Update app.py
Browse files
app.py
CHANGED
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@@ -1,6 +1,7 @@
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import
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import numpy as np
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import pandas as pd
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from pickle import load
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from datetime import date
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from radiomics import featureextractor
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@@ -9,17 +10,6 @@ extractor3D = featureextractor.RadiomicsFeatureExtractor("3DParams.yaml")
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with open("model.pickle", "rb") as file:
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loaded_model = load(file)
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class TextStream:
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def __init__(self):
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self.data : list = []
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def write(self, s):
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if s.strip():
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self.data.append(s.strip())
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def flush(self):
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pass
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def image_classifier(image, segment):
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features3D = extractor3D.execute(imageFilepath=image, maskFilepath=segment)
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@@ -31,9 +21,9 @@ def image_classifier(image, segment):
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dict[key] = [value]
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dataframe = pd.DataFrame(dict).select_dtypes(exclude=["object"]).to_numpy()
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prediction = loaded_model.predict_proba(dataframe).tolist()[0]
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return {"
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def logging(image, label_output):
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grade1 = list(label_output.values())[0]
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grade2 = list(label_output.values())[1]
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now = date.today()
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@@ -41,19 +31,32 @@ def logging(image, label_output):
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"Imagen": [image],
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"Grado 1": [grade1],
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"Grado 2": [grade2],
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"Observación": [
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"Fecha": [now.strftime("%d/%m/%Y")],
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"Acción": [f"
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}
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dataframe = pd.DataFrame(data=dictionary)
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dataframe.to_csv(path_or_buf="log.csv", sep=";", mode="a", index=False)
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# Logger = gr.SimpleCSVLogger()
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with gr.Blocks(title="Historial de diagnósticos") as ViewingHistory:
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dataframe = pd.
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value=dataframe,
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headers=["Imagen", "Grado 1", "Grado 2", "Observación", "Fecha", "Acción"],
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datatype=["str", "number", "number", "str", "date", "markdown"],
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@@ -64,21 +67,31 @@ with gr.Blocks(title="Historial de diagnósticos") as ViewingHistory:
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with gr.Blocks(title="Base de datos") as Database:
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with gr.Row():
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with gr.Column():
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gr.Dropdown(
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)
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with gr.Row():
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gr.Dataframe(
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headers=["Imagen", "Grado 1", "Grado 2", "Observación", "Fecha"],
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datatype=["str", "number", "number", "str", "date"],
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row_count=(3, "dynamic"),
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col_count=(5, "dynamic"),
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type="pandas",
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wrap=True,
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interactive=False
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)
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with gr.Blocks(title="Información de usuario") as AdminInformation:
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with gr.Row():
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@@ -104,20 +117,21 @@ with gr.Blocks(title="Información de usuario") as AdminInformation:
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with gr.Blocks(title="Clasificación") as MyModel:
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with gr.Row():
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with gr.Column():
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image_file = gr.File(file_count="single", file_types=[".nii.gz", ".nii"], type="
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segment_file = gr.File(file_count="single", file_types=[".nii.gz", ".nii"], type="
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with gr.Column():
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label_output = gr.Label(label="Resultado")
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with gr.Row():
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with gr.Column():
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with gr.Row():
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with gr.Column():
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clear_button = gr.ClearButton(value="Borrar", components=[image_file, segment_file, label_output])
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with gr.Column():
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submit_button = gr.Button(value="Enviar", variant="primary")
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with gr.Column():
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flag_button = gr.Button(value="Marcar")
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flag_button.click(fn=logging, inputs=[image_file, label_output])
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submit_button.click(fn=image_classifier, inputs=[image_file, segment_file], outputs=[label_output])
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# MainModel = gr.Interface(
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@@ -139,7 +153,36 @@ demo = gr.TabbedInterface(
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tab_names=["Aplicación", "Historial", "Base de datos", "Administrador"],
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)
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share=True,
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debug=True
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)
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import os
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import numpy as np
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import pandas as pd
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import gradio as gr
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from pickle import load
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from datetime import date
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from radiomics import featureextractor
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with open("model.pickle", "rb") as file:
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loaded_model = load(file)
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def image_classifier(image, segment):
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features3D = extractor3D.execute(imageFilepath=image, maskFilepath=segment)
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dict[key] = [value]
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dataframe = pd.DataFrame(dict).select_dtypes(exclude=["object"]).to_numpy()
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prediction = loaded_model.predict_proba(dataframe).tolist()[0]
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return {"Grado 1": prediction[0], "Grado 2": prediction[1]}
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def logging(image, label_output, comment_output):
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grade1 = list(label_output.values())[0]
