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Browse files- Dockerfile +2 -8
Dockerfile
CHANGED
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@@ -13,7 +13,7 @@ RUN apt-get update \
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&& rm -rf /var/lib/apt/lists/*
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# Install R packages
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RUN R -e "install.packages(c('shinyjqui','BiocManager','remotes', 'devtools', 'shiny','shinyscreenshot', 'readr', 'shinyAce', 'ggplot2', 'dplyr', 'shinythemes', 'openintro', 'plotly', 'DT', 'ggprism', 'ggbeeswarm', 'shinyFiles', 'stringr', 'shinyBS', 'shinydashboard', 'shinyWidgets', 'tidyr', 'pheatmap', 'grid', 'gridExtra', 'ggeasy', 'ggtext', 'colorspace', 'shinyjqui', 'tidyverse', 'gprofiler2', 'colourpicker', 'shinydashboardPlus', 'jsonlite', 'reshape2','shinyalert'))"
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RUN R -e 'BiocManager::install("graph")'
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RUN R -e "source('https://install-github.me/dreamRs/esquisse')"
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@@ -21,14 +21,12 @@ RUN R -e "source('https://install-github.me/dreamRs/esquisse')"
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# Install plumber and cyjshiny
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RUN R -e "install.packages(c('plumber','cyjShiny','svglite'))"
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# アプリケーションのディレクトリ構造を作成
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RUN mkdir -p /srv/app/modules \
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&& mkdir -p /srv/app/pathwaymap \
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&& mkdir -p /srv/app/svg \
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&& mkdir -p /srv/app/www \
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&& mkdir -p /srv/app/data
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# Nginxの設定とディレクトリ作成
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RUN rm /etc/nginx/sites-enabled/default \
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&& mkdir -p /var/cache/nginx \
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&& mkdir -p /var/log/nginx \
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@@ -47,7 +45,6 @@ RUN rm /etc/nginx/sites-enabled/default \
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COPY nginx.conf /etc/nginx/nginx.conf
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RUN chmod 666 /etc/nginx/nginx.conf
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# ファイルのコピー
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COPY ./app/ui.R /srv/app/
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COPY ./app/server.R /srv/app/
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COPY ./app/plumber.R /srv/app/
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@@ -57,17 +54,14 @@ COPY ./app/svg /srv/app/svg/
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COPY ./app/www /srv/app/www/
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COPY ./scripts/start.sh /usr/local/bin/start.sh
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RUN chmod +x /usr/local/bin/start.sh
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# ディレクトリの権限設定
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RUN chmod -R 777 /srv/app \
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&& chmod -R 777 /srv/app/data
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# ポート設定
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EXPOSE 7860
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EXPOSE 8000
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EXPOSE 9000
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# 起動コマンド
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CMD ["sh", "/usr/local/bin/start.sh"]
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&& rm -rf /var/lib/apt/lists/*
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# Install R packages
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RUN R -e "install.packages(c('shinyjqui','BiocManager','bslib','rstatix','ggpubr','remotes', 'devtools', 'shiny','shinyscreenshot', 'readr', 'shinyAce', 'ggplot2', 'dplyr', 'shinythemes', 'openintro', 'plotly', 'DT', 'ggprism', 'ggbeeswarm', 'shinyFiles', 'stringr', 'shinyBS', 'shinydashboard', 'shinyWidgets', 'tidyr', 'pheatmap', 'grid', 'gridExtra', 'ggeasy', 'ggtext', 'colorspace', 'shinyjqui', 'tidyverse', 'gprofiler2', 'colourpicker', 'shinydashboardPlus', 'jsonlite', 'reshape2','shinyalert'))"
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RUN R -e 'BiocManager::install("graph")'
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RUN R -e "source('https://install-github.me/dreamRs/esquisse')"
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# Install plumber and cyjshiny
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RUN R -e "install.packages(c('plumber','cyjShiny','svglite'))"
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RUN mkdir -p /srv/app/modules \
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&& mkdir -p /srv/app/pathwaymap \
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&& mkdir -p /srv/app/svg \
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&& mkdir -p /srv/app/www \
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&& mkdir -p /srv/app/data
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RUN rm /etc/nginx/sites-enabled/default \
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&& mkdir -p /var/cache/nginx \
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&& mkdir -p /var/log/nginx \
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COPY nginx.conf /etc/nginx/nginx.conf
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RUN chmod 666 /etc/nginx/nginx.conf
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COPY ./app/ui.R /srv/app/
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COPY ./app/server.R /srv/app/
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COPY ./app/plumber.R /srv/app/
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COPY ./app/www /srv/app/www/
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COPY ./scripts/start.sh /usr/local/bin/start.sh
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RUN chmod +x /usr/local/bin/start.sh
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RUN chmod -R 777 /srv/app \
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&& chmod -R 777 /srv/app/data
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EXPOSE 7860
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EXPOSE 8000
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EXPOSE 9000
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CMD ["sh", "/usr/local/bin/start.sh"]
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