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README.md

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-# BERTopic Thematic Analysis Agent
-
-Gradio app for a Braun & Clarke (2006) six-phase thematic analysis pipeline using BERTopic clustering and LLM-assisted labeling.
-
-## Features
-- Upload Scopus CSV and run a guided phase-by-phase analysis.
-- BERTopic discovery with charts (bar, treemap, scatter, heatmap).
-- Review table workflow for approvals, renames, and grouping.
-- PAJAIS taxonomy mapping and narrative export.
-
-## Requirements
-- Python 3.11
-- Mistral API key
-
-## Setup
-1. Create and activate a virtual environment.
-2. Install dependencies:
-
-   pip install -r requirements.txt
-
-3. Set the Mistral API key in your environment:
-
-   MISTRAL_API_KEY=your_key_here
-
-## Run
-
-python app.py
-
-Then open the local URL shown in the terminal.
-
-## Notes
-- Phase 2 calls the Mistral API to label topics; rate limits may apply.
-- Charts are loaded from charts.json, which is regenerated when Phase 2 runs.
-
-## Hugging Face Spaces
-1. Create a new Space (Gradio).
-2. Upload app.py, agent.py, tools.py, requirements.txt.
-3. Add MISTRAL_API_KEY as a Space secret.
-4. Build and run.
-
-## Project Structure
-- app.py: Gradio UI and workflow wiring.
-- agent.py: LangGraph ReAct agent configuration.
-- tools.py: Pipeline tools (CSV load, BERTopic, labeling, taxonomy, exports).
-- summaries.json: Run summaries (generated).
-- charts.json: Plotly chart JSON (generated).