Spaces:
Sleeping
Sleeping
Update app.py
Browse files
app.py
CHANGED
|
@@ -68,6 +68,7 @@ st.title("CLL Explorer - Malaria Cell Detection")
|
|
| 68 |
|
| 69 |
st.markdown("""
|
| 70 |
### About This Application
|
|
|
|
| 71 |
- **Upload** microscope images.
|
| 72 |
- **Adjust** image view with zoom and enhancement controls.
|
| 73 |
- **Detect** and measure cells automatically.
|
|
@@ -85,35 +86,40 @@ if uploaded_files:
|
|
| 85 |
img_data = uploaded_files[img_index].read()
|
| 86 |
img = Image.open(io.BytesIO(img_data)).resize((500, 500))
|
| 87 |
|
| 88 |
-
#
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 89 |
st.subheader("Processed Image")
|
| 90 |
-
|
| 91 |
-
|
| 92 |
-
|
| 93 |
-
|
| 94 |
-
|
| 95 |
-
|
| 96 |
-
brightness = st.slider("Brightness", 0.0, 5.0, 1.0)
|
| 97 |
-
sharpness = st.slider("Sharpness", 0.0, 2.0, 1.0)
|
| 98 |
-
|
| 99 |
-
def apply_enhancements(image):
|
| 100 |
-
zoomed = zoom_at(image, x, y, zoom)
|
| 101 |
-
enhanced_contrast = ImageEnhance.Contrast(zoomed).enhance(contrast)
|
| 102 |
-
enhanced_bright = ImageEnhance.Brightness(enhanced_contrast).enhance(brightness)
|
| 103 |
-
enhanced_sharp = ImageEnhance.Sharpness(enhanced_bright).enhance(sharpness)
|
| 104 |
-
return enhanced_sharp
|
| 105 |
-
|
| 106 |
-
processed_img = apply_enhancements(img)
|
| 107 |
-
st.image(processed_img, caption="Processed Image")
|
| 108 |
-
|
| 109 |
-
# Show Original Image next
|
| 110 |
st.subheader("Original Image")
|
| 111 |
-
st.image(img, caption="Original Image")
|
| 112 |
|
| 113 |
# Save Options
|
| 114 |
save_image = st.checkbox("Save Processed Image")
|
| 115 |
if save_image:
|
| 116 |
-
processed_img.save("image-processed.jpg")
|
| 117 |
st.success("Image saved as `image-processed.jpg`")
|
| 118 |
|
| 119 |
with st.expander("Save Options"):
|
|
|
|
| 68 |
|
| 69 |
st.markdown("""
|
| 70 |
### About This Application
|
| 71 |
+
This tool assists researchers in analyzing microscope images of any cell type. Or something else entirely.
|
| 72 |
- **Upload** microscope images.
|
| 73 |
- **Adjust** image view with zoom and enhancement controls.
|
| 74 |
- **Detect** and measure cells automatically.
|
|
|
|
| 86 |
img_data = uploaded_files[img_index].read()
|
| 87 |
img = Image.open(io.BytesIO(img_data)).resize((500, 500))
|
| 88 |
|
| 89 |
+
# Sidebar for Image Controls
|
| 90 |
+
with st.sidebar:
|
| 91 |
+
st.header("Image Controls")
|
| 92 |
+
x = st.slider("X Coordinate", 0, 500, 250)
|
| 93 |
+
y = st.slider("Y Coordinate", 0, 500, 250)
|
| 94 |
+
zoom = st.slider("Zoom", 1, 10, 5)
|
| 95 |
+
|
| 96 |
+
with st.expander("Enhancement Settings", expanded=True):
|
| 97 |
+
contrast = st.slider("Contrast", 0.0, 5.0, 1.0)
|
| 98 |
+
brightness = st.slider("Brightness", 0.0, 5.0, 1.0)
|
| 99 |
+
sharpness = st.slider("Sharpness", 0.0, 2.0, 1.0)
|
| 100 |
+
|
| 101 |
+
if st.button("Apply Adjustments"):
|
| 102 |
+
processed_img = apply_enhancements(img)
|
| 103 |
+
st.session_state.processed_img = processed_img
|
| 104 |
+
else:
|
| 105 |
+
processed_img = apply_enhancements(img)
|
| 106 |
+
st.session_state.processed_img = processed_img
|
| 107 |
+
|
| 108 |
+
# Display Processed Image
|
| 109 |
st.subheader("Processed Image")
|
| 110 |
+
if 'processed_img' in st.session_state:
|
| 111 |
+
st.image(st.session_state.processed_img, use_column_width=True, caption="Processed Image")
|
| 112 |
+
else:
|
| 113 |
+
st.image(processed_img, use_column_width=True, caption="Processed Image")
|
| 114 |
+
|
| 115 |
+
# Display Original Image
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 116 |
st.subheader("Original Image")
|
| 117 |
+
st.image(img, use_column_width=True, caption="Original Image")
|
| 118 |
|
| 119 |
# Save Options
|
| 120 |
save_image = st.checkbox("Save Processed Image")
|
| 121 |
if save_image:
|
| 122 |
+
st.session_state.processed_img.save("image-processed.jpg")
|
| 123 |
st.success("Image saved as `image-processed.jpg`")
|
| 124 |
|
| 125 |
with st.expander("Save Options"):
|