad-CAM)
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| 5 |
+
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| 6 |
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This app is a research / screening tool – not a diagnostic device.
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| 7 |
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"""
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| 8 |
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| 9 |
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import io
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from pathlib import Path
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import cv2
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import gradio as gr
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+
import matplotlib
|
| 15 |
+
matplotlib.use("Agg") # non-interactive backend for servers
|
| 16 |
+
import matplotlib.pyplot as plt
|
| 17 |
+
import numpy as np
|
| 18 |
+
import torch
|
| 19 |
+
import torch.nn as nn
|
| 20 |
+
from PIL import Image
|
| 21 |
+
from torchvision import models, transforms
|
| 22 |
+
|
| 23 |
+
# ============================================================================
|
| 24 |
+
# Model Setup
|
| 25 |
+
# ============================================================================
|
| 26 |
+
|
| 27 |
+
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
|
| 28 |
+
|
| 29 |
+
NUM_CLASSES = 4
|
| 30 |
+
|
| 31 |
+
# Backbone: EfficientNet-B0 with 4-class head
|
| 32 |
+
model = models.efficientnet_b0(weights=None)
|
| 33 |
+
model.classifier[1] = nn.Linear(model.classifier[1].in_features, NUM_CLASSES)
|
| 34 |
+
|
| 35 |
+
# Where we expect the (4-class) checkpoint to live
|
| 36 |
+
checkpoint_candidates = [
|
| 37 |
+
"checkpoints/best.pt", # main location (from your HF screenshot)
|
| 38 |
+
"best.pt", # optional fallback in root
|
| 39 |
+
]
|
| 40 |
+
|
| 41 |
+
MODEL_LOAD_INFO = ""
|
| 42 |
+
loaded = False
|
| 43 |
+
|
| 44 |
+
|
| 45 |
+
def extract_state_dict(ckpt):
|
| 46 |
+
"""
|
| 47 |
+
Handle both:
|
| 48 |
+
- plain state_dict (just param tensors)
|
| 49 |
+
- training checkpoints: keys like 'model_state_dict', 'state_dict', 'model', etc.
|
| 50 |
+
"""
|
| 51 |
+
if isinstance(ckpt, dict):
|
| 52 |
+
for key in ["model_state_dict", "state_dict", "model"]:
|
| 53 |
+
if key in ckpt and isinstance(ckpt[key], dict):
|
| 54 |
+
return ckpt[key]
|
| 55 |
+
return ckpt
|
| 56 |
+
|
| 57 |
+
|
| 58 |
+
for ckpt_path in checkpoint_candidates:
|
| 59 |
+
if Path(ckpt_path).is_file():
|
| 60 |
+
try:
|
| 61 |
+
print(f"🔍 Trying to load weights from: {ckpt_path}")
|
| 62 |
+
raw_ckpt = torch.load(ckpt_path, map_location=device)
|
| 63 |
+
state_dict = extract_state_dict(raw_ckpt)
|
| 64 |
+
|
| 65 |
+
# Sanity check: classifier head must be 4-way
|
| 66 |
+
if "classifier.1.weight" in state_dict:
|
| 67 |
+
out_features = state_dict["classifier.1.weight"].shape[0]
|
| 68 |
+
if out_features != NUM_CLASSES:
|
| 69 |
+
raise ValueError(
|
| 70 |
+
f"Checkpoint at {ckpt_path} has {out_features} output "
|
| 71 |
+
f"classes, but this app expects {NUM_CLASSES}."
|
| 72 |
+
)
|
| 73 |
+
|
| 74 |
+
model.load_state_dict(state_dict, strict=True)
|
| 75 |
+
|
| 76 |
+
MODEL_LOAD_INFO = (
|
| 77 |
+
f"✅ Model loaded from <b>{ckpt_path}</b> on <b>{device.type.upper()}</b>."
|
| 78 |
+
)
|
| 79 |
+
loaded = True
|
| 80 |
+
break
|
| 81 |
+
except Exception as e:
|
| 82 |
+
print(f"⚠️ Found {ckpt_path} but failed to load model_state_dict: {e}")
|
| 83 |
+
|
| 84 |
+
if not loaded:
|
| 85 |
+
raise RuntimeError(
|
| 86 |
+
"Model file not found or could not be loaded.\n"
|
| 87 |
+
"Expected a 4-class EfficientNet checkpoint at 'checkpoints/best.pt' or 'best.pt'.\n"
|
| 88 |
+
"If you saved a training checkpoint, make sure it contains "
|
| 89 |
+
"a 'model_state_dict' key with the 4-class EfficientNet weights."
