Add explicit HF_TOKEN support for Hugging Face Spaces
Browse files- README.md +4 -0
- mediSync/models/image_analyzer.py +8 -2
- mediSync/models/text_analyzer.py +9 -2
README.md
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@@ -70,6 +70,10 @@ python app.py
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- Educational tool for medical students
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- Research tool for studying correlation between visual findings and written reports
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## Note
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This system is designed as a support tool and should not replace professional medical diagnosis. Always consult with healthcare professionals for medical decisions.
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- Educational tool for medical students
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- Research tool for studying correlation between visual findings and written reports
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## Environment Variables
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- **HF_TOKEN** (optional): Hugging Face token for accessing private models or improved rate limits. If not set, the system will use public models without authentication.
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## Note
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This system is designed as a support tool and should not replace professional medical diagnosis. Always consult with healthcare professionals for medical decisions.
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mediSync/models/image_analyzer.py
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@@ -35,9 +35,15 @@ class XRayImageAnalyzer:
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self.logger.info(f"Using device: {self.device}")
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# Load model and feature extractor
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try:
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self.feature_extractor = AutoFeatureExtractor.from_pretrained(
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-
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self.model.to(self.device)
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self.model.eval() # Set to evaluation mode
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self.logger.info(f"Successfully loaded model: {model_name}")
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self.logger.info(f"Using device: {self.device}")
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# Load model and feature extractor
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# Use HF_TOKEN from environment if available (for Hugging Face Spaces)
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hf_token = os.environ.get("HF_TOKEN") or os.environ.get("HUGGING_FACE_HUB_TOKEN")
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try:
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self.feature_extractor = AutoFeatureExtractor.from_pretrained(
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model_name, token=hf_token
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)
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self.model = AutoModelForImageClassification.from_pretrained(
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model_name, token=hf_token
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)
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self.model.to(self.device)
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self.model.eval() # Set to evaluation mode
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self.logger.info(f"Successfully loaded model: {model_name}")
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mediSync/models/text_analyzer.py
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@@ -1,4 +1,5 @@
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import logging
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import re
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import torch
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@@ -40,6 +41,9 @@ class MedicalReportAnalyzer:
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self.logger.info(f"Using device: {self.device}")
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# Load NER model for entity extraction
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try:
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self.ner_pipeline = pipeline(
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@@ -47,6 +51,7 @@ class MedicalReportAnalyzer:
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model=ner_model,
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aggregation_strategy="simple",
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device=0 if self.device == "cuda" else -1,
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)
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self.logger.info(f"Successfully loaded NER model: {ner_model}")
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except Exception as e:
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@@ -55,9 +60,11 @@ class MedicalReportAnalyzer:
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# Load classifier model for severity assessment
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try:
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self.tokenizer = AutoTokenizer.from_pretrained(
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self.classifier = AutoModelForSequenceClassification.from_pretrained(
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classifier_model
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)
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self.classifier.to(self.device)
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self.classifier.eval()
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import logging
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import os
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import re
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import torch
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self.logger.info(f"Using device: {self.device}")
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# Use HF_TOKEN from environment if available (for Hugging Face Spaces)
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hf_token = os.environ.get("HF_TOKEN") or os.environ.get("HUGGING_FACE_HUB_TOKEN")
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# Load NER model for entity extraction
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try:
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self.ner_pipeline = pipeline(
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model=ner_model,
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aggregation_strategy="simple",
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device=0 if self.device == "cuda" else -1,
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token=hf_token,
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)
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self.logger.info(f"Successfully loaded NER model: {ner_model}")
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except Exception as e:
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# Load classifier model for severity assessment
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try:
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self.tokenizer = AutoTokenizer.from_pretrained(
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classifier_model, token=hf_token
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)
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self.classifier = AutoModelForSequenceClassification.from_pretrained(
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classifier_model, token=hf_token
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)
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self.classifier.to(self.device)
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self.classifier.eval()
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