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Lung-Cancer-AI-Advisor

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App Files Files Community

moazx commited on Oct 12

Commit

a79df1f

1 Parent(s): dd40ffb

Add application files

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Files changed (16) hide show

.env +0 -1
.env.example +0 -1
Dockerfile +2 -2
api/__pycache__/app.cpython-311.pyc +0 -0
api/__pycache__/app.cpython-313.pyc +0 -0
core/__pycache__/agent.cpython-311.pyc +0 -0
core/__pycache__/background_init.cpython-311.pyc +0 -0
core/__pycache__/config.cpython-311.pyc +0 -0
core/__pycache__/data_loaders.cpython-311.pyc +0 -0
core/__pycache__/github_storage.cpython-311.pyc +0 -0
core/__pycache__/retrievers.cpython-311.pyc +0 -0
core/__pycache__/tools.cpython-311.pyc +0 -0
core/__pycache__/utils.cpython-311.pyc +0 -0
core/__pycache__/validation.cpython-311.pyc +0 -0
logs/app.log +127 -0
vercel.json +0 -14

.env CHANGED Viewed

@@ -1,4 +1,3 @@
-# OpenAI Configuration
 OPENAI_API_KEY=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
 LANGSMITH_API_KEY=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



1	OPENAI_API_KEY=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
2
3	LANGSMITH_API_KEY=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

.env.example CHANGED Viewed

@@ -1,4 +1,3 @@
-# OpenAI Configuration
 OPENAI_API_KEY=
 OPENAI_BASE_URL=



1	OPENAI_API_KEY=
2	OPENAI_BASE_URL=
3

Dockerfile CHANGED Viewed

@@ -41,10 +41,10 @@ RUN chown -R appuser:appuser /app
 USER appuser
 # Expose port
-EXPOSE 8000
 # Set the working directory to the backend folder
 WORKDIR /app
 # Command to run the FastAPI app
-CMD ["sh", "-c", "uvicorn api.app:app --host 0.0.0.0 --port ${PORT:-8000}"]

 USER appuser
 # Expose port
+EXPOSE 7860
 # Set the working directory to the backend folder
 WORKDIR /app
 # Command to run the FastAPI app
+CMD ["sh", "-c", "uvicorn api.app:app --host 0.0.0.0 --port 7860"]

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logs/app.log CHANGED Viewed

@@ -2416,3 +2416,130 @@ Medicatio...
 2025-10-11 11:05:26,633 - AgenticMedicalRAG - INFO - Processing user input (attempt 1): i found that Afinitor has these side effects fever...
 2025-10-11 11:05:32,331 - AgenticMedicalRAG - INFO - Successfully uploaded medical_data/side_effects_reports.csv to GitHub
 2025-10-11 11:05:33,836 - AgenticMedicalRAG - INFO - Successfully processed user input: i found that Afinitor has these side effects fever...