|
| 90 |
+
)
|
| 91 |
+
|
| 92 |
+
model = model.to(device)
|
| 93 |
+
model.eval()
|
| 94 |
+
|
| 95 |
+
TOTAL_PARAMS = sum(p.numel() for p in model.parameters())
|
| 96 |
+
TOTAL_PARAMS_M = TOTAL_PARAMS / 1e6
|
| 97 |
+
|
| 98 |
+
# ============================================================================
|
| 99 |
+
# Classes & Preprocessing
|
| 100 |
+
# ============================================================================
|
| 101 |
+
|
| 102 |
+
CLASSES = ["Normal", "Tuberculosis", "Pneumonia", "COVID-19"]
|
| 103 |
+
CLASS_COLORS = {
|
| 104 |
+
"Normal": "#22c55e", # Green
|
| 105 |
+
"Tuberculosis": "#ef4444", # Red
|
| 106 |
+
"Pneumonia": "#f97316", # Orange
|
| 107 |
+
"COVID-19": "#a855f7", # Purple
|
| 108 |
+
}
|
| 109 |
+
|
| 110 |
+
transform = transforms.Compose(
|
| 111 |
+
[
|
| 112 |
+
transforms.Resize(256),
|
| 113 |
+
transforms.CenterCrop(224),
|
| 114 |
+
transforms.ToTensor(),
|
| 115 |
+
transforms.Normalize(
|
| 116 |
+
[0.485, 0.456, 0.406],
|
| 117 |
+
[0.229, 0.224, 0.225],
|
| 118 |
+
),
|
| 119 |
+
]
|
| 120 |
+
)
|
| 121 |
+
|
| 122 |
+
# ============================================================================
|
| 123 |
+
# Grad-CAM Implementation
|
| 124 |
+
# ============================================================================
|
| 125 |
+
|
| 126 |
+
|
| 127 |
+
class GradCAM:
|
| 128 |
+
def __init__(self, model, target_layer):
|
| 129 |
+
self.model = model
|
| 130 |
+
self.target_layer = target_layer
|
| 131 |
+
self.gradients = None
|
| 132 |
+
self.activations = None
|
| 133 |
+
|
| 134 |
+
def save_gradient(grad):
|
| 135 |
+
self.gradients = grad
|
| 136 |
+
|
| 137 |
+
def save_activation(module, input, output):
|
| 138 |
+
self.activations = output.detach()
|
| 139 |
+
|
| 140 |
+
target_layer.register_forward_hook(save_activation)
|
| 141 |
+
target_layer.register_full_backward_hook(lambda m, gi, go: save_gradient(go[0]))
|
| 142 |
+
|
| 143 |
+
def generate(self, input_image, target_class=None):
|
| 144 |
+
output = self.model(input_image)
|
| 145 |
+
|
| 146 |
+
if target_class is None:
|
| 147 |
+
target_class = output.argmax(dim=1)
|
| 148 |
+
|
| 149 |
+
self.model.zero_grad()
|
| 150 |
+
one_hot = torch.zeros_like(output)
|
| 151 |
+
one_hot[0, target_class] = 1
|
| 152 |
+
output.backward(gradient=one_hot, retain_graph=True)
|
| 153 |
+
|
| 154 |
+
if self.gradients is None:
|
| 155 |
+
return None, output
|
| 156 |
+
|
| 157 |
+
weights = self.gradients.mean(dim=(2, 3), keepdim=True)
|
| 158 |
+
cam = (weights * self.activations).sum(dim=1, keepdim=True)
|
| 159 |
+
cam = torch.relu(cam)
|
| 160 |
+
cam = cam.squeeze().cpu().numpy()
|
| 161 |
+
cam = (cam - cam.min()) / (cam.max() - cam.min() + 1e-8)
|
| 162 |
+
|
| 163 |
+
return cam, output
|
| 164 |
+
|
| 165 |
+
|
| 166 |
+
target_layer = model.features[-1]
|
| 167 |
+
grad_cam = GradCAM(model, target_layer)
|
| 168 |
+
|
| 169 |
+
# ============================================================================
|
| 170 |
+
# Visualization Helpers
|
| 171 |
+
# ============================================================================
|
| 172 |
+
|
| 173 |
+
|
| 174 |
+
def _figure_to_pil():
|
| 175 |
+
buf = io.BytesIO()
|
| 176 |
+
plt.savefig(buf, format="png", dpi=150, bbox_inches="tight", facecolor="white")
|
| 177 |
+
plt.close()
|
| 178 |
+
buf.seek(0)
|
| 179 |
+
return Image.open(buf)
|
| 180 |
+
|
| 181 |
+
|
| 182 |
+
def create_original_display(image, pred_label, confidence):
|
| 183 |
+
fig, ax = plt.subplots(figsize=(7, 7))
|
| 184 |
+
ax.imshow(image)
|
| 185 |
+
ax.axis("off")
|
| 186 |
+
|
| 187 |
+
color = CLASS_COLORS[pred_label]
|
| 188 |
+
title = f"Prediction: {pred_label} • Confidence: {confidence:.1f}%"
|
| 189 |
+
ax.set_title(
|
| 190 |
+
title,
|
| 191 |
+
fontsize=16,
|
| 192 |
+
fontweight="bold",
|
| 193 |
+
color=color,
|
| 194 |
+
pad=20,
|
| 195 |
+
)
|
| 196 |
+
plt.tight_layout()
|
| 197 |
+
return _figure_to_pil()
|
| 198 |
+
|
| 199 |
+
|
| 200 |
+
def create_gradcam_visualization(image, cam):
|
| 201 |
+
img_array = np.array(image.resize((224, 224)))
|
| 202 |
+
cam_resized = cv2.resize(cam, (224, 224))
|
| 203 |
+
|
| 204 |
+
heatmap = cv2.applyColorMap(np.uint8(255 * cam_resized), cv2.COLORMAP_JET)
|
| 205 |
+
heatmap = cv2.cvtColor(heatmap, cv2.COLOR_BGR2RGB)
|
| 206 |
+
|
| 207 |
+
fig, ax = plt.subplots(figsize=(7, 7))
|
| 208 |
+
ax.imshow(heatmap)
|
| 209 |
+
ax.axis("off")
|
| 210 |
+
ax.set_title(
|
| 211 |
+
"Attention Heatmap\n(Where the model is focusing)",
|
| 212 |
+
fontsize=14,
|
| 213 |
+
fontweight="bold",
|
| 214 |
+
pad=20,
|
| 215 |
+
)
|
| 216 |
+
plt.tight_layout()
|
| 217 |
+
return _figure_to_pil()
|
| 218 |
+
|
| 219 |
+
|
| 220 |
+
def create_overlay_visualization(image, cam):
|
| 221 |
+
img_array = np.array(image.resize((224, 224))) / 255.0
|
| 222 |
+
cam_resized = cv2.resize(cam, (224, 224))
|
| 223 |
+
|
| 224 |
+
heatmap = cv2.applyColorMap(np.uint8(255 * cam_resized), cv2.COLORMAP_JET)
|
| 225 |
+
heatmap = cv2.cvtColor(heatmap, cv2.COLOR_BGR2RGB) / 255.0
|
| 226 |
+
|
| 227 |
+
overlay = img_array * 0.5 + heatmap * 0.5
|
| 228 |
+
overlay = np.clip(overlay, 0, 1)
|
| 229 |
+
|
| 230 |
+
fig, ax = plt.subplots(figsize=(7, 7))
|
| 231 |
+
ax.imshow(overlay)
|
| 232 |
+
ax.axis("off")
|
| 233 |
+
ax.set_title(
|
| 234 |
+
"Explainable AI Overlay\n(Anatomy + Model Attention)",
|
| 235 |
+
fontsize=14,
|
| 236 |
+
fontweight="bold",
|
| 237 |
+
pad=20,
|
| 238 |
+
)
|
| 239 |
+
plt.tight_layout()
|
| 240 |
+
return _figure_to_pil()
|
| 241 |
+
|
| 242 |
+
|
| 243 |
+
def create_probability_bar(results):
|
| 244 |
+
"""Horizontal bar chart of 4-class probabilities."""
