Dockerfile

FROM python:3.11-slim

# ── System dependencies ───────────────────────────────────────
RUN apt-get update && apt-get install -y --no-install-recommends \
        build-essential \
        r-base \
        r-base-dev \
        libcurl4-openssl-dev \
        libssl-dev \
        libxml2-dev \
        libzmq3-dev \
        git \
        wget \
    && rm -rf /var/lib/apt/lists/*

# ── Python dependencies (includes jupyter for IRkernel::installspec) ──
COPY requirements.txt /tmp/requirements.txt
RUN pip install --no-cache-dir -r /tmp/requirements.txt

# ── R packages (jupyter is now on PATH, installspec will work) ────────
RUN Rscript -e " \
    install.packages('pbdZMQ',    repos='https://cloud.r-project.org', quiet=FALSE); \
    stopifnot(requireNamespace('pbdZMQ')); \
    install.packages('IRdisplay', repos='https://cloud.r-project.org', quiet=FALSE); \
    install.packages('IRkernel',  repos='https://cloud.r-project.org', quiet=FALSE); \
    stopifnot(requireNamespace('IRkernel')); \
    IRkernel::installspec(user=FALSE); \
    install.packages('dplyr',     repos='https://cloud.r-project.org', quiet=FALSE); \
    cat('R setup complete\n') \
"

# ── App ───────────────────────────────────────────────────────
WORKDIR /app
COPY . /app

RUN mkdir -p artifacts/py/figures artifacts/py/tables \
             artifacts/r/figures  artifacts/r/tables  \
             runs

# ── HuggingFace: non-root user ────────────────────────────────
RUN useradd -m -u 1000 appuser && chown -R appuser /app
USER appuser

EXPOSE 7860
ENV GRADIO_SERVER_NAME="0.0.0.0"
ENV GRADIO_SERVER_PORT="7860"

CMD ["python", "app.py"]