Update app.py
Browse files
app.py
CHANGED
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@@ -3,9 +3,12 @@ import numpy as np
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import pandas as pd
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import gradio as gr
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from pickle import load
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import sqlalchemy
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from radiomics import featureextractor
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from sqlalchemy.orm import sessionmaker
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extractor3D = featureextractor.RadiomicsFeatureExtractor("3DParams.yaml")
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with open("model.pickle", "rb") as file:
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@@ -24,8 +27,41 @@ def validation(username : str, password : str):
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with gr.Blocks(title="Clasificación") as AIModel:
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with gr.Row():
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with gr.Column():
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with gr.Column():
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label_output = gr.Label(label="Resultado")
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comment_output = gr.Textbox(label="Observación", type="text", interactive=True)
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@@ -37,22 +73,28 @@ with gr.Blocks(title="Clasificación") as AIModel:
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with gr.Column():
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submit_button = gr.Button(value="Enviar", variant="primary")
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with gr.Column():
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flag_button = gr.Button(value="Marcar")
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def make_prediction(image, label_output, comment_output):
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grade1 = list(label_output.values())[0]
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grade2 = list(label_output.values())[1]
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engine = sqlalchemy.create_engine("sqlite:///
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Session = sessionmaker(bind=engine)
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session = Session()
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new_prediction = {
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"Imagen": image,
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"Grado 1":
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"Grado 2": grade2,
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"Observacion": comment_output,
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"Usuario ID": 1,
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}
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session.execute(stmt)
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session.commit()
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@@ -70,6 +112,7 @@ with gr.Blocks(title="Clasificación") as AIModel:
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flag_button.click(fn=make_prediction, inputs=[image_file, label_output, comment_output])
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submit_button.click(fn=image_classifier, inputs=[image_file, segment_file], outputs=[label_output])
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with gr.Blocks(title="Historial de diagnósticos") as ViewingHistory:
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temp = pd.read_sql_table("Predicciones", "sqlite:///database_test.db")
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@@ -92,7 +135,7 @@ with gr.Blocks(title="Base de datos") as Database:
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with gr.Blocks(title="Información de usuario", delete_cache=[60, 120]) as AdminInformation:
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username : str = ""
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first_names : str = ""
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last_names : str = ""
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email : str = ""
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import pandas as pd
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import gradio as gr
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from pickle import load
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from datetime import datetime
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import sqlalchemy
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from radiomics import featureextractor
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from sqlalchemy.orm import sessionmaker
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import nibabel as nib
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from PIL import Image
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extractor3D = featureextractor.RadiomicsFeatureExtractor("3DParams.yaml")
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with open("model.pickle", "rb") as file:
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with gr.Blocks(title="Clasificación") as AIModel:
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with gr.Row():
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with gr.Column():
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image_file = gr.File(file_count="single", file_types=[".nii.gz", ".nii"], type="filepath", label="Imagen")
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segment_file = gr.File(file_count="single", file_types=[".nii.gz", ".nii"], type="filepath", label="Segmento")
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dropdown_navigator = gr.Dropdown(value="eje X", choices=["eje X", "eje Y", "eje Z"], filterable=True, type="value", label="Eje")
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def change_slider(image, slider_value, axis):
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brain_volume_data = nib.load(image).get_fdata()
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if axis == "eje X":
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slice = brain_volume_data[slider_value, :, :]
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image = Image.fromarray(slice)
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image = image.rotate(90)
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return image
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elif axis == "eje Y":
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slice = brain_volume_data[:, slider_value, :]
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image = Image.fromarray(slice)
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image = image.rotate(90)
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return image
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else:
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slice = brain_volume_data[:, :, slider_value]
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image = Image.fromarray(slice)
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return image
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@gr.render(inputs=[image_file, dropdown_navigator])
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def preview_image (image, axis):
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if image == None or image == "":
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return
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if axis == "eje X":
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slider = gr.Slider(value=int(nib.load(image).get_fdata().shape[0] // 2), minimum=0, maximum=nib.load(image).get_fdata().shape[0] - 1, label="Control deslizante")
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elif axis == "eje Y":
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slider = gr.Slider(value=int(nib.load(image).get_fdata().shape[1] // 2), minimum=0, maximum=nib.load(image).get_fdata().shape[1] - 1, label="Control deslizante")
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else:
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slider = gr.Slider(value=int(nib.load(image).get_fdata().shape[2] // 2), minimum=0, maximum=nib.load(image).get_fdata().shape[2] - 1, label="Control deslizante")
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image_preview = gr.Image(label="Previsualización", interactive=False, type="pil")
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slider.change(fn=change_slider, inputs=[image_file, slider, dropdown_navigator], outputs=[image_preview])
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with gr.Column():
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label_output = gr.Label(label="Resultado")
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comment_output = gr.Textbox(label="Observación", type="text", interactive=True)
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with gr.Column():
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submit_button = gr.Button(value="Enviar", variant="primary")
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with gr.Column():
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flag_button = gr.Button(value="Marcar")
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def make_prediction(image, label_output, comment_output):
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grade1 = list(label_output.values())[0]
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grade2 = list(label_output.values())[1]
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engine = sqlalchemy.create_engine("sqlite:///database_test.db", echo=False)
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Session = sessionmaker(bind=engine)
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session = Session()
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metadata = sqlalchemy.MetaData()
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predictions_table = sqlalchemy.Table("Predicciones", metadata, autoload_with=engine)
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new_prediction = {
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"Imagen": image,
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"Grado 1":grade1,
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"Grado 2": grade2,
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"Observacion": comment_output,
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"Usuario ID": 1,
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"Ultima actualizacion": datetime.utcnow(),
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"Creado el": datetime.utcnow()
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}
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stmt = predictions_table.insert().values(**new_prediction)
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session.execute(stmt)
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session.commit()
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flag_button.click(fn=make_prediction, inputs=[image_file, label_output, comment_output])
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submit_button.click(fn=image_classifier, inputs=[image_file, segment_file], outputs=[label_output])
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with gr.Blocks(title="Historial de diagnósticos") as ViewingHistory:
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temp = pd.read_sql_table("Predicciones", "sqlite:///database_test.db")
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with gr.Blocks(title="Información de usuario", delete_cache=[60, 120]) as AdminInformation:
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username : str = ""
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first_names : str = ""
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last_names : str = ""
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email : str = ""
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