|
| 245 |
+
classes = list(results.keys())
|
| 246 |
+
values = [results[c] for c in classes]
|
| 247 |
+
y_pos = np.arange(len(classes))
|
| 248 |
+
|
| 249 |
+
fig, ax = plt.subplots(figsize=(6.4, 3.5))
|
| 250 |
+
ax.barh(y_pos, values)
|
| 251 |
+
ax.set_yticks(y_pos)
|
| 252 |
+
ax.set_yticklabels(classes)
|
| 253 |
+
ax.invert_yaxis()
|
| 254 |
+
ax.set_xlim(0, 100)
|
| 255 |
+
ax.set_xlabel("Probability (%)")
|
| 256 |
+
ax.set_title("Probability Profile by Class", fontsize=12, fontweight="bold")
|
| 257 |
+
for i, v in enumerate(values):
|
| 258 |
+
ax.text(v + 1, i, f"{v:.1f}%", va="center", fontsize=9)
|
| 259 |
+
plt.tight_layout()
|
| 260 |
+
return _figure_to_pil()
|
| 261 |
+
|
| 262 |
+
# ============================================================================
|
| 263 |
+
# Interpretation
|
| 264 |
+
# ============================================================================
|
| 265 |
+
|
| 266 |
+
|
| 267 |
+
def triage_label(pred_label, confidence):
|
| 268 |
+
"""
|
| 269 |
+
Simple triage categorisation for clinicians / dashboards.
|
| 270 |
+
"""
|
| 271 |
+
high = confidence >= 85
|
| 272 |
+
moderate = 65 <= confidence < 85
|
| 273 |
+
|
| 274 |
+
if pred_label == "Normal":
|
| 275 |
+
if high:
|
| 276 |
+
return "🟢 Low risk – no major abnormality detected (model view)"
|
| 277 |
+
elif moderate:
|
| 278 |
+
return "🟡 Likely normal, but low confidence – consider clinical context"
|
| 279 |
+
else:
|
| 280 |
+
return "🟡 Indeterminate – imaging looks close to normal, but model is uncertain"
|
| 281 |
+
else:
|
| 282 |
+
if high:
|
| 283 |
+
return "🔴 High risk finding – prioritise expert review"
|
| 284 |
+
elif moderate:
|
| 285 |
+
return "🟠 Possible pathology – correlate with symptoms and labs"
|
| 286 |
+
else:
|
| 287 |
+
return "🟡 Weak signal – treat as a soft flag, not a diagnosis"
|
| 288 |
+
|
| 289 |
+
|
| 290 |
+
def create_interpretation(pred_label, confidence, results, audience="Clinician"):
|
| 291 |
+
header_note = {
|
| 292 |
+
"Clinician": "Optimised for **clinical decision support** – not a replacement for your judgement.",
|
| 293 |
+
"Researcher": "Optimised for **model behaviour analysis** and experimental workflows.",
|
| 294 |
+
"Patient / Public": "Optimised for **patient-friendly language**. Always discuss results with a doctor.",
|
| 295 |
+
}.get(audience, "Use this output as a **screening aid**, not a final diagnosis.")
|
| 296 |
+
|
| 297 |
+
interpretation = f"""
|
| 298 |
+
## 🔬 Analysis Results ({audience} View)
|
| 299 |
+
|
| 300 |
+
> {header_note}
|
| 301 |
+
|
| 302 |
+
### Primary Prediction: **{pred_label}**
|
| 303 |
+
- Confidence: **{confidence:.1f}%**
|
| 304 |
+
- Triage comment: {triage_label(pred_label, confidence)}
|
| 305 |
+
|
| 306 |
+
### Probability Breakdown
|
| 307 |
+
- 🟢 Normal: **{results['Normal']:.1f}%**
|
| 308 |
+
- 🔴 Tuberculosis: **{results['Tuberculosis']:.1f}%**
|
| 309 |
+
- 🟠 Pneumonia: **{results['Pneumonia']:.1f}%**
|
| 310 |
+
- 🟣 COVID-19: **{results['COVID-19']:.1f}%**
|
| 311 |
+
|
| 312 |
+
---
|
| 313 |
+
"""
|
| 314 |
+
|
| 315 |
+
# Disease-specific narrative
|
| 316 |
+
if pred_label == "Tuberculosis":
|
| 317 |
+
if confidence >= 85:
|
| 318 |
+
interpretation += """
|
| 319 |
+
### 🧫 TB Pattern – High Confidence
|
| 320 |
+
|
| 321 |
+
The model has detected features strongly suggestive of **pulmonary tuberculosis**.
