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Update app.py
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app.py
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import gradio as gr
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import os
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import requests
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import base64
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# Environment variables
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SENDGRID_KEY = os.environ["SENDGRID_API_KEY"]
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def send_report(to_email, pdf_b64, label, confidence, sequence):
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html_content = f"""
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<div style="font-family: 'Segoe UI', Arial, sans-serif; max-width:600px; margin:auto; color:#1a2540; line-height:1.6">
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<!-- Header -->
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<div style="background:#00285a; padding:22px; border-radius:10px 10px 0 0;">
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<h2 style="color:#ffffff; margin:0">EPIC-AMP Analysis Report</h2>
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Explainable Antimicrobial Peptide Classification Platform
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</p>
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</div>
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<!-- Body -->
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<div style="border:1px solid #d0daea; border-top:none; padding:24px; border-radius:0 0 10px 10px">
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<p>Dear User,</p>
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<p>
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Your peptide sequence has been successfully analyzed using the <strong>EPIC-AMP platform</strong>.
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Please find your detailed report attached
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</p>
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<
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<tr style="background:#f0f4fa">
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<td style="padding:10px; font-weight:bold
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<td style="padding:10px">{label}</td>
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</tr>
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<tr>
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<td style="padding:10px; font-weight:bold">Confidence Score</td>
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<td style="padding:10px">{confidence}</td>
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</tr>
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<tr style="background:#f0f4fa">
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<td style="padding:10px; font-weight:bold">Input Sequence</td>
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<td style="padding:10px; font-family:monospace; font-size:12px; word-break:break-all">
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{sequence}
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</td>
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</tr>
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</table>
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<p>
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The attached report
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</p>
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<p>
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If you have any questions or need assistance,
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</p>
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<p style="margin-top:24px">
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Best regards,<br>
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<strong>EPIC-AMP Team</strong>
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</p>
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<!-- Footer -->
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<hr style="border:none; border-top:1px solid #e0e6f0; margin:24px 0">
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</div>
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</div>
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"""
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},
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timeout=20
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)
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return "sent" if resp.status_code == 202 else f"error:{resp.status_code}:{resp.text}"
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# Gradio
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gr.
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gr.Text(label="
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gr.Text(label="
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gr.Text(label="
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gr.Text(label="
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import gradio as gr
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import os
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import requests
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# Environment variables
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SENDGRID_KEY = os.environ["SENDGRID_API_KEY"]
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def send_report(to_email, pdf_b64, label, confidence, sequence):
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html_content = f"""
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<div style="font-family: 'Segoe UI', Arial, sans-serif; max-width:600px; margin:auto; color:#1a2540; line-height:1.6">
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<!-- Header -->
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<div style="background:#00285a; padding:22px; border-radius:10px 10px 0 0;">
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<h2 style="color:#ffffff; margin:0">EPIC-AMP Analysis Report</h2>
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Explainable Antimicrobial Peptide Classification Platform
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</p>
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</div>
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<!-- Body -->
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<div style="border:1px solid #d0daea; border-top:none; padding:24px; border-radius:0 0 10px 10px">
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<p>Dear Researcher,</p>
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<p>
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Your peptide sequence has been successfully analyzed using the <strong>EPIC-AMP platform</strong>.
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Please find your detailed PDF report attached to this email.
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</p>
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<p>Below is a summary of your analysis results:</p>
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<!-- Results Table -->
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<table style="width:100%; border-collapse:collapse; margin:18px 0; font-size:14px; border-radius:6px; overflow:hidden">
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<tr style="background:#00285a; color:#ffffff">
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<td style="padding:10px 14px; font-weight:bold; width:40%">Metric</td>
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<td style="padding:10px 14px; font-weight:bold">Result</td>
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</tr>
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<tr style="background:#f0f4fa">
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<td style="padding:10px 14px; font-weight:bold">Classification</td>
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<td style="padding:10px 14px; font-weight:bold; color:{'#2e7d32' if 'AMP' in label and 'Non' not in label else '#c62828'}">{label}</td>
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</tr>
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<tr>
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<td style="padding:10px 14px; font-weight:bold">Confidence Score</td>
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<td style="padding:10px 14px">{confidence}</td>
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</tr>
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<tr style="background:#f0f4fa">
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<td style="padding:10px 14px; font-weight:bold">Input Sequence</td>
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<td style="padding:10px 14px; font-family:monospace; font-size:12px; word-break:break-all; color:#003f7d">{sequence}</td>
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</tr>
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</table>
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<p>
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The attached PDF report includes a full breakdown of the prediction, LIME feature attributions,
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MIC predictions (if applicable), and global SHAP feature importance β providing complete
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interpretability to support your research.
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</p>
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<p>
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If you have any questions, suggestions, or need further assistance, please don't hesitate
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to reach out to us at
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<a href="mailto:epicamp.sup@gmail.com" style="color:#1a6fc4">epicamp.sup@gmail.com</a>.
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</p>
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<p style="margin-top:20px">
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Best regards,<br>
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<strong>The EPIC-AMP Team</strong><br>
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<span style="color:#666; font-size:13px">Bioinformatics & Computational Biology Unit (BCBU)</span>
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</p>
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<!-- Footer -->
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<hr style="border:none; border-top:1px solid #e0e6f0; margin:24px 0">
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<div style="display:flex; justify-content:space-between; align-items:center; flex-wrap:wrap; gap:8px">
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<p style="color:#888; font-size:11px; margin:0">
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Zewail City of Science and Technology Β· BCBU<br>
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Ahmed Zewail Street, October Gardens, Giza, Egypt
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</p>
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<p style="color:#888; font-size:11px; margin:0; text-align:right">
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π§ <a href="mailto:epicamp.sup@gmail.com" style="color:#1a6fc4">epicamp.sup@gmail.com</a><br>
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<span style="color:#bbb">This is an automated message β please do not reply directly.</span>
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</p>
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</div>
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</div>
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</div>
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"""
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},
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timeout=20
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)
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return "sent" if resp.status_code == 202 else f"error:{resp.status_code}:{resp.text}"
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# ββ Gradio Blocks (fixes "Could not get API info" error) ββββββββββββββ
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with gr.Blocks() as demo:
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with gr.Row():
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to_email = gr.Text(label="Recipient Email")
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pdf_b64 = gr.Text(label="PDF Base64")
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label_in = gr.Text(label="Label")
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confidence = gr.Text(label="Confidence")
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sequence = gr.Text(label="Sequence")
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result = gr.Text(label="Status")
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btn = gr.Button("Send")
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btn.click(
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fn=send_report,
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inputs=[to_email, pdf_b64, label_in, confidence, sequence],
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outputs=result,
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api_name="send" # β makes /send the stable API endpoint
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)
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demo.launch(ssr_mode=False) # β fixes the SSR startup warning
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