 2025-10-11 11:05:26,633 - AgenticMedicalRAG - INFO - Processing user input (attempt 1): i found that Afinitor has these side effects fever...
 2025-10-11 11:05:32,331 - AgenticMedicalRAG - INFO - Successfully uploaded medical_data/side_effects_reports.csv to GitHub
 2025-10-11 11:05:33,836 - AgenticMedicalRAG - INFO - Successfully processed user input: i found that Afinitor has these side effects fever...
+2025-10-12 16:51:11,994 - AgenticMedicalRAG - INFO - Configuration validation completed
+2025-10-12 16:51:13,986 - AgenticMedicalRAG - INFO - 🚀 Starting background initialization...
+2025-10-12 16:51:13,989 - AgenticMedicalRAG - INFO - 🔄 Background Init: Starting background initialization... (0%)
+2025-10-12 16:51:13,992 - AgenticMedicalRAG - INFO - 🔄 Background Init: Loading embedding model... (10%)
+2025-10-12 16:51:13,992 - AgenticMedicalRAG - INFO - Loading embedding model (first time)...
+2025-10-12 16:51:31,598 - AgenticMedicalRAG - INFO - Embedding model loaded successfully
+2025-10-12 16:51:31,599 - AgenticMedicalRAG - INFO - 🔄 Background Init: Embedding model loaded successfully (40%)
+2025-10-12 16:51:31,599 - AgenticMedicalRAG - INFO - 🔄 Background Init: Initializing retrievers and loading chunks... (50%)
+2025-10-12 16:51:31,599 - AgenticMedicalRAG - INFO - 🔄 Initializing retrievers (first time use)...
+2025-10-12 16:51:31,600 - AgenticMedicalRAG - INFO - 🔄 Processing new data and updating vector store if needed...
+2025-10-12 16:51:31,738 - AgenticMedicalRAG - INFO - 📦 Loading chunks cache for BM25 retriever...
+2025-10-12 16:51:31,757 - AgenticMedicalRAG - INFO - 🔍 Creating vector retriever...
+2025-10-12 16:51:31,757 - AgenticMedicalRAG - INFO - 📝 Creating BM25 retriever...
+2025-10-12 16:51:32,119 - AgenticMedicalRAG - INFO - 🔄 Creating hybrid retriever...
+2025-10-12 16:51:32,120 - AgenticMedicalRAG - INFO - ✅ Retrievers initialized successfully.
+2025-10-12 16:51:32,121 - AgenticMedicalRAG - INFO - 🔄 Background Init: Retrievers initialized successfully (90%)
+2025-10-12 16:51:32,121 - AgenticMedicalRAG - INFO - 🔄 Background Init: Warming up LLM... (95%)
+2025-10-12 16:51:32,121 - AgenticMedicalRAG - INFO - Initializing LLM (first time)...
+2025-10-12 16:51:32,701 - AgenticMedicalRAG - INFO - LLM initialized successfully
+2025-10-12 16:51:32,701 - AgenticMedicalRAG - INFO - 🔄 Background Init: All components initialized successfully (100%)
+2025-10-12 16:51:32,702 - AgenticMedicalRAG - INFO - ✅ Background initialization completed successfully
+2025-10-12 16:53:20,845 - AgenticMedicalRAG - INFO - Processing user input (attempt 1): What is the role of durvalumab in stage III NSCLC ...
+2025-10-12 16:53:30,107 - AgenticMedicalRAG - INFO - Performing automatic validation for streaming response...
+2025-10-12 16:53:30,145 - AgenticMedicalRAG - INFO - Medical answer validator initialized successfully
+2025-10-12 16:53:30,146 - AgenticMedicalRAG - INFO - GitHub storage initialized for MoazEldsouky/cloud-data-store
+2025-10-12 16:53:30,817 - AgenticMedicalRAG - INFO - Starting validation for interaction 11
+2025-10-12 16:53:40,227 - AgenticMedicalRAG - INFO - Assigned unique interaction ID: 11
+2025-10-12 16:53:43,165 - AgenticMedicalRAG - INFO - Successfully uploaded medical_data/evaluation_results.json to GitHub
+2025-10-12 16:53:43,165 - AgenticMedicalRAG - INFO - Evaluation saved to GitHub with ID: 11