|
| 322 |
+
|
| 323 |
+
**Suggested Clinical Pathway**
|
| 324 |
+
1. Prompt review by a clinician / chest physician
|
| 325 |
+
2. Sputum testing (AFB smear, GeneXpert MTB/RIF, or TB-PCR)
|
| 326 |
+
3. Correlate with symptoms:
|
| 327 |
+
- Chronic cough (>2 weeks)
|
| 328 |
+
- Weight loss, night sweats
|
| 329 |
+
- Fever, fatigue
|
| 330 |
+
- Haemoptysis
|
| 331 |
+
4. Consider CT or further imaging if discordant with clinical picture
|
| 332 |
+
5. Infection control and contact tracing as per TB guidelines
|
| 333 |
+
"""
|
| 334 |
+
else:
|
| 335 |
+
interpretation += """
|
| 336 |
+
### 🧫 TB Pattern – Possible
|
| 337 |
+
|
| 338 |
+
There are features that **could** be compatible with TB, but the confidence is moderate.
|
| 339 |
+
|
| 340 |
+
- Review history and risk factors
|
| 341 |
+
- Consider sputum testing if suspicion is non-trivial
|
| 342 |
+
- Follow-up imaging where indicated
|
| 343 |
+
"""
|
| 344 |
+
|
| 345 |
+
elif pred_label == "Pneumonia":
|
| 346 |
+
if confidence >= 85:
|
| 347 |
+
interpretation += """
|
| 348 |
+
### 🌫 Pneumonia Pattern – High Confidence
|
| 349 |
+
|
| 350 |
+
The model has detected an opacity pattern consistent with **pneumonia**.
|
| 351 |
+
|
| 352 |
+
Typical clinical picture may include:
|
| 353 |
+
|
| 354 |
+
- Fever, productive cough
|
| 355 |
+
- Shortness of breath
|
| 356 |
+
- Pleuritic chest pain
|
| 357 |
+
|
| 358 |
+
Use in combination with examination, labs (WBC, CRP, cultures) and local treatment guidelines.
|
| 359 |
+
"""
|
| 360 |
+
else:
|
| 361 |
+
interpretation += """
|
| 362 |
+
### 🌫 Pneumonia Pattern – Possible
|
| 363 |
+
|
| 364 |
+
Findings may be compatible with pneumonia, but alternative explanations exist.
|
| 365 |
+
|
| 366 |
+
- Check vitals and respiratory exam
|
| 367 |
+
- Labs and microbiology can support or refute the impression
|
| 368 |
+
- Consider watchful follow-up or repeat imaging
|
| 369 |
+
"""
|
| 370 |
+
|
| 371 |
+
elif pred_label == "COVID-19":
|
| 372 |
+
if confidence >= 85:
|
| 373 |
+
interpretation += """
|
| 374 |
+
### 🦠 COVID-19 Pattern – High Confidence
|
| 375 |
+
|
| 376 |
+
The distribution and appearance of opacities are compatible with **COVID-19 pneumonia**.
|
| 377 |
+
|
| 378 |
+
⚠️ Imaging alone is **not diagnostic**. Key points:
|
| 379 |
+
|
| 380 |
+
- Confirmation requires RT-PCR or validated antigen testing
|
| 381 |
+
- Follow local isolation and infection-control policies
|
| 382 |
+
- Monitor SpO₂ and work of breathing; escalate care if deterioration occurs
|
| 383 |
+
"""
|
| 384 |
+
else:
|
| 385 |
+
interpretation += """
|
| 386 |
+
### 🦠 COVID-19 Pattern – Possible
|
| 387 |
+
|
| 388 |
+
There are features that could overlap with COVID-19, but uncertainty is substantial.
|
| 389 |
+
|
| 390 |
+
- Testing (RT-PCR / antigen) is essential
|
| 391 |
+
- Integrate exposure history, symptoms, and public health guidance
|
| 392 |
+
"""
|
| 393 |
+
|
| 394 |
+
else: # Normal
|
| 395 |
+
if confidence >= 85:
|
| 396 |
+
interpretation += """
|
| 397 |
+
### ✅ No Major Abnormality Detected (Model View)
|
| 398 |
+
|
| 399 |
+
The model did **not** detect strong features of TB, pneumonia, or COVID-19.
|
| 400 |
+
|
| 401 |
+
**Important caveats**
|
| 402 |
+
|
| 403 |
+
- Early disease or small lesions may be missed
|
| 404 |
+
- Non-infective conditions (e.g. malignancy, ILD) are **not** specifically evaluated
|
| 405 |
+
- Persistent or unexplained symptoms still require clinical review
|
| 406 |
+
"""
|
| 407 |
+
else:
|
| 408 |
+
interpretation += """
|
| 409 |
+
### ℹ️ Likely Normal, But Low Confidence
|
| 410 |
+
|
| 411 |
+
The scan leans towards **normal**, but the model's confidence is limited.
|
| 412 |
+
|
| 413 |
+
- Consider repeat imaging, further tests, or expert review if symptoms persist
|
| 414 |
+
"""
|
| 415 |
+
|
| 416 |
+
interpretation += """
|
| 417 |
+
---
|
| 418 |
+
## ⚠️ CRITICAL MEDICAL DISCLAIMER
|
| 419 |
+
|
| 420 |
+
- This AI system is a **screening / decision-support tool** only
|
| 421 |
+
- It is **not FDA-approved**, CE-marked, or licensed as a medical device
|
| 422 |
+
- It must **not** be used as a stand-alone diagnostic system
|
| 423 |
+
|
| 424 |
+
Always integrate:
|
| 425 |
+
- Clinical history and examination
|
| 426 |
+
- Laboratory tests (e.g. sputum AFB / GeneXpert, PCR, cultures)
|
| 427 |
+
- Radiologist / specialist interpretation
|
| 428 |
+
|
| 429 |
+
**Gold Standards**
|
| 430 |
+
|
| 431 |
+
- Tuberculosis: Sputum AFB / culture, GeneXpert MTB/RIF, TB-PCR
|
| 432 |
+
- Pneumonia: Clinical diagnosis + labs / microbiology
|
| 433 |
+
- COVID-19: RT-PCR or validated antigen tests
|
| 434 |
+
|
| 435 |
+
When in doubt, consult a qualified healthcare professional.
