Update script_for_automation.py

script_for_automation.py

@@ -408,8 +408,8 @@ def generate_markdown_output(df):
     for _, row in df.iterrows():
         markdown += f"\n### Recipe ID: {row['Recipe_ID']}\n"
         for key in ["planting", "interactions", "trials"]:
-            gold = yaml.dumps(row['Gold_Standard_JSON'].get(key, {}), indent=2)
-            machine = yaml.dumps(row['Machine_Generated_JSON'].get(key, {}), indent=2)
+            gold = yaml.dump(row['Gold_Standard_JSON'].get(key, {}), default_flow_style=False, sort_keys=True)
+            machine = yaml.dump(row['Machine_Generated_JSON'].get(key, {}), default_flow_style=False, sort_keys=True)
             markdown += f"#### {key.capitalize()}\n"
             markdown += "| Type | YAML Content |\n"
             markdown += "|------|--------------|\n"