Create app_.py

app_.py

@@ -0,0 +1,41 @@
+import gradio as gr
+import pandas as pd
+import umap
+import matplotlib.pyplot as plt
+import os
+import tempfile
+import scanpy as sc
+import argparse
+import subprocess
+from io import BytesIO
+from evaluate import AnndataProcessor
+from accelerate import Accelerator
+from huggingface_hub import hf_hub_download
+
+
+def main(input_file_path, species):
+    
+    # clone and cd into UCE repo
+    os.system('git clone https://github.com/minwoosun/UCE.git')
+    os.chdir('UCE')
+
+    #  python eval_single_anndata.py --adata_path "./data/10k_pbmcs_proc.h5ad" --dir "./" --model_loc "minwoosun/uce-100m"
+    script_name = "eval_single_anndata.py"
+    args = ["--adata_path", input_file_path, "--dir", "./", "--model_loc", "minwoosun/uce-100m"]
+    command = ["python", script_name] + args
+    
+    try:
+        result = subprocess.run(command, capture_output=True, text=True, check=True)
+        print(result.stdout)
+        print(result.stderr)
+    except subprocess.CalledProcessError as e:
+        print(f"Error executing command: {e}")
+
+        
+   
+    
+
+if __name__ == "__main__":   
+    
+
+