|
| 436 |
+
---
|
| 437 |
+
🫁 **Powered by Adaptive Sparse Training (AST)**
|
| 438 |
+
Energy-efficient deep learning to support lung health in both high-resource and low-resource settings.
|
| 439 |
+
|
| 440 |
+
**Project Links**
|
| 441 |
+
|
| 442 |
+
- GitHub: https://github.com/oluwafemidiakhoa/Tuberculosis
|
| 443 |
+
- Hugging Face Space: https://huggingface.co/spaces/mgbam/Tuberculosis
|
| 444 |
+
"""
|
| 445 |
+
return interpretation
|
| 446 |
+
|
| 447 |
+
# ============================================================================
|
| 448 |
+
# Prediction Pipeline
|
| 449 |
+
# ============================================================================
|
| 450 |
+
|
| 451 |
+
|
| 452 |
+
def predict_chest_xray(image, show_gradcam=True, audience="Clinician"):
|
| 453 |
+
"""
|
| 454 |
+
Main inference function used by Gradio.
|
| 455 |
+
Returns:
|
| 456 |
+
- dict of class probabilities
|
| 457 |
+
- annotated original
|
| 458 |
+
- grad-cam heatmap
|
| 459 |
+
- overlay
|
| 460 |
+
- full markdown report
|
| 461 |
+
- short textual snapshot
|
| 462 |
+
- probability bar-chart image
|
| 463 |
+
"""
|
| 464 |
+
if image is None:
|
| 465 |
+
msg = "👋 Upload a chest X-ray (PNG/JPG) and click **Analyze** to generate a full AI report."
|
| 466 |
+
return {}, None, None, None, msg, "Awaiting image upload…", None
|
| 467 |
+
|
| 468 |
+
if isinstance(image, np.ndarray):
|
| 469 |
+
image = Image.fromarray(image).convert("RGB")
|
| 470 |
+
else:
|
| 471 |
+
image = image.convert("RGB")
|
| 472 |
+
|
| 473 |
+
original_img = image.copy()
|
| 474 |
+
input_tensor = transform(image).unsqueeze(0).to(device)
|
| 475 |
+
|
| 476 |
+
with torch.set_grad_enabled(show_gradcam):
|
| 477 |
+
if show_gradcam:
|
| 478 |
+
cam, output = grad_cam.generate(input_tensor)
|
| 479 |
+
else:
|
| 480 |
+
output = model(input_tensor)
|
| 481 |
+
cam = None
|
| 482 |
+
|
| 483 |
+
probs = torch.softmax(output, dim=1)[0].cpu().detach().numpy()
|
| 484 |
+
prob_sum = float(np.sum(probs))
|
| 485 |
+
|
| 486 |
+
if not (0.99 <= prob_sum <= 1.01):
|
| 487 |
+
print(f"⚠️ WARNING: Probability sum is {prob_sum}, not ≈1.0 – check model weights.")
|
| 488 |
+
|
| 489 |
+
pred_class = int(output.argmax(dim=1).item())
|
| 490 |
+
pred_label = CLASSES[pred_class]
|
| 491 |
+
confidence = float(probs[pred_class]) * 100.0
|
| 492 |
+
|
| 493 |
+
results = {
|
| 494 |
+
CLASSES[i]: float(min(100.0, max(0.0, probs[i] * 100.0)))
|
| 495 |
+
for i in range(len(CLASSES))
|
| 496 |
+
}
|
| 497 |
+
|
| 498 |
+
original_pil = create_original_display(original_img, pred_label, confidence)
|
| 499 |
+
gradcam_viz = create_gradcam_visualization(original_img, cam) if cam is not None else None
|
| 500 |
+
overlay_viz = create_overlay_visualization(original_img, cam) if cam is not None else None
|
| 501 |
+
prob_chart = create_probability_bar(results)
|
| 502 |
+
|
| 503 |
+
interpretation = create_interpretation(pred_label, confidence, results, audience=audience)
|
| 504 |
+
|
| 505 |
+
snapshot = (
|
| 506 |
+
f"### 📝 Triage Snapshot\n\n"
|
| 507 |
+
f"- **Finding:** {pred_label}\n"
|
| 508 |
+
f"- **Model confidence:** {confidence:.1f}%\n"
|
| 509 |
+
f"- **Triage comment:** {triage_label(pred_label, confidence)}\n"
|
| 510 |
+
f"- **Probability sum (sanity check):** {prob_sum:.3f}"
|
| 511 |
+
)
|
| 512 |
+
|
| 513 |
+
return results, original_pil, gradcam_viz, overlay_viz, interpretation, snapshot, prob_chart
|
| 514 |
+
|
| 515 |
+
# ============================================================================
|
| 516 |
+
# WOW UI / UX – Gradio App
|
| 517 |
+
# ============================================================================
|
| 518 |
+
|
| 519 |
+
custom_css = """
|
| 520 |
+
:root {
|
| 521 |
+
--primary: #6366f1;
|
| 522 |
+
--primary-soft: rgba(99, 102, 241, 0.12);
|
| 523 |
+
--accent: #ec4899;
|
| 524 |
+
}
|
| 525 |
+
|
| 526 |
+
.gradio-container {
|
| 527 |
+
font-family: system-ui, -apple-system, BlinkMacSystemFont, "Inter", sans-serif;
|
| 528 |
+
background: radial-gradient(circle at top left, #111827 0, #020617 50%, #020617 100%);
|
| 529 |
+
color: #e5e7eb;
|
| 530 |
+
}
|
| 531 |
+
|
