✓ Initialized. View run at https://modal.com/apps/miyu-wannaone-horiuchi/main/ap-GCiYQgOnZTEaVptGQgPIy0 ✓ Created objects. ├── 🔨 Created mount │ /Users/miyuhoriuchi/microbe-model/scripts/36_extract_marker_sequences.py ├── 🔨 Created mount data/markers/unified/unified_markers.hmm └── 🔨 Created function MarkerSeqExtractor.*. Marker-sequence extract: 45,856 genomes pending (199 cached) max_per_cat=16 [setup] loaded 48 marker HMMs[setup] loaded 48 marker HMMs [setup] loaded 48 marker HMMs [setup] loaded 48 marker HMMs [setup] loaded 48 marker HMMs [setup] loaded 48 marker HMMs [setup] loaded 48 marker HMMs [setup] loaded 48 marker HMMs [setup] loaded 48 marker HMMs [setup] loaded 48 marker HMMs [setup] loaded 48 marker HMMs [setup] loaded 48 marker HMMs [setup] loaded 48 marker HMMs [setup] loaded 48 marker HMMs [setup] loaded 48 marker HMMs [setup] loaded 48 marker HMMs 100 ok / 0 fail 200 ok / 0 fail 300 ok / 3 fail 400 ok / 3 fail 500 ok / 3 fail 600 ok / 3 fail 700 ok / 3 fail 800 ok / 4 fail 900 ok / 4 fail 1,000 ok / 4 fail 1,100 ok / 4 fail 1,200 ok / 6 fail 1,300 ok / 6 fail 1,400 ok / 6 fail 1,500 ok / 220 fail 1,600 ok / 220 fail 1,700 ok / 220 fail 1,800 ok / 220 fail 1,900 ok / 220 fail 2,000 ok / 221 fail 2,100 ok / 221 fail 2,200 ok / 221 fail 2,300 ok / 252 fail 2,400 ok / 253 fail 2,500 ok / 253 fail 2,600 ok / 253 fail 2,700 ok / 253 fail 2,800 ok / 301 fail 2,900 ok / 308 fail 3,000 ok / 308 fail 3,100 ok / 308 fail 3,200 ok / 350 fail 3,300 ok / 360 fail 3,400 ok / 360 fail 3,500 ok / 472 fail 3,600 ok / 472 fail 3,700 ok / 472 fail 3,800 ok / 472 fail 3,900 ok / 472 fail 4,000 ok / 472 fail 4,100 ok / 472 fail 4,200 ok / 472 fail 4,300 ok / 473 fail 4,400 ok / 473 fail 4,500 ok / 473 fail 4,600 ok / 473 fail 4,700 ok / 473 fail 4,800 ok / 473 fail 4,900 ok / 473 fail 5,000 ok / 476 fail 5,100 ok / 476 fail 5,200 ok / 479 fail 5,300 ok / 479 fail 5,400 ok / 479 fail 5,500 ok / 480 fail 5,600 ok / 480 fail 5,700 ok / 480 fail 5,800 ok / 480 fail 5,900 ok / 480 fail 6,000 ok / 480 fail 6,100 ok / 480 fail 6,200 ok / 534 fail 6,300 ok / 534 fail 6,400 ok / 537 fail 6,500 ok / 537 fail 6,600 ok / 539 fail 6,700 ok / 539 fail 6,800 ok / 541 fail 6,900 ok / 554 fail 7,000 ok / 559 fail 7,100 ok / 561 fail 7,200 ok / 593 fail 7,300 ok / 615 fail 7,400 ok / 623 fail 7,500 ok / 633 fail 7,600 ok / 633 fail 7,700 ok / 633 fail 7,800 ok / 633 fail 7,900 ok / 633 fail 8,000 ok / 634 fail 8,100 ok / 636 fail 8,200 ok / 636 fail 8,300 ok / 637 fail 8,400 ok / 637 fail 8,500 ok / 638 fail 8,600 ok / 638 fail 8,700 ok / 638 fail 8,800 ok / 638 fail 8,900 ok / 638 fail 9,000 ok / 640 fail 9,100 ok / 645 fail 9,200 ok / 645 fail 9,300 ok / 645 fail 9,400 ok / 647 fail 9,500 ok / 651 fail 9,600 ok / 652 fail 9,700 ok / 653 fail 9,800 ok / 654 fail 9,900 ok / 657 fail 10,000 ok / 663 fail 10,100 ok / 665 fail 10,200 ok / 674 fail 10,300 ok / 680 fail 10,400 ok / 680 fail 10,500 ok / 688 fail 10,600 ok / 690 fail 10,700 ok / 692 fail 10,800 ok / 695 fail 10,900 ok / 701 fail 11,000 ok / 702 fail 11,100 ok / 712 fail 11,200 ok / 726 fail 11,300 ok / 737 fail 11,400 ok / 771 fail 11,500 ok / 782 fail 11,600 ok / 782 fail 11,700 ok / 783 fail 11,800 ok / 784 fail 11,900 ok / 784 fail 12,000 ok / 789 fail 12,100 ok / 789 fail 12,200 ok / 794 fail 12,300 ok / 794 fail 12,400 ok / 794 fail 12,500 ok / 794 fail 12,600 ok / 794 fail 12,700 ok / 794 fail 12,800 ok / 794 fail 12,900 ok / 794 fail 13,000 ok / 794 fail 13,100 ok / 794 fail 13,200 ok / 815 fail 13,300 ok / 835 fail 13,400 ok / 836 fail 13,500 ok / 840 fail 13,600 ok / 938 fail 13,700 ok / 1,051 fail 13,800 ok / 1,094 fail 13,900 ok / 1,099 fail 14,000 ok / 1,195 fail 14,100 ok / 1,381 fail 14,200 ok / 1,415 fail 14,300 ok / 1,460 fail 14,400 ok / 1,460 fail 14,500 ok / 1,460 fail 14,600 ok / 1,460 fail 14,700 ok / 1,460 fail 14,800 ok / 1,460 fail 14,900 ok / 1,461 fail 15,000 ok / 1,461 fail 15,100 ok / 1,484 fail 15,200 ok / 1,494 fail 15,300 ok / 1,494 fail 15,400 ok / 1,494 fail 15,500 ok / 1,494 fail 15,600 ok / 1,495 fail 15,700 ok / 1,499 fail 15,800 ok / 1,499 fail 15,900 ok / 1,509 fail 16,000 ok / 1,509 fail 16,100 ok / 1,516 fail 16,200 ok / 1,516 fail 16,300 ok / 1,516 fail 16,400 ok / 1,527 fail 16,500 ok / 1,529 fail 16,600 ok / 1,530 fail 16,700 ok / 1,530 fail 16,800 ok / 1,530 fail 16,900 ok / 1,530 fail 17,000 ok / 1,532 fail 17,100 ok / 1,533 fail 17,200 ok / 1,539 fail 17,300 ok / 1,543 fail 17,400 ok / 1,543 fail 17,500 ok / 1,543 fail WARNING: Logs may not be continuous WARNING: Logs may not be continuous 17,600 ok / 1,544 fail 17,700 ok / 1,544 fail 17,800 ok / 1,548 fail WARNING: Logs may not be continuous WARNING: Logs may not be continuous 17,900 ok / 1,548 fail 18,000 ok / 1,551 fail 18,100 ok / 1,552 fail WARNING: Logs may not be continuous WARNING: Logs may not be continuous 18,200 ok / 1,553 fail 18,300 ok / 1,555 fail 18,400 ok / 1,557 fail WARNING: Logs may not be continuous WARNING: Logs may not be continuous 18,500 ok / 1,558 fail 18,600 ok / 1,560 fail 18,700 ok / 1,560 fail WARNING: Logs may not be continuous WARNING: Logs may not be continuous 18,800 ok / 1,560 fail 18,900 ok / 1,560 fail 19,000 ok / 1,560 fail WARNING: Logs may not be continuous WARNING: Logs may not be continuous 19,100 ok / 1,574 fail 19,200 ok / 1,574 fail WARNING: Logs may not be continuous WARNING: Logs may not be continuous 19,300 ok / 1,574 fail 19,400 ok / 1,575 fail 19,500 ok / 1,575 fail 19,600 ok / 1,575 fail WARNING: Logs may not be continuous WARNING: Logs may not be continuous 19,700 ok / 1,575 fail 19,800 ok / 1,606 fail WARNING: Logs may not be continuous WARNING: Logs may not be continuous 19,900 ok / 1,610 fail 