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Update app.py
Browse files
app.py
CHANGED
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@@ -37,102 +37,7 @@ LIME_NUM_SAMPLES = 3000
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# ============================================================
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# EXACT 146 RF FEATURES
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# ============================================================
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selected_features = [
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"_SolventAccessibilityC3", "_SecondaryStrC1",
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"_SecondaryStrC3", "_ChargeC1", "_PolarityC1",
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"_NormalizedVDWVC1", "_HydrophobicityC3",
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"_SecondaryStrT23", "_PolarizabilityD1001",
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"_PolarizabilityD2001", "_PolarizabilityD3001",
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"_SolventAccessibilityD1001",
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"_SolventAccessibilityD2001",
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"_SolventAccessibilityD3001", "_SecondaryStrD1001",
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"_SecondaryStrD1075", "_SecondaryStrD2001",
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"_SecondaryStrD3001", "_ChargeD1001",
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"_ChargeD1025", "_ChargeD2001", "_ChargeD3075",
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"_ChargeD3100", "_PolarityD1001", "_PolarityD1050",
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"_PolarityD2001", "_PolarityD3001",
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"_NormalizedVDWVD1001", "_NormalizedVDWVD2001",
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"_NormalizedVDWVD2025", "_NormalizedVDWVD2050",
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"_NormalizedVDWVD3001", "_HydrophobicityD1001",
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"_HydrophobicityD2001", "_HydrophobicityD3001",
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"_HydrophobicityD3025",
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"A", "R", "D", "C", "E", "Q", "H", "I",
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"M", "P", "Y", "V",
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"AR", "AV", "RC", "RL", "RV", "CR", "CC",
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"CL", "CK", "EE", "EI", "EL", "HC", "IA",
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"IL", "IV", "LA", "LC", "LE", "LI", "LT",
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"LV", "KC", "MA", "MS", "SC", "TC", "TV",
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"YC", "VC", "VE", "VL", "VK", "VV",
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"MoreauBrotoAuto_FreeEnergy30",
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"MoranAuto_Hydrophobicity2",
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"MoranAuto_Hydrophobicity4",
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"GearyAuto_Hydrophobicity20",
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"GearyAuto_Hydrophobicity24",
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"GearyAuto_Hydrophobicity26",
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"GearyAuto_Hydrophobicity27",
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"GearyAuto_Hydrophobicity28",
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"GearyAuto_Hydrophobicity29",
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"GearyAuto_Hydrophobicity30",
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"GearyAuto_AvFlexibility22",
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"GearyAuto_AvFlexibility26",
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"GearyAuto_AvFlexibility27",
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"GearyAuto_AvFlexibility28",
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"GearyAuto_AvFlexibility29",
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"GearyAuto_AvFlexibility30",
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"GearyAuto_Polarizability22",
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"GearyAuto_Polarizability24",
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"GearyAuto_Polarizability25",
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"GearyAuto_Polarizability27",
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"GearyAuto_Polarizability28",
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"GearyAuto_Polarizability29",
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"GearyAuto_Polarizability30",
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"GearyAuto_FreeEnergy24",
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"GearyAuto_FreeEnergy25",
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"GearyAuto_FreeEnergy30",
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"GearyAuto_ResidueASA21",
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"GearyAuto_ResidueASA22",
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"GearyAuto_ResidueASA23",
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"GearyAuto_ResidueASA24",
