Upload requirements.txt

requirements.txt

@@ -1,26 +1,92 @@
-numpy>=1.24.0
-pandas>=2.0.0
-matplotlib>=3.7.0
-seaborn>=0.12.0
-scikit-learn>=1.3.0
-streamlit
-# Biology/Bioinformatics
-biopython>=1.81
-
-# Deep Learning (choose one based on your GPU)
-torch>=2.0.0  # For NVIDIA GPUs
-# tensorflow>=2.13.0  # Alternative if you prefer TensorFlow
-
-# Transformers for Protein Language Models
-transformers>=4.30.0
-sentencepiece>=0.1.99
-
-# GO Ontology parsing
-obonet>=1.0.0
-networkx>=3.0
-
-# Progress bars
-tqdm>=4.65.0
-
-# Utilities
-joblib>=1.3.0
+altair==6.0.0
+asttokens==3.0.1
+attrs==25.4.0
+biopython==1.86
+blinker==1.9.0
+cachetools==6.2.4
+certifi==2025.11.12
+charset-normalizer==3.4.4
+click==8.3.1
+colorama==0.4.6
+comm==0.2.3
+contourpy==1.3.3
+cycler==0.12.1
+debugpy==1.8.19
+decorator==5.2.1
+executing==2.2.1
+filelock==3.20.1
+fonttools==4.61.1
+fsspec==2025.12.0
+gitdb==4.0.12
+GitPython==3.1.45
+huggingface-hub==0.36.0
+idna==3.11
+ipykernel==7.1.0
+ipython==9.8.0
+ipython_pygments_lexers==1.1.1
+jedi==0.19.2
+Jinja2==3.1.6
+joblib==1.5.3
+jsonschema==4.25.1
+jsonschema-specifications==2025.9.1
+jupyter_client==8.7.0
+jupyter_core==5.9.1
+kiwisolver==1.4.9
+MarkupSafe==3.0.3
+matplotlib==3.10.8
+matplotlib-inline==0.2.1
+mpmath==1.3.0
+narwhals==2.14.0
+nest-asyncio==1.6.0
+networkx==3.6.1
+numpy==2.3.5
+obonet==1.1.1
+packaging==25.0
+pandas==2.3.3
+parso==0.8.5
+pillow==12.0.0
+platformdirs==4.5.1
+plotly==6.5.0
+prompt_toolkit==3.0.52
+protobuf==6.33.2
+psutil==7.1.3
+pure_eval==0.2.3
+pyarrow==22.0.0
+pydeck==0.9.1
+Pygments==2.19.2
+pyparsing==3.2.5
+python-dateutil==2.9.0.post0
+pytz==2025.2
+PyYAML==6.0.3
+pyzmq==27.1.0
+referencing==0.37.0
+regex==2025.11.3
+requests==2.32.5
+rpds-py==0.30.0
+safetensors==0.7.0
+scikit-learn==1.8.0
+scipy==1.16.3
+seaborn==0.13.2
+sentencepiece==0.2.1
+setuptools==80.9.0
+six==1.17.0
+smmap==5.0.2
+stack-data==0.6.3
+streamlit==1.52.2
+sympy==1.14.0
+tenacity==9.1.2
+threadpoolctl==3.6.0
+tokenizers==0.22.1
+toml==0.10.2
+torch==2.9.1+cu128
+torchaudio==2.9.1+cu128
+torchvision==0.24.1+cu128
+tornado==6.5.4
+tqdm==4.67.1
+traitlets==5.14.3
+transformers==4.57.3
+typing_extensions==4.15.0
+tzdata==2025.3
+urllib3==2.6.2
+watchdog==6.0.0
+wcwidth==0.2.14