Update script_for_automation.py

script_for_automation.py

@@ -480,6 +480,16 @@ def drive_process():
             gold_standard_interactions_json = json.loads(gold_standard_json["interactions"])
             gold_standard_trials_json = json.loads(gold_standard_json["trials"])
 
+               
+            # Convert to yaml
+            completed_gold_standard_planting_json = sanitize_json_for_yaml(gold_standard_planting_json)
+            completed_gold_standard_interactions_json = sanitize_json_for_yaml(gold_standard_interactions_json)
+            completed_gold_standard_trials_json = sanitize_json_for_yaml(gold_standard_trials_json)
+
+            completed_processed_farm_activity_json = sanitize_json_for_yaml(processed_farm_activity_json)
+            completed_processed_interactions_json = sanitize_json_for_yaml(processed_interactions_json)
+            completed_processed_trials_json = sanitize_json_for_yaml(processed_trials_json)
+
             
             print("PROCESSING SPECIFICATIONS!!!!!!!!!!!!!!!")
             #processed_farm_activity_json, processed_interactions_json, processed_trials_json = process_specifications(proc_spec)