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"GearyAuto_ResidueASA30",
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"GearyAuto_ResidueVol21",
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"GearyAuto_ResidueVol24",
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"GearyAuto_ResidueVol25",
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"GearyAuto_ResidueVol26",
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"GearyAuto_ResidueVol28",
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"GearyAuto_ResidueVol29",
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"GearyAuto_ResidueVol30",
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"GearyAuto_Steric18",
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"GearyAuto_Steric21",
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"GearyAuto_Steric26",
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"GearyAuto_Steric27",
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"GearyAuto_Steric28",
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"GearyAuto_Steric29",
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"GearyAuto_Steric30",
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"GearyAuto_Mutability23",
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"GearyAuto_Mutability25",
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"GearyAuto_Mutability26",
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"GearyAuto_Mutability28",
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"GearyAuto_Mutability29",
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"GearyAuto_Mutability30",
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"APAAC1", "APAAC4", "APAAC5", "APAAC6",
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"APAAC8", "APAAC9", "APAAC12", "APAAC13",
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"APAAC15", "APAAC18", "APAAC19", "APAAC24"
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]
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# ============================================================
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# CHECK FEATURE COUNT
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# ============================================================
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# EXACT 146 RF FEATURES
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# ============================================================
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selected_features = ["_SolventAccessibilityC3", "_SecondaryStrC1", "_SecondaryStrC3", "_ChargeC1", "_PolarityC1", "_NormalizedVDWVC1", "_HydrophobicityC3", "_SecondaryStrT23", "_PolarizabilityD1001", "_PolarizabilityD2001", "_PolarizabilityD3001", "_SolventAccessibilityD1001", "_SolventAccessibilityD2001", "_SolventAccessibilityD3001", "_SecondaryStrD1001", "_SecondaryStrD1075", "_SecondaryStrD2001", "_SecondaryStrD3001", "_ChargeD1001", "_ChargeD1025", "_ChargeD2001", "_ChargeD3075", "_ChargeD3100", "_PolarityD1001", "_PolarityD1050", "_PolarityD2001", "_PolarityD3001", "_NormalizedVDWVD1001", "_NormalizedVDWVD2001", "_NormalizedVDWVD2025", "_NormalizedVDWVD2050", "_NormalizedVDWVD3001", "_HydrophobicityD1001", "_HydrophobicityD2001", "_HydrophobicityD3001", "_HydrophobicityD3025", "A", "R", "D", "C", "E", "Q", "H", "I", "M", "P", "Y", "V", "AR", "AV", "RC", "RL", "RV", "CR", "CC", "CL", "CK", "EE", "EI", "EL", "HC", "IA", "IL", "IV", "LA", "LC", "LE", "LI", "LT", "LV", "KC", "MA", "MS", "SC", "TC", "TV", "YC", "VC", "VE", "VL", "VK", "VV", "MoreauBrotoAuto_FreeEnergy30", "MoranAuto_Hydrophobicity2", "MoranAuto_Hydrophobicity4", "GearyAuto_Hydrophobicity20", "GearyAuto_Hydrophobicity24", "GearyAuto_Hydrophobicity26", "GearyAuto_Hydrophobicity27", "GearyAuto_Hydrophobicity28", "GearyAuto_Hydrophobicity29", "GearyAuto_Hydrophobicity30", "GearyAuto_AvFlexibility22", "GearyAuto_AvFlexibility26", "GearyAuto_AvFlexibility27", "GearyAuto_AvFlexibility28", "GearyAuto_AvFlexibility29", "GearyAuto_AvFlexibility30", "GearyAuto_Polarizability22", "GearyAuto_Polarizability24", "GearyAuto_Polarizability25", "GearyAuto_Polarizability27", "GearyAuto_Polarizability28", "GearyAuto_Polarizability29", "GearyAuto_Polarizability30", "GearyAuto_FreeEnergy24", "GearyAuto_FreeEnergy25", "GearyAuto_FreeEnergy30", "GearyAuto_ResidueASA21", "GearyAuto_ResidueASA22", "GearyAuto_ResidueASA23", "GearyAuto_ResidueASA24", "GearyAuto_ResidueASA30", "GearyAuto_ResidueVol21", "GearyAuto_ResidueVol24", "GearyAuto_ResidueVol25", "GearyAuto_ResidueVol26", "GearyAuto_ResidueVol28", "GearyAuto_ResidueVol29", "GearyAuto_ResidueVol30", "GearyAuto_Steric18", "GearyAuto_Steric21", "GearyAuto_Steric26", "GearyAuto_Steric27", "GearyAuto_Steric28", "GearyAuto_Steric29", "GearyAuto_Steric30", "GearyAuto_Mutability23", "GearyAuto_Mutability25", "GearyAuto_Mutability26", "GearyAuto_Mutability27", "GearyAuto_Mutability28", "GearyAuto_Mutability29", "GearyAuto_Mutability30", "APAAC1", "APAAC4", "APAAC5", "APAAC6", "APAAC8", "APAAC9", "APAAC12", "APAAC13", "APAAC15", "APAAC18", "APAAC19", "APAAC24"]
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# ============================================================
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# CHECK FEATURE COUNT
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