+2025-10-12 16:53:54,539 - AgenticMedicalRAG - INFO - Processing user input (attempt 1): What is the role of durvalumab in stage III NSCLC ...
+2025-10-12 16:53:59,171 - AgenticMedicalRAG - INFO - Performing automatic validation for streaming response...
+2025-10-12 16:54:00,252 - AgenticMedicalRAG - INFO - Starting validation for interaction 12
+2025-10-12 16:54:09,155 - AgenticMedicalRAG - INFO - Assigned unique interaction ID: 12
+2025-10-12 16:54:11,255 - AgenticMedicalRAG - INFO - Successfully uploaded medical_data/evaluation_results.json to GitHub
+2025-10-12 16:54:11,256 - AgenticMedicalRAG - INFO - Evaluation saved to GitHub with ID: 12
+2025-10-12 16:59:56,017 - AgenticMedicalRAG - INFO - Configuration validation completed
+2025-10-12 16:59:59,281 - AgenticMedicalRAG - INFO - 🚀 Starting background initialization...
+2025-10-12 16:59:59,283 - AgenticMedicalRAG - INFO - 🔄 Background Init: Starting background initialization... (0%)
+2025-10-12 16:59:59,283 - AgenticMedicalRAG - INFO - 🔄 Background Init: Loading embedding model... (10%)
+2025-10-12 16:59:59,284 - AgenticMedicalRAG - INFO - Loading embedding model (first time)...
+2025-10-12 17:00:08,132 - AgenticMedicalRAG - INFO - Processing user input (attempt 1): What is the role of durvalumab in stage III NSCLC ...
+2025-10-12 17:00:08,151 - AgenticMedicalRAG - INFO - Initializing LLM (first time)...
+2025-10-12 17:00:10,213 - AgenticMedicalRAG - INFO - LLM initialized successfully
+2025-10-12 17:00:12,581 - AgenticMedicalRAG - INFO - 🔄 Initializing retrievers (first time use)...
+2025-10-12 17:00:12,581 - AgenticMedicalRAG - INFO - 🔄 Processing new data and updating vector store if needed...
+2025-10-12 17:00:12,582 - AgenticMedicalRAG - INFO - Loading embedding model (first time)...
+2025-10-12 17:00:17,768 - AgenticMedicalRAG - INFO - Embedding model loaded successfully
+2025-10-12 17:00:17,768 - AgenticMedicalRAG - INFO - 🔄 Background Init: Embedding model loaded successfully (40%)
+2025-10-12 17:00:17,769 - AgenticMedicalRAG - INFO - 🔄 Background Init: Initializing retrievers and loading chunks... (50%)
+2025-10-12 17:00:17,769 - AgenticMedicalRAG - INFO - 🔄 Initializing retrievers (first time use)...
+2025-10-12 17:00:17,769 - AgenticMedicalRAG - INFO - 🔄 Processing new data and updating vector store if needed...
+2025-10-12 17:00:18,210 - AgenticMedicalRAG - INFO - 📦 Loading chunks cache for BM25 retriever...
+2025-10-12 17:00:18,229 - AgenticMedicalRAG - INFO - 🔍 Creating vector retriever...
+2025-10-12 17:00:18,229 - AgenticMedicalRAG - INFO - 📝 Creating BM25 retriever...
+2025-10-12 17:00:18,587 - AgenticMedicalRAG - INFO - 🔄 Creating hybrid retriever...
+2025-10-12 17:00:18,588 - AgenticMedicalRAG - INFO - ✅ Retrievers initialized successfully.
+2025-10-12 17:00:18,588 - AgenticMedicalRAG - INFO - 🔄 Background Init: Retrievers initialized successfully (90%)
+2025-10-12 17:00:18,589 - AgenticMedicalRAG - INFO - 🔄 Background Init: Warming up LLM... (95%)
+2025-10-12 17:00:18,589 - AgenticMedicalRAG - INFO - 🔄 Background Init: All components initialized successfully (100%)
+2025-10-12 17:00:18,589 - AgenticMedicalRAG - INFO - ✅ Background initialization completed successfully
+2025-10-12 17:00:18,785 - AgenticMedicalRAG - INFO - Embedding model loaded successfully
+2025-10-12 17:00:18,818 - AgenticMedicalRAG - INFO - 📦 Loading chunks cache for BM25 retriever...
+2025-10-12 17:00:19,183 - AgenticMedicalRAG - INFO - 🔍 Creating vector retriever...