| 532 |
+
#hero {
|
| 533 |
+
padding: 24px 24px 8px 24px;
|
| 534 |
+
border-radius: 24px;
|
| 535 |
+
background: linear-gradient(120deg, rgba(99,102,241,0.22), rgba(236,72,153,0.18));
|
| 536 |
+
border: 1px solid rgba(148, 163, 184, 0.45);
|
| 537 |
+
box-shadow: 0 24px 60px rgba(15,23,42,0.9);
|
| 538 |
+
backdrop-filter: blur(18px);
|
| 539 |
+
}
|
| 540 |
+
|
| 541 |
+
.hero-title {
|
| 542 |
+
font-size: 2.4rem;
|
| 543 |
+
font-weight: 800;
|
| 544 |
+
letter-spacing: 0.04em;
|
| 545 |
+
color: #f9fafb;
|
| 546 |
+
margin-bottom: 6px;
|
| 547 |
+
}
|
| 548 |
+
|
| 549 |
+
.hero-subtitle {
|
| 550 |
+
font-size: 0.98rem;
|
| 551 |
+
color: #e5e7eb;
|
| 552 |
+
}
|
| 553 |
+
|
| 554 |
+
.hero-chip-row {
|
| 555 |
+
display: flex;
|
| 556 |
+
flex-wrap: wrap;
|
| 557 |
+
gap: 8px;
|
| 558 |
+
margin-top: 14px;
|
| 559 |
+
}
|
| 560 |
+
|
| 561 |
+
.hero-chip {
|
| 562 |
+
padding: 4px 10px;
|
| 563 |
+
border-radius: 999px;
|
| 564 |
+
font-size: 0.78rem;
|
| 565 |
+
background: rgba(15,23,42,0.8);
|
| 566 |
+
border: 1px solid rgba(148,163,184,0.5);
|
| 567 |
+
display: inline-flex;
|
| 568 |
+
align-items: center;
|
| 569 |
+
gap: 6px;
|
| 570 |
+
color: #e5e7eb;
|
| 571 |
+
}
|
| 572 |
+
|
| 573 |
+
.pulse-dot {
|
| 574 |
+
width: 8px;
|
| 575 |
+
height: 8px;
|
| 576 |
+
border-radius: 999px;
|
| 577 |
+
background: #22c55e;
|
| 578 |
+
box-shadow: 0 0 0 0 rgba(34,197,94,0.7);
|
| 579 |
+
animation: pulse 1.4s infinite;
|
| 580 |
+
}
|
| 581 |
+
|
| 582 |
+
@keyframes pulse {
|
| 583 |
+
0% { box-shadow: 0 0 0 0 rgba(34,197,94,0.7); }
|
| 584 |
+
70% { box-shadow: 0 0 0 10px rgba(34,197,94,0); }
|
| 585 |
+
100% { box-shadow: 0 0 0 0 rgba(34,197,94,0); }
|
| 586 |
+
}
|
| 587 |
+
|
| 588 |
+
.glass-card {
|
| 589 |
+
background: rgba(15,23,42,0.86);
|
| 590 |
+
border-radius: 18px;
|
| 591 |
+
border: 1px solid rgba(148,163,184,0.4);
|
| 592 |
+
box-shadow: 0 18px 40px rgba(15,23,42,0.9);
|
| 593 |
+
padding: 18px;
|
| 594 |
+
backdrop-filter: blur(16px);
|
| 595 |
+
}
|
| 596 |
+
|
| 597 |
+
.glass-card-light {
|
| 598 |
+
background: rgba(15,23,42,0.7);
|
| 599 |
+
border-radius: 18px;
|
| 600 |
+
border: 1px solid rgba(148,163,184,0.3);
|
| 601 |
+
box-shadow: 0 12px 30px rgba(15,23,42,0.9);
|
| 602 |
+
padding: 16px;
|
| 603 |
+
backdrop-filter: blur(12px);
|
| 604 |
+
}
|
| 605 |
+
|
| 606 |
+
.stat-pill {
|
| 607 |
+
padding: 10px 12px;
|
| 608 |
+
border-radius: 14px;
|
| 609 |
+
background: rgba(15,23,42,0.9);
|
| 610 |
+
border: 1px solid rgba(148,163,184,0.5);
|
| 611 |
+
font-size: 0.78rem;
|
| 612 |
+
display: flex;
|
| 613 |
+
flex-direction: column;
|
| 614 |
+
gap: 2px;
|
| 615 |
+
}
|
| 616 |
+
|
| 617 |
+
.stat-pill-label {
|
| 618 |
+
color: #9ca3af;
|
| 619 |
+
text-transform: uppercase;
|
| 620 |
+
font-size: 0.68rem;
|
| 621 |
+
}
|
| 622 |
+
|
| 623 |
+
.stat-pill-value {
|
| 624 |
+
color: #e5e7eb;
|
| 625 |
+
font-weight: 600;
|
| 626 |
+
}
|
| 627 |
+
|
| 628 |
+
.dropzone-image img,
|
| 629 |
+
.output-image img {
|
| 630 |
+
border-radius: 16px !important;
|
| 631 |
+
}
|
| 632 |
+
|
| 633 |
+
footer {
|
| 634 |
+
text-align: center;
|
| 635 |
+
margin-top: 24px;
|
| 636 |
+
color: #9ca3af;
|
| 637 |
+
font-size: 0.78rem;
|
| 638 |
+
}
|
| 639 |
+
"""
|
| 640 |
+
|
| 641 |
+
theme = gr.themes.Soft(
|
| 642 |
+
primary_hue="indigo",
|
| 643 |
+
secondary_hue="pink",
|
| 644 |
+
neutral_hue="slate",
|
| 645 |
+
).set(
|
| 646 |
+
button_primary_background_fill="linear-gradient(135deg,#4f46e5,#ec4899)",
|
| 647 |
+
button_primary_background_fill_hover="linear-gradient(135deg,#6366f1,#f97316)",
|
| 648 |
+
)
|
| 649 |
+
|
| 650 |
+
with gr.Blocks(css=custom_css, theme=theme) as demo:
|
| 651 |
+
# HERO
|
| 652 |
+
gr.HTML(
|
| 653 |
+
f"""
|
| 654 |
+
<div id="hero">
|
| 655 |
+
<div style="display:flex;justify-content:space-between;gap:16px;align-items:flex-start;">
|
| 656 |
+
<div>
|
| 657 |
+
<div class="hero-title">🫁 AST Chest X-Ray Lab</div>
|
| 658 |
+
<div class="hero-subtitle">
|
| 659 |
+
Multi-class chest X-ray analysis with <b>Explainable AI</b> and
|
| 660 |
+
<b>Adaptive Sparse Training</b> – Normal, Tuberculosis, Pneumonia, COVID-19.
