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Running
| title: Splice Site | |
| emoji: 🧬 | |
| colorFrom: green | |
| colorTo: purple | |
| sdk: gradio | |
| sdk_version: 6.14.0 | |
| python_version: "3.13" | |
| app_file: app.py | |
| pinned: false | |
| license: agpl-3.0 | |
| suggested_hardware: t4-small | |
| models: | |
| - multimolecule/openspliceai-mane-400nt | |
| - multimolecule/pangolin | |
| - multimolecule/sptransformer | |
| - multimolecule/maxentscan-score5 | |
| - multimolecule/maxentscan-score3 | |
| tags: | |
| - biology | |
| - dna | |
| - splicing | |
| - splice-site | |
| - multimolecule | |
| Interactive splice-site scoring with MultiMolecule. | |
| Enter one DNA sequence or upload a single-record FASTA file, choose a splice-site checkpoint, and inspect ranked splice-site calls, per-position scores, run metadata, and a Matplotlib score track. Results can be downloaded as per-position CSV or normalized JSON with `splice_sites`, `scores`, `channels`, and `sequence` keys. | |
| The OpenSpliceAI, Pangolin, and SpTransformer options run full-sequence `splice-site` pipelines. The MaxEntScan option uses the same pipeline interface over sliding donor (`score5`) and acceptor (`score3`) motif windows because MaxEntScan is a fixed-window splice-signal scorer rather than a full-length neural sequence model. | |