+2025-10-12 17:00:19,184 - AgenticMedicalRAG - INFO - 📝 Creating BM25 retriever...
+2025-10-12 17:00:19,534 - AgenticMedicalRAG - INFO - 🔄 Creating hybrid retriever...
+2025-10-12 17:00:19,549 - AgenticMedicalRAG - INFO - ✅ Retrievers initialized successfully.
+2025-10-12 17:00:24,816 - AgenticMedicalRAG - INFO - Performing automatic validation for streaming response...
+2025-10-12 17:00:25,647 - AgenticMedicalRAG - INFO - Medical answer validator initialized successfully
+2025-10-12 17:00:25,648 - AgenticMedicalRAG - INFO - GitHub storage initialized for MoazEldsouky/cloud-data-store
+2025-10-12 17:00:26,758 - AgenticMedicalRAG - INFO - Starting validation for interaction 13
+2025-10-12 17:00:38,031 - AgenticMedicalRAG - INFO - Assigned unique interaction ID: 13
+2025-10-12 17:00:40,639 - AgenticMedicalRAG - INFO - Successfully uploaded medical_data/evaluation_results.json to GitHub
+2025-10-12 17:00:40,640 - AgenticMedicalRAG - INFO - Evaluation saved to GitHub with ID: 13
+2025-10-12 17:00:47,737 - AgenticMedicalRAG - INFO - Successfully processed user input: What is the role of durvalumab in stage III NSCLC ...
+2025-10-12 17:03:03,936 - AgenticMedicalRAG - INFO - Processing user input (attempt 1): What is the role of durvalumab in stage III NSCLC ...
+2025-10-12 17:03:10,328 - AgenticMedicalRAG - INFO - Performing automatic validation for streaming response...
+2025-10-12 17:03:11,449 - AgenticMedicalRAG - INFO - Starting validation for interaction 14
+2025-10-12 17:03:16,686 - AgenticMedicalRAG - INFO - Assigned unique interaction ID: 14
+2025-10-12 17:03:19,407 - AgenticMedicalRAG - INFO - Successfully uploaded medical_data/evaluation_results.json to GitHub
+2025-10-12 17:03:19,408 - AgenticMedicalRAG - INFO - Evaluation saved to GitHub with ID: 14
+2025-10-12 17:03:26,937 - AgenticMedicalRAG - INFO - Successfully processed user input: What is the role of durvalumab in stage III NSCLC ...
+2025-10-12 17:24:02,291 - AgenticMedicalRAG - INFO - Configuration validation completed
+2025-10-12 17:24:03,301 - AgenticMedicalRAG - INFO - 🚀 Starting background initialization...
+2025-10-12 17:24:03,302 - AgenticMedicalRAG - INFO - 🔄 Background Init: Starting background initialization... (0%)
+2025-10-12 17:24:03,302 - AgenticMedicalRAG - INFO - 🔄 Background Init: Loading embedding model... (10%)
+2025-10-12 17:24:03,303 - AgenticMedicalRAG - INFO - Loading embedding model (first time)...
+2025-10-12 17:24:10,746 - AgenticMedicalRAG - INFO - Embedding model loaded successfully
+2025-10-12 17:24:10,747 - AgenticMedicalRAG - INFO - 🔄 Background Init: Embedding model loaded successfully (40%)
+2025-10-12 17:24:10,747 - AgenticMedicalRAG - INFO - 🔄 Background Init: Initializing retrievers and loading chunks... (50%)
+2025-10-12 17:24:10,747 - AgenticMedicalRAG - INFO - 🔄 Initializing retrievers (first time use)...
+2025-10-12 17:24:10,747 - AgenticMedicalRAG - INFO - 🔄 Processing new data and updating vector store if needed...
+2025-10-12 17:24:10,869 - AgenticMedicalRAG - INFO - 📦 Loading chunks cache for BM25 retriever...
+2025-10-12 17:24:10,890 - AgenticMedicalRAG - INFO - 🔍 Creating vector retriever...
+2025-10-12 17:24:10,890 - AgenticMedicalRAG - INFO - 📝 Creating BM25 retriever...
+2025-10-12 17:24:11,161 - AgenticMedicalRAG - INFO - 🔄 Creating hybrid retriever...
+2025-10-12 17:24:11,161 - AgenticMedicalRAG - INFO - ✅ Retrievers initialized successfully.