20,000 ok / 1,610 fail 20,100 ok / 1,610 fail WARNING: Logs may not be continuous WARNING: Logs may not be continuous 20,200 ok / 1,610 fail 20,300 ok / 1,610 fail 20,400 ok / 1,610 fail WARNING: Logs may not be continuous WARNING: Logs may not be continuous 20,500 ok / 1,610 fail 20,600 ok / 1,610 fail WARNING: Logs may not be continuous WARNING: Logs may not be continuous 20,700 ok / 1,610 fail 20,800 ok / 1,610 fail 20,900 ok / 1,618 fail WARNING: Logs may not be continuous WARNING: Logs may not be continuous [setup] loaded 48 marker HMMs 21,000 ok / 1,618 fail 21,100 ok / 1,621 fail 21,200 ok / 1,621 fail 21,300 ok / 1,621 fail 21,400 ok / 1,621 fail 21,500 ok / 1,621 fail 21,600 ok / 1,622 fail 21,700 ok / 1,623 fail 21,800 ok / 1,623 fail 21,900 ok / 1,623 fail 22,000 ok / 1,623 fail Runner interrupted due to worker preemption. Your Function will be restarted with the same input. For more details, see https://modal.com/docs/guide/preemption [setup] loaded 48 marker HMMs 22,100 ok / 1,625 fail 22,200 ok / 1,628 fail 22,300 ok / 1,629 fail 22,400 ok / 1,629 fail 22,500 ok / 1,629 fail 22,600 ok / 1,631 fail 22,700 ok / 1,631 fail 22,800 ok / 1,631 fail 22,900 ok / 1,631 fail 23,000 ok / 1,631 fail 23,100 ok / 1,640 fail 23,200 ok / 1,640 fail 23,300 ok / 1,642 fail 23,400 ok / 1,643 fail 23,500 ok / 1,643 fail 23,600 ok / 1,643 fail 23,700 ok / 1,643 fail 23,800 ok / 1,643 fail 23,900 ok / 1,643 fail 24,000 ok / 1,651 fail 24,100 ok / 1,651 fail 24,200 ok / 1,669 fail 24,300 ok / 1,669 fail 24,400 ok / 1,669 fail 24,500 ok / 1,669 fail 24,600 ok / 1,669 fail 24,700 ok / 1,670 fail 24,800 ok / 1,672 fail 24,900 ok / 1,680 fail 25,000 ok / 1,681 fail 25,100 ok / 1,681 fail 25,200 ok / 1,682 fail 25,300 ok / 1,682 fail 25,400 ok / 1,682 fail 25,500 ok / 1,682 fail 25,600 ok / 1,682 fail 25,700 ok / 1,684 fail 25,800 ok / 1,687 fail 25,900 ok / 1,688 fail 26,000 ok / 1,688 fail 26,100 ok / 1,688 fail 26,200 ok / 1,688 fail 26,300 ok / 1,688 fail 26,400 ok / 1,689 fail 26,500 ok / 1,689 fail 26,600 ok / 1,689 fail 26,700 ok / 1,689 fail 26,800 ok / 1,689 fail 26,900 ok / 1,691 fail 27,000 ok / 1,691 fail 27,100 ok / 1,691 fail 27,200 ok / 1,691 fail 27,300 ok / 1,694 fail 27,400 ok / 1,694 fail 27,500 ok / 1,694 fail 27,600 ok / 1,694 fail 27,700 ok / 1,694 fail 27,800 ok / 1,694 fail 27,900 ok / 1,694 fail 28,000 ok / 1,694 fail 28,100 ok / 1,703 fail 28,200 ok / 1,703 fail 28,300 ok / 1,708 fail 28,400 ok / 1,714 fail 28,500 ok / 1,714 fail 28,600 ok / 1,716 fail 28,700 ok / 1,740 fail 28,800 ok / 1,740 fail 28,900 ok / 1,740 fail 29,000 ok / 1,740 fail 29,100 ok / 1,740 fail 29,200 ok / 1,740 fail 29,300 ok / 1,743 fail 29,400 ok / 1,743 fail 29,500 ok / 1,743 fail 29,600 ok / 1,743 fail 29,700 ok / 1,777 fail 29,800 ok / 1,845 fail 29,900 ok / 1,845 fail 30,000 ok / 1,845 fail 30,100 ok / 