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grade2 = list(label_output.values())[1]
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now = date.today()
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"Imagen": [image],
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"Grado 1": [grade1],
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"Grado 2": [grade2],
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"Observación": [comment_output],
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"Fecha": [now.strftime("%d/%m/%Y")],
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"Acción": [f"[Descargar]({image})"]
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}
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dataframe = pd.DataFrame(data=dictionary)
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dataframe.to_csv(path_or_buf="log.csv", sep=";", mode="a", index=False)
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return dataframe
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# Logger = gr.SimpleCSVLogger()
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def on_selected(event : gr.SelectData):
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return f"You selected {event.value} at {event.index} from {event.target}"
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gradioDataframe = gr.DataFrame()
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with gr.Blocks(title="Historial de diagnósticos") as ViewingHistory:
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dataframe = pd.DataFrame({
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"Imagen": [""],
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"Grado 1": [0],
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"Grado 2": [0],
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"Observación": [""],
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"Fecha": [""],
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"Acción": [""],
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})
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if os.path.isfile("log.csv"):
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dataframe = pd.read_csv(filepath_or_buffer="log.csv", sep=";")
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gradioDataframe = gr.Dataframe(
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value=dataframe,
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headers=["Imagen", "Grado 1", "Grado 2", "Observación", "Fecha", "Acción"],
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datatype=["str", "number", "number", "str", "date", "markdown"],
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with gr.Blocks(title="Base de datos") as Database:
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with gr.Row():
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with gr.Column():
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dropdown = gr.Dropdown(
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choices=["Usuarios", "Imágenes", "Resultados"],
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filterable=False, label="Tabla",
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scale=2
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)
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with gr.Column():
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button = gr.Button(value="Buscar")
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with gr.Row():
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dataframe = gr.Dataframe(
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type="pandas",
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wrap=True,
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interactive=False
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)
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def on_selected(selected_value):
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if selected_value == "Usuarios":
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db_df = pd.read_sql_table("users", "sqlite:///database.db")
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elif selected_value == "Imágenes":
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db_df = pd.read_sql_table("images", "sqlite:///database.db")
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else:
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db_df = pd.read_sql_table("predictions", "sqlite:///database.db")
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return db_df
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button.click(on_selected, dropdown, dataframe)
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with gr.Blocks(title="Información de usuario") as AdminInformation:
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with gr.Row():
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with gr.Blocks(title="Clasificación") as MyModel:
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with gr.Row():
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with gr.Column():
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image_file = gr.File(file_count="single", file_types=[".nii.gz", ".nii"], type="binary", label="Imagen")
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segment_file = gr.File(file_count="single", file_types=[".nii.gz", ".nii"], type="binary", label="Segmento")
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with gr.Column():
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label_output = gr.Label(label="Resultado")
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comment_output = gr.Textbox(label="Observación", type="text", interactive=True)
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with gr.Row():
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with gr.Column():
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with gr.Row():
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with gr.Column():
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clear_button = gr.ClearButton(value="Borrar", components=[image_file, segment_file, label_output, comment_output])
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with gr.Column():
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submit_button = gr.Button(value="Enviar", variant="primary")
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with gr.Column():
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flag_button = gr.Button(value="Marcar")
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flag_button.click(fn=logging, inputs=[image_file, label_output, comment_output], outputs=[gradioDataframe])
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submit_button.click(fn=image_classifier, inputs=[image_file, segment_file], outputs=[label_output])
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# MainModel = gr.Interface(
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tab_names=["Aplicación", "Historial", "Base de datos", "Administrador"],
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)
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with gr.Blocks(title="Inicio de sesión") as Login:
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with gr.Column():
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email = gr.Textbox(label="Correo electrónico", interactive=True, type="email", max_lines=1)
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password = gr.Textbox(label="Contraseña", interactive=True, type="password", max_lines=1)
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button = gr.Button("Acceder", variant="primary")
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def password_validation(emailInput, passwordInput):
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if emailInput == "" or passwordInput == "":
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return gr.Info("Ingresar correo eléctronico y contraseña")
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userTable = pd.read_sql_table("users", "sqlite:///database.db")
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userRow = userTable[userTable["email"] == emailInput]
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if userRow.empty:
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return gr.Warning("Correo electrónico o contraseña incorrecta")
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userPassword = userRow["password"].to_numpy().tolist()[0]
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print(userPassword, passwordInput, userPassword == passwordInput)
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if userPassword == passwordInput:
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Login = demo.launch(inline=True)
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else:
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return gr.Warning("Correo electrónico o contraseña incorrecta")
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button.click(password_validation, inputs=[email, password])
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Login.launch(
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share=True,
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debug=True
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)
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