Add semantic scholar functionality and fix html
Browse files
app.py
CHANGED
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@@ -109,6 +109,45 @@ def extract_pdf_text_and_guess_meta(file_storage):
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except Exception as e:
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return {}, "", [f"Failed to parse PDF: {e}"]
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def score_currency(year: Optional[int]):
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if not year:
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return 2, "Publication year unknown.", ["Could not find a clear date; treat with caution."]
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@@ -184,46 +223,243 @@ def aggregate_scores(meta: Dict[str,Any], text: str, assignment_context: str, pr
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verdict = "use" if avg >= 4.0 else ("use with caution" if avg >= 2.5 else "avoid")
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return {"metadata": meta, "craap": craap, "overall": {"average": avg, "verdict": verdict}}
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INDEX_HTML = """
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<!doctype html>
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<
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"""
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@app.route("/", methods=["GET"])
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@@ -246,6 +482,10 @@ def analyze():
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else:
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return redirect(url_for("index"))
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result = aggregate_scores(meta, text, assignment_context, provisional or bool(warnings))
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if not text:
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warnings.append("Full text not available β Accuracy/Purpose are provisional. Provide a DOI/URL or full PDF for deeper evaluation.")
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return render_template_string(INDEX_HTML, result=result, warnings=warnings)
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@@ -262,6 +502,10 @@ def api_analyze():
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else:
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return jsonify({"error":"Provide paper_source (URL/DOI) or use /analyze form for PDF upload"}), 400
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result = aggregate_scores(meta, text, assignment_context, provisional or bool(warnings))
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return jsonify({"result": result, "warnings": warnings})
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if __name__ == "__main__":
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except Exception as e:
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return {}, "", [f"Failed to parse PDF: {e}"]
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+
def fetch_semantic_scholar(doi: str):
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"""Fetch enrichment from Semantic Scholar Graph API by DOI."""
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if not doi:
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return {}, ["No DOI provided"]
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base = f"https://api.semanticscholar.org/graph/v1/paper/DOI:{requests.utils.quote(doi)}"
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fields = ",".join([
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"title","year","publicationDate","journal","url",
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"isOpenAccess","openAccessPdf","citationCount","influentialCitationCount",
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"authors.name","fieldsOfStudy","publicationTypes"
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])
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headers = {"User-Agent":"CRAAPBot/1.1"}
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if S2_API_KEY:
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headers["x-api-key"] = S2_API_KEY
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try:
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r = requests.get(base, params={"fields":fields}, headers=headers, timeout=12)
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if r.status_code == 404:
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return {}, []
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r.raise_for_status()
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p = r.json()
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enrich = {
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"s2": {
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"title": p.get("title"),
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"year": p.get("year"),
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"publicationDate": p.get("publicationDate"),
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"journal": (p.get("journal") or {}).get("name"),
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"url": p.get("url"),
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"isOpenAccess": p.get("isOpenAccess"),
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"openAccessPdf": (p.get("openAccessPdf") or {}).get("url"),
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"citationCount": p.get("citationCount"),
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"influentialCitationCount": p.get("influentialCitationCount"),
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"authors": [a.get("name") for a in (p.get("authors") or []) if a.get("name")],
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"fieldsOfStudy": p.get("fieldsOfStudy"),
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"publicationTypes": p.get("publicationTypes"),
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}
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}
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return enrich, []
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except Exception as e:
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return {}, [f"Semantic Scholar lookup failed: {e}"]
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+
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def score_currency(year: Optional[int]):
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if not year:
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return 2, "Publication year unknown.", ["Could not find a clear date; treat with caution."]