|
| 661 |
+
Designed to support clinicians, researchers, and global health teams.
|
| 662 |
+
</div>
|
| 663 |
+
<div class="hero-chip-row">
|
| 664 |
+
<div class="hero-chip">
|
| 665 |
+
<span class="pulse-dot"></span>
|
| 666 |
+
Live Inference (Research Prototype)
|
| 667 |
+
</div>
|
| 668 |
+
<div class="hero-chip">
|
| 669 |
+
EfficientNet-B0 · ~{TOTAL_PARAMS_M:.1f}M parameters
|
| 670 |
+
</div>
|
| 671 |
+
<div class="hero-chip">
|
| 672 |
+
95–97% validation accuracy · ~89% training energy savings
|
| 673 |
+
</div>
|
| 674 |
+
<div class="hero-chip">
|
| 675 |
+
{MODEL_LOAD_INFO}
|
| 676 |
+
</div>
|
| 677 |
+
</div>
|
| 678 |
+
</div>
|
| 679 |
+
<div style="min-width:220px;display:flex;flex-direction:column;gap:8px;">
|
| 680 |
+
<div class="stat-pill">
|
| 681 |
+
<div class="stat-pill-label">Compute</div>
|
| 682 |
+
<div class="stat-pill-value">{device.type.upper()}</div>
|
| 683 |
+
</div>
|
| 684 |
+
<div class="stat-pill">
|
| 685 |
+
<div class="stat-pill-label">Use Case</div>
|
| 686 |
+
<div class="stat-pill-value">Triage & decision support (not diagnostic)</div>
|
| 687 |
+
</div>
|
| 688 |
+
</div>
|
| 689 |
+
</div>
|
| 690 |
+
</div>
|
| 691 |
+
"""
|
| 692 |
+
)
|
| 693 |
+
|
| 694 |
+
gr.Markdown(" ")
|
| 695 |
+
|
| 696 |
+
with gr.Row(equal_height=True):
|
| 697 |
+
# LEFT: INPUT PANEL
|
| 698 |
+
with gr.Column(scale=1, elem_classes="glass-card"):
|
| 699 |
+
gr.Markdown("### 1️⃣ Upload & Configure")
|
| 700 |
+
|
| 701 |
+
image_input = gr.Image(
|
| 702 |
+
type="pil",
|
| 703 |
+
label="Drop a chest X-ray here",
|
| 704 |
+
elem_classes=["dropzone-image"],
|
| 705 |
+
)
|
| 706 |
+
|
| 707 |
+
with gr.Row():
|
| 708 |
+
show_gradcam = gr.Checkbox(
|
| 709 |
+
value=True,
|
| 710 |
+
label="Explainable AI (Grad-CAM)",
|
| 711 |
+
info="Highlight regions that drive the prediction",
|
| 712 |
+
)
|
| 713 |
+
audience_select = gr.Radio(
|
| 714 |
+
["Clinician", "Researcher", "Patient / Public"],
|
| 715 |
+
value="Clinician",
|
| 716 |
+
label="Report Style",
|
| 717 |
+
)
|
| 718 |
+
|
| 719 |
+
with gr.Row():
|
| 720 |
+
analyze_btn = gr.Button("🔬 Analyze X-Ray", variant="primary", scale=3)
|
| 721 |
+
clear_btn = gr.Button("🧹 Reset", variant="secondary")
|
| 722 |
+
|
| 723 |
+
gr.Markdown(
|
| 724 |
+
"""
|
| 725 |
+
**Usage Notes**
|
| 726 |
+
|
| 727 |
+
- Best for frontal (PA/AP) chest X-rays in PNG / JPG format
|
| 728 |
+
- Intended for **triage, education, and research**, not final diagnosis
|
| 729 |
+
- For off-axis, noisy, or portable images, interpret outputs with extra caution
|
| 730 |
+
"""
|
| 731 |
+
)
|
| 732 |
+
|
| 733 |
+
# RIGHT: RESULTS PANEL
|
| 734 |
+
with gr.Column(scale=2, elem_classes="glass-card-light"):
|
| 735 |
+
gr.Markdown("### 2️⃣ AI Dashboard")
|
| 736 |
+
|
| 737 |
+
with gr.Tabs():
|
| 738 |
+
with gr.Tab("Triage Snapshot"):
|
| 739 |
+
snapshot_output = gr.Markdown(
|
| 740 |
+
"No scan analysed yet. Upload an X-ray to get started."
