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Commit
·
a667370
1
Parent(s):
798b478
fix cpu
Browse files
app.py
CHANGED
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@@ -38,13 +38,23 @@ datasets = ["scifact"]
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current_dataset = "scifact"
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def pool(last_hidden_states, attention_mask):
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last_hidden = last_hidden_states.masked_fill(~attention_mask[..., None].bool(), 0.0)
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sequence_lengths = attention_mask.sum(dim=1) - 1
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batch_size = last_hidden.shape[0]
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return last_hidden[torch.arange(batch_size, device=last_hidden.device), sequence_lengths]
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batch_dict = tokenizer(
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input_texts,
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max_length=max_length - 1,
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@@ -53,7 +63,10 @@ def create_batch_dict(tokenizer, input_texts, max_length=512):
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padding=False,
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truncation=True
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)
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return tokenizer.pad(
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batch_dict,
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padding=True,
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@@ -62,18 +75,44 @@ def create_batch_dict(tokenizer, input_texts, max_length=512):
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return_tensors="pt",
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)
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def load_faiss_index(dataset_name):
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@@ -128,31 +167,6 @@ def load_queries(dataset_name):
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qrels[dataset_name][qrel.query_id] = {}
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qrels[dataset_name][qrel.query_id][qrel.doc_id] = qrel.relevance
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@spaces.GPU
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def encode_queries(dataset_name, postfix):
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global queries, tokenizer, model
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input_texts = [f"query: {query.strip()} {postfix}".strip() for query in queries[dataset_name]]
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encoded_embeds = []
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batch_size = 32
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model = model.cuda()
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for start_idx in tqdm.tqdm(range(0, len(input_texts), batch_size), desc="Encoding queries"):
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batch_input_texts = input_texts[start_idx: start_idx + batch_size]
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batch_dict = create_batch_dict(tokenizer, batch_input_texts)
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batch_dict = {k: v.to(model.device) for k, v in batch_dict.items()}
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with torch.cuda.amp.autocast():
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with torch.no_grad():
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outputs = model(**batch_dict)
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embeds = pool(outputs.last_hidden_state, batch_dict['attention_mask'])
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embeds = F.normalize(embeds, p=2, dim=-1)
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encoded_embeds.append(embeds.float().cpu().numpy())
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model = model.cpu()
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return np.concatenate(encoded_embeds, axis=0)
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def evaluate(qrels, results, k_values):
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evaluator = pytrec_eval.RelevanceEvaluator(
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@@ -168,15 +182,11 @@ def evaluate(qrels, results, k_values):
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return metrics
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def run_evaluation(dataset, postfix):
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global current_dataset
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if dataset not in corpus_lookups or dataset not in queries:
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load_corpus_lookups(dataset)
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load_queries(dataset)
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current_dataset = dataset
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all_scores, psg_indices = search_queries(dataset, q_reps)
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results = {qid: dict(zip(doc_ids, map(float, scores)))
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@@ -189,16 +199,18 @@ def run_evaluation(dataset, postfix):
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"Recall@100": metrics["Recall@100"]
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}
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def gradio_interface(dataset, postfix):
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if 'model' not in globals() or model is None:
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load_model()
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for dataset in datasets:
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print(f"Loading dataset: {dataset}")
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load_corpus_lookups(dataset)
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load_queries(dataset)
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return run_evaluation(dataset, postfix)
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# Create Gradio interface
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iface = gr.Interface(
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fn=gradio_interface,
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current_dataset = "scifact"
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def pool(last_hidden_states, attention_mask, pool_type="last"):
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last_hidden = last_hidden_states.masked_fill(~attention_mask[..., None].bool(), 0.0)
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if pool_type == "last":
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left_padding = (attention_mask[:, -1].sum() == attention_mask.shape[0])
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if left_padding:
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emb = last_hidden[:, -1]
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else:
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sequence_lengths = attention_mask.sum(dim=1) - 1
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batch_size = last_hidden.shape[0]
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emb = last_hidden[torch.arange(batch_size, device=last_hidden.device), sequence_lengths]
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else:
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raise ValueError(f"pool_type {pool_type} not supported")
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return emb
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def create_batch_dict(tokenizer, input_texts, always_add_eos="last", max_length=512):
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batch_dict = tokenizer(
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input_texts,
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max_length=max_length - 1,
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padding=False,
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truncation=True
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)
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if always_add_eos == "last":
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batch_dict['input_ids'] = [input_ids + [tokenizer.eos_token_id] for input_ids in batch_dict['input_ids']]
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return tokenizer.pad(
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batch_dict,
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padding=True,
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return_tensors="pt",
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)
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class RepLlamaModel:
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def __init__(self, model_name_or_path):
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self.base_model = "meta-llama/Llama-2-7b-hf"
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self.tokenizer = AutoTokenizer.from_pretrained(self.base_model)
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self.tokenizer.model_max_length = 2048
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self.tokenizer.pad_token_id = self.tokenizer.eos_token_id
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self.tokenizer.pad_token = self.tokenizer.eos_token
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self.tokenizer.padding_side = "right"
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self.model = self.get_model(model_name_or_path)
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self.model.config.max_length = 2048
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def get_model(self, peft_model_name):
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base_model = AutoModel.from_pretrained(self.base_model)
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model = PeftModel.from_pretrained(base_model, peft_model_name)
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model = model.merge_and_unload()
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model.eval()
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return model
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@spaces.GPU
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def encode(self, texts, batch_size=32, **kwargs):
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self.model = self.model.cuda()
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all_embeddings = []
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for i in range(0, len(texts), batch_size):
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batch_texts = texts[i:i+batch_size]
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batch_dict = create_batch_dict(self.tokenizer, batch_texts, always_add_eos="last")
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batch_dict = {key: value.cuda() for key, value in batch_dict.items()}
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with torch.cuda.amp.autocast():
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with torch.no_grad():
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outputs = self.model(**batch_dict)
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embeddings = pool(outputs.last_hidden_state, batch_dict['attention_mask'], 'last')
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embeddings = F.normalize(embeddings, p=2, dim=-1)
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all_embeddings.append(embeddings.cpu().numpy())
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self.model = self.model.cpu()
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return np.concatenate(all_embeddings, axis=0)
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def load_faiss_index(dataset_name):
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qrels[dataset_name][qrel.query_id] = {}
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qrels[dataset_name][qrel.query_id][qrel.doc_id] = qrel.relevance
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def evaluate(qrels, results, k_values):
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evaluator = pytrec_eval.RelevanceEvaluator(
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return metrics
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def run_evaluation(dataset, postfix):
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global current_dataset, queries, model
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current_dataset = dataset
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input_texts = [f"query: {query.strip()} {postfix}".strip() for query in queries[current_dataset]]
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q_reps = model.encode(input_texts)
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all_scores, psg_indices = search_queries(dataset, q_reps)
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results = {qid: dict(zip(doc_ids, map(float, scores)))
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"Recall@100": metrics["Recall@100"]
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}
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@spaces.GPU
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def gradio_interface(dataset, postfix):
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return run_evaluation(dataset, postfix)
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if model is None:
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model = RepLlamaModel(model_name_or_path=CUR_MODEL)
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load_corpus_lookups(current_dataset)
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load_queries(current_dataset)
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# Create Gradio interface
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iface = gr.Interface(
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fn=gradio_interface,
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