+2025-10-12 17:24:11,161 - AgenticMedicalRAG - INFO - 🔄 Background Init: Retrievers initialized successfully (90%)
+2025-10-12 17:24:11,162 - AgenticMedicalRAG - INFO - 🔄 Background Init: Warming up LLM... (95%)
+2025-10-12 17:24:11,162 - AgenticMedicalRAG - INFO - Initializing LLM (first time)...
+2025-10-12 17:24:12,040 - AgenticMedicalRAG - INFO - LLM initialized successfully
+2025-10-12 17:24:12,041 - AgenticMedicalRAG - INFO - 🔄 Background Init: All components initialized successfully (100%)
+2025-10-12 17:24:12,041 - AgenticMedicalRAG - INFO - ✅ Background initialization completed successfully
+2025-10-12 17:24:55,855 - AgenticMedicalRAG - INFO - Processing user input (attempt 1): i found that Afinitor has these side effects fever...
+2025-10-12 17:24:57,314 - AgenticMedicalRAG - INFO - GitHub storage initialized for MoazEldsouky/cloud-data-store
+2025-10-12 17:24:58,667 - AgenticMedicalRAG - INFO - Successfully uploaded medical_data/side_effects_reports.csv to GitHub
+2025-10-12 17:24:59,974 - AgenticMedicalRAG - INFO - Successfully processed user input: i found that Afinitor has these side effects fever...
+2025-10-12 21:21:39,520 - AgenticMedicalRAG - INFO - Configuration validation completed
+2025-10-12 21:21:40,685 - AgenticMedicalRAG - INFO - 🚀 Starting background initialization...
+2025-10-12 21:21:40,686 - AgenticMedicalRAG - INFO - 🔄 Background Init: Starting background initialization... (0%)
+2025-10-12 21:21:40,687 - AgenticMedicalRAG - INFO - 🔄 Background Init: Loading embedding model... (10%)
+2025-10-12 21:21:40,688 - AgenticMedicalRAG - INFO - Loading embedding model (first time)...
+2025-10-12 21:21:49,755 - AgenticMedicalRAG - INFO - Embedding model loaded successfully
+2025-10-12 21:21:49,756 - AgenticMedicalRAG - INFO - 🔄 Background Init: Embedding model loaded successfully (40%)
+2025-10-12 21:21:49,756 - AgenticMedicalRAG - INFO - 🔄 Background Init: Initializing retrievers and loading chunks... (50%)
+2025-10-12 21:21:49,756 - AgenticMedicalRAG - INFO - 🔄 Initializing retrievers (first time use)...
+2025-10-12 21:21:49,757 - AgenticMedicalRAG - INFO - 🔄 Processing new data and updating vector store if needed...
+2025-10-12 21:21:49,920 - AgenticMedicalRAG - INFO - 📦 Loading chunks cache for BM25 retriever...
+2025-10-12 21:21:49,972 - AgenticMedicalRAG - INFO - 🔍 Creating vector retriever...
+2025-10-12 21:21:49,973 - AgenticMedicalRAG - INFO - 📝 Creating BM25 retriever...
+2025-10-12 21:21:50,411 - AgenticMedicalRAG - INFO - 🔄 Creating hybrid retriever...
+2025-10-12 21:21:50,411 - AgenticMedicalRAG - INFO - ✅ Retrievers initialized successfully.
+2025-10-12 21:21:50,411 - AgenticMedicalRAG - INFO - 🔄 Background Init: Retrievers initialized successfully (90%)
+2025-10-12 21:21:50,412 - AgenticMedicalRAG - INFO - 🔄 Background Init: Warming up LLM... (95%)
+2025-10-12 21:21:50,412 - AgenticMedicalRAG - INFO - Initializing LLM (first time)...
+2025-10-12 21:21:51,729 - AgenticMedicalRAG - INFO - LLM initialized successfully
+2025-10-12 21:21:51,730 - AgenticMedicalRAG - INFO - 🔄 Background Init: All components initialized successfully (100%)
+2025-10-12 21:21:51,730 - AgenticMedicalRAG - INFO - ✅ Background initialization completed successfully

vercel.json DELETED Viewed

@@ -1,14 +0,0 @@
-{
-  "builds": [
-    {
-      "src": "start_api.py",
-      "use": "@vercel/python"
-    }
-  ],
-  "routes": [
-    {
-      "src": "/(.*)",
-      "dest": "start_api.py"
-    }
-  ]
-}