|
| 741 |
+
)
|
| 742 |
+
with gr.Row():
|
| 743 |
+
prob_output = gr.Label(
|
| 744 |
+
label="Prediction Confidence (All Classes)",
|
| 745 |
+
num_top_classes=4,
|
| 746 |
+
)
|
| 747 |
+
prob_chart_output = gr.Image(
|
| 748 |
+
label="Probability Profile",
|
| 749 |
+
elem_classes=["output-image"],
|
| 750 |
+
)
|
| 751 |
+
|
| 752 |
+
with gr.Tab("Visual Explanations"):
|
| 753 |
+
with gr.Row():
|
| 754 |
+
original_output = gr.Image(
|
| 755 |
+
label="Annotated X-ray",
|
| 756 |
+
elem_classes=["output-image"],
|
| 757 |
+
)
|
| 758 |
+
gradcam_output = gr.Image(
|
| 759 |
+
label="Attention Heatmap",
|
| 760 |
+
elem_classes=["output-image"],
|
| 761 |
+
)
|
| 762 |
+
overlay_output = gr.Image(
|
| 763 |
+
label="Explainable Overlay",
|
| 764 |
+
elem_classes=["output-image"],
|
| 765 |
+
)
|
| 766 |
+
|
| 767 |
+
with gr.Tab("Full Report"):
|
| 768 |
+
interpretation_output = gr.Markdown(
|
| 769 |
+
"The full clinical / research report will appear here after inference."
|
| 770 |
+
)
|
| 771 |
+
|
| 772 |
+
with gr.Tab("Model Card"):
|
| 773 |
+
gr.Markdown(
|
| 774 |
+
f"""
|
| 775 |
+
### 🧠 Model Card – AST Chest X-Ray
|
| 776 |
+
|
| 777 |
+
- **Backbone**: EfficientNet-B0
|
| 778 |
+
- **Task**: 4-way classification (Normal, Tuberculosis, Pneumonia, COVID-19)
|
| 779 |
+
- **Optimisation**: Sample-based Adaptive Sparse Training (AST)
|
| 780 |
+
- **Motivation**: Energy-efficient AI for global lung health
|
| 781 |
+
|
| 782 |
+
**Intended Use**
|
| 783 |
+
|
| 784 |
+
- Research and prototyping
|
| 785 |
+
- Triage decision-support in pilot settings
|
| 786 |
+
- Education (medical students, residents, data scientists)
|
| 787 |
+
|
| 788 |
+
**Non-Intended Use**
|
| 789 |
+
|
| 790 |
+
- Stand-alone diagnosis
|
| 791 |
+
- Automated treatment decisions
|
| 792 |
+
- Regulatory-grade clinical deployment
|
| 793 |
+
|
| 794 |
+
> Always pair the model with local guidelines, expert radiology, and laboratory testing.
|
| 795 |
+
"""
|
| 796 |
+
)
|
| 797 |
+
|
| 798 |
+
gr.Markdown("---")
|
| 799 |
+
|
| 800 |
+
gr.HTML(
|
| 801 |
+
"""
|
| 802 |
+
<footer>
|
| 803 |
+
<p>
|
| 804 |
+
<b>AST Chest X-Ray Lab</b> · Normal · TB · Pneumonia · COVID-19 · Explainable AI<br/>
|
| 805 |
+
Built to explore how energy-efficient AI can support clinicians and patients worldwide.
|
| 806 |
+
</p>
|
| 807 |
+
<p style="margin-top:6px;">
|
| 808 |
+
⚠️ <b>MEDICAL DISCLAIMER:</b> This tool is a research prototype and is not FDA-approved,
|
| 809 |
+
CE-marked, or licensed as a medical device. All clinical decisions must be made by
|
| 810 |
+
qualified healthcare professionals.
|
| 811 |
+
</p>
|
| 812 |
+
</footer>
|
| 813 |
+
"""
|
| 814 |
+
)
|
| 815 |
+
|
| 816 |
+
# Wiring – connect logic to UI
|
| 817 |
+
analyze_btn.click(
|
| 818 |
+
fn=predict_chest_xray,
|
| 819 |
+
inputs=[image_input, show_gradcam, audience_select],
|
| 820 |
+
outputs=[
|
| 821 |
+
prob_output,
|
| 822 |
+
original_output,
|
| 823 |
+
gradcam_output,
|
| 824 |
+
overlay_output,
|
| 825 |
+
interpretation_output,
|
| 826 |
+
snapshot_output,
|
| 827 |
+
prob_chart_output,
|
| 828 |
+
],
|
| 829 |
+
)
|
| 830 |
+
|
| 831 |
+
clear_btn.click(
|
| 832 |
+
fn=lambda: (
|
| 833 |
+
{},
|
| 834 |
+
None,
|
| 835 |
+
None,
|
| 836 |
+
None,
|
| 837 |
+
"Awaiting image upload…",
|
| 838 |
+
"Awaiting image upload…",
|
| 839 |
+
None,
|
| 840 |
+
),
|
| 841 |
+
inputs=None,
|
| 842 |
+
outputs=[
|
| 843 |
+
prob_output,
|
| 844 |
+
original_output,
|
| 845 |
+
gradcam_output,
|
| 846 |
+
overlay_output,
|
| 847 |
+
interpretation_output,
|
| 848 |
+
snapshot_output,
|
| 849 |
+
prob_chart_output,
|
| 850 |
+
],
|
| 851 |
+
)
|
| 852 |
+
|
| 853 |
+
# Example X-rays (optional – comment out if these paths don't exist)
|
| 854 |
+
gr.Markdown("### 🔍 Try Example X-rays")
|
| 855 |
+
gr.Examples(
|
| 856 |
+
examples=[
|
| 857 |
+
["examples/normal.png"],
|
| 858 |
+
["examples/tb.png"],
|
| 859 |
+
["examples/pneumonia.png"],
|
| 860 |
+
["examples/covid.png"],
|
| 861 |
+
],
|
| 862 |
+
inputs=image_input,
|
| 863 |
+
)
|
| 864 |
+
|
| 865 |
+
# ============================================================================
|
| 866 |
+
# Launch
|
| 867 |
+
# ============================================================================
|
| 868 |
+
|
| 869 |
+
if __name__ == "__main__":
|
| 870 |
+
demo.launch(
|
| 871 |
+
share=False,
|
| 872 |
+
server_name="0.0.0.0",
|
| 873 |
+
server_port=7860,
|
| 874 |
+
show_error=True,
|
| 875 |
+
)
|