File size: 3,073 Bytes
233f6d4 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 | Clazz.declarePackage ("JSV.source");
Clazz.load (["JSV.source.JDXHeader"], "JSV.source.JDXSource", ["JU.Lst"], function () {
c$ = Clazz.decorateAsClass (function () {
this.type = 0;
this.isCompoundSource = false;
this.jdxSpectra = null;
this.errors = "";
this.filePath = null;
this.peakCount = 0;
this.isView = false;
Clazz.instantialize (this, arguments);
}, JSV.source, "JDXSource", JSV.source.JDXHeader);
Clazz.defineMethod (c$, "dispose",
function () {
this.headerTable = null;
this.jdxSpectra = null;
});
Clazz.makeConstructor (c$,
function (type, filePath) {
Clazz.superConstructor (this, JSV.source.JDXSource, []);
this.type = type;
this.setFilePath (filePath);
this.headerTable = new JU.Lst ();
this.jdxSpectra = new JU.Lst ();
this.isCompoundSource = (type != 0);
}, "~N,~S");
Clazz.defineMethod (c$, "getJDXSpectrum",
function (index) {
return (this.jdxSpectra.size () <= index ? null : this.jdxSpectra.get (index));
}, "~N");
Clazz.defineMethod (c$, "addJDXSpectrum",
function (filePath, spectrum, forceSub) {
if (filePath == null) filePath = this.filePath;
spectrum.setFilePath (filePath);
var n = this.jdxSpectra.size ();
if (n == 0 || !this.jdxSpectra.get (n - 1).addSubSpectrum (spectrum, forceSub)) this.jdxSpectra.addLast (spectrum);
}, "~S,JSV.common.Spectrum,~B");
Clazz.defineMethod (c$, "getNumberOfSpectra",
function () {
return this.jdxSpectra.size ();
});
Clazz.defineMethod (c$, "getSpectra",
function () {
return this.jdxSpectra;
});
Clazz.defineMethod (c$, "getSpectraAsArray",
function () {
return (this.jdxSpectra == null ? null : this.jdxSpectra.toArray ());
});
Clazz.defineMethod (c$, "getErrorLog",
function () {
return this.errors;
});
Clazz.defineMethod (c$, "setErrorLog",
function (errors) {
this.errors = errors;
}, "~S");
Clazz.defineMethod (c$, "setFilePath",
function (filePath) {
this.filePath = filePath;
}, "~S");
Clazz.defineMethod (c$, "getFilePath",
function () {
return this.filePath;
});
c$.createView = Clazz.defineMethod (c$, "createView",
function (specs) {
var source = new JSV.source.JDXSource (-2, "view");
source.isView = true;
for (var i = 0; i < specs.size (); i++) source.addJDXSpectrum (specs.get (i).getFilePath (), specs.get (i), false);
return source;
}, "JU.Lst");
Clazz.defineMethod (c$, "getHeaderRowDataAsArray",
function (addDataClass, rowData) {
if (rowData == null) rowData = Clazz.newArray (0, 0, null);
var data = this.getHeaderRowDataAsArray (addDataClass, rowData.length);
for (var i = rowData.length; --i >= 0; ) data[data.length - rowData.length + i] = rowData[i];
return data;
}, "~B,~A");
Clazz.defineMethod (c$, "setID",
function (id) {
this.jdxSpectra.get (0).sourceID = id;
}, "~S");
Clazz.defineMethod (c$, "matchesFilePath",
function (filePath) {
return this.filePath.equals (filePath) || this.filePath.$replace ('\\', '/').equals (filePath);
}, "~S");
Clazz.defineStatics (c$,
"TYPE_VIEW", -2,
"TYPE_UNKNOWN", -1,
"TYPE_SIMPLE", 0,
"TYPE_BLOCK", 1,
"TYPE_NTUPLE", 2);
});
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