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verdict = "use" if avg >= 4.0 else ("use with caution" if avg >= 2.5 else "avoid")
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return {"metadata": meta, "craap": craap, "overall": {"average": avg, "verdict": verdict}}
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+
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INDEX_HTML = """
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<!doctype html>
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<html lang="en">
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<head>
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<meta charset="utf-8"/>
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<title>CRAAP Bot Β· Flask</title>
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<meta name="viewport" content="width=device-width, initial-scale=1">
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<style>
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:root{
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--bg:#f8fafc;
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--card:#ffffff;
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--ink:#0f172a;
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--muted:#64748b;
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--line:#e2e8f0;
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--brand:#111827;
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--accent:#2563eb;
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--warn-bg:#fff7ed;
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--warn-line:#fed7aa;
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--code-bg:#0b1020;
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--code-ink:#d7e7ff;
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--ring:#93c5fd;
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--shadow:0 1px 2px rgba(0,0,0,.05), 0 10px 16px rgba(2,6,23,.04);
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}
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@media (prefers-color-scheme: dark){
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:root{
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--bg:#0b1220;
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--card:#0f172a;
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--ink:#e5e7eb;
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--muted:#94a3b8;
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--line:#1f2a44;
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--brand:#e5e7eb;
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--accent:#60a5fa;
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--warn-bg:#2b1f12;
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--warn-line:#9a5a25;
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--code-bg:#030712;
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--code-ink:#d7e7ff;
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--ring:#2563eb;
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--shadow:0 1px 2px rgba(0,0,0,.4), 0 12px 20px rgba(0,0,0,.35);
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}
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}
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*{box-sizing:border-box}
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html,body{height:100%}
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body{
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margin:0;
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background:var(--bg);
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color:var(--ink);
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font:16px/1.55 system-ui, -apple-system, Segoe UI, Roboto, Helvetica, Arial, Apple Color Emoji, Segoe UI Emoji, Noto Color Emoji, sans-serif;
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}
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.wrap{max-width:980px;margin:2.2rem auto;padding:0 1rem}
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header{
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padding:1.25rem 1rem 1rem;
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border-radius:16px;
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background:linear-gradient(135deg, rgba(37,99,235,.10), rgba(2,6,23,.03));
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border:1px solid var(--line);
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box-shadow:var(--shadow);
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}
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header h1{margin:0 0 .35rem;font-weight:800;letter-spacing:.2px}
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header p{margin:.25rem 0 0;color:var(--muted)}
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.tag{
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display:inline-flex;align-items:center;gap:.4rem;
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padding:.2rem .6rem;margin-top:.5rem;margin-right:.5rem;
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border:1px solid var(--line);border-radius:999px;color:var(--muted);font-size:.85rem
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}
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.card{
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background:var(--card);border:1px solid var(--line);border-radius:16px;
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padding:1.1rem 1.2rem;margin:1rem 0;box-shadow:var(--shadow)
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}
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label{display:block;font-weight:650;margin:.65rem 0 .35rem}
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input[type="text"], input[type="file"]{
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width:100%;padding:.7rem .8rem;border:1px solid var(--line);border-radius:12px;background:transparent;color:var(--ink);
