# Import required libraries import pandas as pd from pathlib import Path from typing import List from langchain.schema import Document from .config import logger from langchain_pymupdf4llm import PyMuPDF4LLMLoader from langchain_community.document_loaders.parsers import TesseractBlobParser def load_pdf_documents(pdf_path: Path) -> List[Document]: """ Load and process PDF documents from medical guidelines using PyMuPDF4LLMLoader. Uses Tesseract for image extraction and optimized table extraction for medical documents. Extracts disease and provider from directory structure. Directory structure expected: Data/Disease Name/Provider Name/file.pdf Args: pdf_path: Path to the PDF file Returns: List of Document objects """ try: # Validate file exists if not pdf_path.exists(): raise FileNotFoundError(f"PDF file not found at {pdf_path}") # Extract disease and provider from directory structure path_parts = pdf_path.parts disease = "unknown" provider = "unknown" if len(path_parts) >= 3: # Get disease (parent's parent directory) disease = path_parts[-3] if path_parts[-3].lower() != "data" else path_parts[-2] # Get provider (parent directory) provider = path_parts[-2] # Initialize PyMuPDF4LLMLoader loader = PyMuPDF4LLMLoader( str(pdf_path), mode="page", extract_images=True, images_parser=TesseractBlobParser(), table_strategy="lines" ) raw_documents = loader.load() documents = [] for idx, doc in enumerate(raw_documents): if doc.page_content.strip(): # Extract actual page number from metadata, default to sequential numbering # PyMuPDF4LLMLoader uses 0-indexed pages, so we add 1 for human-readable page numbers actual_page = doc.metadata.get("page") if actual_page is not None: # If page is 0-indexed, add 1 to make it 1-indexed page_num = actual_page + 1 if actual_page == idx else actual_page else: # Fallback to 1-indexed sequential numbering page_num = idx + 1 processed_doc = Document( page_content=doc.page_content, metadata={ "source": pdf_path.stem, "disease": disease, "provider": provider, "page_number": page_num } ) documents.append(processed_doc) logger.info(f"Loaded {len(documents)} document pages from PDF - Disease: {disease}, Provider: {provider}") return documents except Exception as e: logger.error(f"Error loading PDF documents: {str(e)}") raise def load_markdown_documents(md_path: Path) -> List[Document]: """ Load and process Markdown medical guidelines. Extracts disease and provider from directory structure. Directory structure expected: Data/Disease Name/Provider Name/file.md Args: md_path: Path to the Markdown file Returns: List of Document objects (single document split by sections if needed) """ try: # Validate file exists if not md_path.exists(): raise FileNotFoundError(f"Markdown file not found at {md_path}") # Extract disease and provider from directory structure path_parts = md_path.parts disease = "unknown" provider = "unknown" if len(path_parts) >= 3: # Get disease (parent's parent directory) disease = path_parts[-3] if path_parts[-3].lower() != "data" else path_parts[-2] # Get provider (parent directory) provider = path_parts[-2] # Read markdown content with open(md_path, 'r', encoding='utf-8') as f: content = f.read() # Create document with minimal metadata for RAG doc = Document( page_content=content, metadata={ "source": md_path.stem, "disease": disease, "provider": provider, "page_number": 1 } ) logger.info(f"Loaded Markdown document - Disease: {disease}, Provider: {provider}") return [doc] except Exception as e: logger.error(f"Error loading Markdown document: {str(e)}") raise