fix library
Browse files
app.py
CHANGED
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@@ -8,18 +8,20 @@ import scanpy as sc
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import argparse
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import subprocess
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from io import BytesIO
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from evaluate import AnndataProcessor
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from accelerate import Accelerator
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from huggingface_hub import hf_hub_download
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def main(input_file_path, species):
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# clone and cd into UCE repo
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##############
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# UCE #
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##############
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# python eval_single_anndata.py --adata_path "./data/10k_pbmcs_proc.h5ad" --dir "./" --model_loc "minwoosun/uce-100m"
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script_name = "/home/user/app/eval_single_anndata.py"
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@@ -81,9 +83,6 @@ def main(input_file_path, species):
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if __name__ == "__main__":
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os.system('git clone https://github.com/minwoosun/UCE.git')
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os.chdir('UCE')
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# Define Gradio inputs and outputs
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file_input = gr.File(label="Upload a .h5ad single cell gene expression file")
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import argparse
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import subprocess
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from io import BytesIO
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from huggingface_hub import hf_hub_download
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def main(input_file_path, species):
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# clone and cd into UCE repo
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os.system('git clone https://github.com/minwoosun/UCE.git')
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os.chdir('UCE')
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##############
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# UCE #
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##############
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from evaluate import AnndataProcessor
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from accelerate import Accelerator
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# python eval_single_anndata.py --adata_path "./data/10k_pbmcs_proc.h5ad" --dir "./" --model_loc "minwoosun/uce-100m"
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script_name = "/home/user/app/eval_single_anndata.py"
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if __name__ == "__main__":
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# Define Gradio inputs and outputs
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file_input = gr.File(label="Upload a .h5ad single cell gene expression file")
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