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outline:none;transition:border .15s, box-shadow .15s
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}
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input[type="text"]:focus, input[type="file"]:focus{
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border-color:var(--accent); box-shadow:0 0 0 3px color-mix(in srgb, var(--ring) 35%, transparent);
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}
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.btn{
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display:inline-block; background:var(--brand); color:#fff; text-decoration:none;
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border:0; padding:.6rem .9rem; border-radius:10px; cursor:pointer;
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transition:transform .06s ease, opacity .15s ease;
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margin:.25rem .35rem .25rem 0; font-weight:600; font-size:.95rem
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}
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.btn:hover{opacity:.92; transform:translateY(-1px)}
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.btn:focus{outline:3px solid color-mix(in srgb, var(--ring) 45%, transparent); outline-offset:2px}
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.btn--ghost{
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background:transparent;color:var(--ink);border:1px solid var(--line)
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}
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.muted{color:var(--muted)}
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.warn{padding:.7rem .9rem;background:var(--warn-bg);border:1px solid var(--warn-line);border-radius:12px;margin:.8rem 0}
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ul{padding-left:1.2rem;margin:.6rem 0}
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li{margin:.25rem 0}
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pre{
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background:var(--code-bg);color:var(--code-ink);
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padding:1rem;border-radius:12px;overflow:auto;border:1px solid #0b1220;
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}
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details summary{cursor:pointer; list-style:none}
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details summary::marker, details summary::-webkit-details-marker{display:none}
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details summary{display:flex; align-items:center; gap:.5rem; font-weight:700}
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details[open] summary{opacity:.85}
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.grid{
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display:grid; gap:1rem;
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grid-template-columns:1fr;
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}
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@media (min-width:860px){
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.grid{grid-template-columns:1fr 1fr}
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}
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.meta{display:flex; flex-wrap:wrap; gap:.4rem .6rem; align-items:center}
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.pill{
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display:inline-flex; align-items:center; gap:.4rem;
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border:1px solid var(--line); border-radius:999px; padding:.15rem .55rem; color:var(--muted); font-size:.85rem
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}
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</style>
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</head>
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<body>
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<div class="wrap">
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<header>
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<h1>CRAAP Bot</h1>
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<p class="muted">URL/DOI or PDF β quick quality check for scholarly sources</p>
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<span class="tag">By: NADYA W</span>
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<span class="tag">Flask</span>
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</header>
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+
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<div class="card">
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<form method="POST" action="{{ url_for('analyze') }}" enctype="multipart/form-data">
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<label for="paper_source">URL or DOI</label>
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<input id="paper_source" type="text" name="paper_source" placeholder="https://doi.org/10.xxxx/..."/>
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<label for="pdf">Or upload PDF</label>
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<input id="pdf" type="file" name="pdf" accept="application/pdf"/>
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<label for="assignment_context">Assignment context (optional)</label>
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<input id="assignment_context" type="text" name="assignment_context" placeholder="e.g., AI for zoonotic disease 2023β2025"/>
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<div style="margin-top:.9rem">
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<button class="btn" type="submit">Analyze</button>
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<a class="btn btn--ghost" href="{{ url_for('index') }}">Reset</a>
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</div>
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<p class="muted" style="margin:.6rem 0 0">Tip: DOI or full PDF gives best results. Partial PDFs limit Accuracy/Purpose.</p>