1,852 fail [setup] loaded 48 marker HMMs 30,200 ok / 1,852 fail 30,300 ok / 1,853 fail 30,400 ok / 1,907 fail 30,500 ok / 1,992 fail 30,600 ok / 2,109 fail 30,700 ok / 2,109 fail 30,800 ok / 2,109 fail 30,900 ok / 2,109 fail 31,000 ok / 2,125 fail 31,100 ok / 2,151 fail Runner interrupted due to worker preemption. Your Function will be restarted with the same input. For more details, see https://modal.com/docs/guide/preemption [setup] loaded 48 marker HMMs 31,200 ok / 2,153 fail 31,300 ok / 2,163 fail 31,400 ok / 2,205 fail 31,500 ok / 2,205 fail 31,600 ok / 2,208 fail 31,700 ok / 2,212 fail 31,800 ok / 2,222 fail 31,900 ok / 2,225 fail 32,000 ok / 2,228 fail 32,100 ok / 2,239 fail 32,200 ok / 2,246 fail 32,300 ok / 2,247 fail 32,400 ok / 2,254 fail [setup] loaded 48 marker HMMs 32,500 ok / 2,255 fail 32,600 ok / 2,284 fail 32,700 ok / 2,302 fail 32,800 ok / 2,311 fail 32,900 ok / 2,322 fail 33,000 ok / 2,322 fail 33,100 ok / 2,325 fail 33,200 ok / 2,325 fail 33,300 ok / 2,326 fail 33,400 ok / 2,344 fail 33,500 ok / 2,351 fail 33,600 ok / 2,356 fail 33,700 ok / 2,356 fail 33,800 ok / 2,383 fail 33,900 ok / 2,563 fail 34,000 ok / 2,631 fail 34,100 ok / 2,655 fail 34,200 ok / 3,031 fail 34,300 ok / 3,033 fail 34,400 ok / 3,040 fail 34,500 ok / 3,040 fail 34,600 ok / 3,104 fail 34,700 ok / 3,104 fail 34,800 ok / 3,205 fail 34,900 ok / 3,208 fail 35,000 ok / 3,208 fail 35,100 ok / 3,357 fail 35,200 ok / 3,479 fail 35,300 ok / 3,760 fail 35,400 ok / 3,835 fail 35,500 ok / 3,926 fail 35,600 ok / 3,926 fail 35,700 ok / 3,926 fail 35,800 ok / 3,926 fail 35,900 ok / 3,936 fail 36,000 ok / 3,942 fail 36,100 ok / 3,960 fail [setup] loaded 48 marker HMMs 36,200 ok / 4,223 fail 36,300 ok / 4,223 fail 36,400 ok / 4,223 fail 36,500 ok / 4,226 fail 36,600 ok / 4,226 fail 36,700 ok / 4,268 fail 36,800 ok / 4,269 fail 36,900 ok / 4,347 fail 37,000 ok / 4,442 fail 37,100 ok / 4,442 fail 37,200 ok / 4,485 fail 37,300 ok / 4,485 fail 37,400 ok / 4,499 fail 37,500 ok / 4,538 fail 37,600 ok / 4,563 fail 37,700 ok / 4,980 fail 37,800 ok / 5,300 fail 37,900 ok / 5,300 fail 38,000 ok / 5,304 fail 38,100 ok / 5,304 fail 38,200 ok / 5,316 fail 38,300 ok / 5,316 fail 38,400 ok / 5,472 fail 38,500 ok / 5,473 fail 38,600 ok / 5,474 fail 38,700 ok / 5,540 fail 38,800 ok / 5,540 fail 38,900 ok / 5,540 fail 39,000 ok / 5,585 fail 39,100 ok / 5,585 fail 39,200 ok / 5,585 fail 39,300 ok / 5,585 fail 39,400 ok / 5,585 fail 39,500 ok / 5,585 fail 39,600 ok / 5,585 fail 39,700 ok / 5,585 fail 39,800 ok / 5,585 fail 39,900 ok / 5,586 fail 40,000 ok / 5,586 fail 40,100 ok / 5,586 fail 40,200 ok / 5,586 fail Finished. 40,270 succeeded, 5,586 failed. Streamed to data/marker_sequences.jsonl Stopping app - local entrypoint completed. ✓ App completed. View run at https://modal.com/apps/miyu-wannaone-horiuchi/main/ap-GCiYQgOnZTEaVptGQgPIy0