read 5,000 lines, 3,186 unique genomes
  read 10,000 lines, 6,012 unique genomes
  read 15,000 lines, 8,193 unique genomes
  read 20,000 lines, 9,381 unique genomes
  read 25,000 lines, 11,269 unique genomes
  read 30,000 lines, 13,720 unique genomes
  read 35,000 lines, 15,993 unique genomes
  read 40,000 lines, 18,247 unique genomes
  read 45,000 lines, 19,703 unique genomes
  read 50,000 lines, 21,570 unique genomes
  read 55,000 lines, 22,300 unique genomes
Parsed 55,046 lines → 22,300 unique genomes (83.2s)
Wrote 22,300 rows × 5131 cols → /Users/miyuhoriuchi/microbe-model/data/per_marker_embeddings.parquet (615.9 MB, 170.5s)