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</form>
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</div>
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+
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+
{% if result %}
|
| 382 |
+
{% if warnings %}
|
| 383 |
+
<div class="warn">β οΈ {{ warnings|join(' Β· ') }}</div>
|
| 384 |
+
{% endif %}
|
| 385 |
+
|
| 386 |
+
<div class="card">
|
| 387 |
+
<h2 style="margin-top:0">CRAAP Evaluation Summary</h2>
|
| 388 |
+
|
| 389 |
+
<p style="margin:.25rem 0 0"><strong>{{ result.metadata.title or '[unknown title]' }}</strong></p>
|
| 390 |
+
<p class="muted" style="margin:.25rem 0 .75rem">
|
| 391 |
+
{{ (result.metadata.authors or [])|join(', ') }} Β· {{ result.metadata.venue or 'unknown venue' }}{% if result.metadata.year %} Β· {{ result.metadata.year }}{% endif %}
|
| 392 |
+
</p>
|
| 393 |
+
|
| 394 |
+
{% set s2 = result.enrichment.s2 if result.enrichment else None %}
|
| 395 |
+
{% set doi = result.metadata.identifier.doi if result.metadata and result.metadata.identifier else None %}
|
| 396 |
+
{% set src_url = result.metadata.identifier.url if result.metadata and result.metadata.identifier else None %}
|
| 397 |
+
|
| 398 |
+
<p>
|
| 399 |
+
{% if doi %}
|
| 400 |
+
<a class="btn" href="https://doi.org/{{ doi }}" target="_blank" rel="noopener">Open DOI</a>
|
| 401 |
+
{% elif src_url %}
|
| 402 |
+
<a class="btn" href="{{ src_url }}" target="_blank" rel="noopener">Open Source</a>
|
| 403 |
+
{% endif %}
|
| 404 |
+
|
| 405 |
+
{% if s2 and s2.url %}
|
| 406 |
+
<a class="btn" href="{{ s2.url }}" target="_blank" rel="noopener">Semantic Scholar</a>
|
| 407 |
+
{% endif %}
|
| 408 |
+
|
| 409 |
+
{% if s2 and s2.openAccessPdf %}
|
| 410 |
+
<a class="btn" href="{{ s2.openAccessPdf }}" target="_blank" rel="noopener">Open Access PDF</a>
|
| 411 |
+
{% endif %}
|
| 412 |
+
|
| 413 |
+
<a class="btn btn--ghost" href="https://scholar.google.com/scholar?q={{ (result.metadata.title or doi or '')|urlencode }}" target="_blank" rel="noopener">Google Scholar</a>
|
| 414 |
+
</p>
|
| 415 |
+
|
| 416 |
+
{% if s2 %}
|
| 417 |
+
<div class="meta" style="margin:.25rem 0 .75rem">
|
| 418 |
+
{% if s2.journal %}<span class="pill">π {{ s2.journal }}</span>{% endif %}
|
| 419 |
+
{% if s2.publicationDate %}<span class="pill">π {{ s2.publicationDate }}</span>{% endif %}
|
| 420 |
+
<span class="pill">π Citations: {{ s2.citationCount if s2.citationCount is not none else "?" }}</span>
|
| 421 |
+
{% if s2.influentialCitationCount is not none %}<span class="pill">β Influential: {{ s2.influentialCitationCount }}</span>{% endif %}
|
| 422 |
+
{% if s2.isOpenAccess %}<span class="pill">π’ Open Access</span>{% endif %}
|
| 423 |
+
{% if s2.publicationTypes %}<span class="pill">π§ {{ s2.publicationTypes|join(', ') }}</span>{% endif %}
|
| 424 |
+
</div>
|
| 425 |
+
{% endif %}
|
| 426 |
+
|
| 427 |
+
<div class="grid">
|
| 428 |
+
<div class="card" style="margin:0">
|
| 429 |
+
<h3 style="margin-top:0">Scores</h3>
|
| 430 |
+
<ul>
|
| 431 |
+
<li><strong>Currency</strong>: {{ result.craap.Currency.score }}/5 β {{ result.craap.Currency.evidence }}</li>
|
| 432 |
+
<li><strong>Relevance</strong>: {{ result.craap.Relevance.score }}/5 β {{ result.craap.Relevance.evidence }}</li>
|
| 433 |
+
<li><strong>Authority</strong>: {{ result.craap.Authority.score }}/5 β {{ result.craap.Authority.evidence }}</li>
|
| 434 |
+
<li><strong>Accuracy</strong>: {{ result.craap.Accuracy.score }}/5 β {{ result.craap.Accuracy.evidence }}</li>
|
| 435 |
+
<li><strong>Purpose</strong>: {{ result.craap.Purpose.score }}/5 β {{ result.craap.Purpose.evidence }}</li>
|
| 436 |
+
</ul>
|
| 437 |
+
<p><strong>Overall:</strong> {{ result.overall.average }} β <em>{{ result.overall.verdict }}</em></p>
|
| 438 |
+
</div>
|
| 439 |
+
|
| 440 |
+
<div class="card" style="margin:0">
|
| 441 |
+
<h3 style="margin-top:0">What to verify next</h3>
|
| 442 |
+
<ol>
|
| 443 |
+
<li>Confirm publication date & peer-review at the DOI/URL.</li>
|
| 444 |
+
<li>Skim methods/results for sample size, validation, limitations.</li>
|
| 445 |
+
<li>Check author affiliations and profiles (Semantic Scholar/ORCID).</li>
|
| 446 |
+
<li>Look for funding/conflict-of-interest statements.</li>
|
| 447 |
+
<li>Search for newer papers (last 1β2 years) that cite or challenge it.</li>
|
| 448 |
+
</ol>
|
| 449 |
+
</div>
|
| 450 |
+
</div>
|
| 451 |
+
</div>
|
| 452 |
+
|
| 453 |
+
<div class="card">
|
| 454 |
+
<details>
|
| 455 |
+
<summary>View raw JSON</summary>
|
| 456 |
+
<pre>{{ result | tojson(indent=2) }}</pre>
|
| 457 |
+
</details>
|
| 458 |
+
</div>
|
| 459 |
+
{% endif %}
|
| 460 |
+
</div>
|
| 461 |
+
</body>
|
| 462 |
+
</html>
|
| 463 |
"""
|
| 464 |
|
| 465 |
@app.route("/", methods=["GET"])
|
|
|
|
| 482 |
else:
|
| 483 |
return redirect(url_for("index"))
|
| 484 |
result = aggregate_scores(meta, text, assignment_context, provisional or bool(warnings))
|
| 485 |
+
doi = (meta.get("identifier") or {}).get("doi")
|
| 486 |
+
enrichment, ewarns = fetch_semantic_scholar(doi)
|
| 487 |
+
result["enrichment"] = enrichment
|
| 488 |
+
warnings.extend(ewarns)
|
| 489 |
if not text:
|
| 490 |
warnings.append("Full text not available β Accuracy/Purpose are provisional. Provide a DOI/URL or full PDF for deeper evaluation.")
|
| 491 |
return render_template_string(INDEX_HTML, result=result, warnings=warnings)
|
|
|
|
| 502 |
else:
|
| 503 |
return jsonify({"error":"Provide paper_source (URL/DOI) or use /analyze form for PDF upload"}), 400
|
| 504 |
result = aggregate_scores(meta, text, assignment_context, provisional or bool(warnings))
|
| 505 |
+
doi = (meta.get("identifier") or {}).get("doi")
|
| 506 |
+
enrichment, ewarns = fetch_semantic_scholar(doi)
|
| 507 |
+
result["enrichment"] = enrichment
|
| 508 |
+
warnings.extend(ewarns)
|
| 509 |
return jsonify({"result": result, "warnings": warnings})
|
| 510 |
|
| 511 |
if __name__ == "__main__":
|