Clazz.declarePackage ("JM"); Clazz.load (null, "JM.LabelToken", ["java.lang.Float", "java.util.Hashtable", "JU.AU", "$.Lst", "$.PT", "$.SB", "$.T3", "JS.SV", "$.T", "JU.Edge", "JV.JC"], function () { c$ = Clazz.decorateAsClass (function () { this.text = null; this.key = null; this.data = null; this.tok = 0; this.pt = -1; this.ch1 = '\0'; this.width = 0; this.precision = 2147483647; this.alignLeft = false; this.zeroPad = false; this.intAsFloat = false; Clazz.instantialize (this, arguments); }, JM, "LabelToken"); Clazz.makeConstructor (c$, function () { }); Clazz.defineMethod (c$, "set", function (text, pt) { this.text = text; this.pt = pt; return this; }, "~S,~N"); c$.isLabelPropertyTok = Clazz.defineMethod (c$, "isLabelPropertyTok", function (tok) { for (var i = JM.LabelToken.labelTokenIds.length; --i >= 0; ) if (JM.LabelToken.labelTokenIds[i] == tok) return true; return false; }, "~N"); c$.compile = Clazz.defineMethod (c$, "compile", function (vwr, strFormat, chAtom, htValues) { if (strFormat == null || strFormat.length == 0) return null; if (strFormat.indexOf ("%") < 0 || strFormat.length < 2) return Clazz.newArray (-1, [ new JM.LabelToken ().set (strFormat, -1)]); var n = 0; var ich = -1; var cch = strFormat.length; while (++ich < cch && (ich = strFormat.indexOf ('%', ich)) >= 0) n++; var tokens = new Array (n * 2 + 1); var ichPercent; var i = 0; for (ich = 0; (ichPercent = strFormat.indexOf ('%', ich)) >= 0; ) { if (ich != ichPercent) tokens[i++] = new JM.LabelToken ().set (strFormat.substring (ich, ichPercent), -1); var lt = tokens[i++] = new JM.LabelToken ().set (null, ichPercent); vwr.autoCalculate (lt.tok, null); ich = JM.LabelToken.setToken (vwr, strFormat, lt, cch, chAtom.charCodeAt (0), htValues); } if (ich < cch) tokens[i++] = new JM.LabelToken ().set (strFormat.substring (ich), -1); return tokens; }, "JV.Viewer,~S,~S,java.util.Map"); Clazz.defineMethod (c$, "formatLabel", function (vwr, atom, strFormat, ptTemp) { return (strFormat == null || strFormat.length == 0 ? null : JM.LabelToken.formatLabelAtomArray (vwr, atom, JM.LabelToken.compile (vwr, strFormat, '\0', null), '\0', null, ptTemp)); }, "JV.Viewer,JM.Atom,~S,JU.P3"); c$.formatLabelAtomArray = Clazz.defineMethod (c$, "formatLabelAtomArray", function (vwr, atom, tokens, chAtom, indices, ptTemp) { if (atom == null) return null; var strLabel = (chAtom > '0' ? null : new JU.SB ()); if (tokens != null) for (var i = 0; i < tokens.length; i++) { var t = tokens[i]; if (t == null) break; if (chAtom > '0' && t.ch1 != chAtom) continue; if (t.tok <= 0 || t.key != null) { if (strLabel != null) { strLabel.append (t.text); if (t.ch1 != '\0') strLabel.appendC (t.ch1); }} else { JM.LabelToken.appendAtomTokenValue (vwr, atom, t, strLabel, indices, ptTemp); }} return (strLabel == null ? null : strLabel.toString ().intern ()); }, "JV.Viewer,JM.Atom,~A,~S,~A,JU.P3"); c$.getBondLabelValues = Clazz.defineMethod (c$, "getBondLabelValues", function () { var htValues = new java.util.Hashtable (); htValues.put ("#", ""); htValues.put ("ORDER", ""); htValues.put ("TYPE", ""); htValues.put ("LENGTH", Float.$valueOf (0)); htValues.put ("ENERGY", Float.$valueOf (0)); return htValues; }); c$.formatLabelBond = Clazz.defineMethod (c$, "formatLabelBond", function (vwr, bond, tokens, values, indices, ptTemp) { values.put ("#", "" + (bond.index + 1)); values.put ("ORDER", "" + JU.Edge.getBondOrderNumberFromOrder (bond.order)); values.put ("TYPE", JU.Edge.getBondOrderNameFromOrder (bond.order)); values.put ("LENGTH", Float.$valueOf (bond.atom1.distance (bond.atom2))); values.put ("ENERGY", Float.$valueOf (bond.getEnergy ())); JM.LabelToken.setValues (tokens, values); JM.LabelToken.formatLabelAtomArray (vwr, bond.atom1, tokens, '1', indices, ptTemp); JM.LabelToken.formatLabelAtomArray (vwr, bond.atom2, tokens, '2', indices, ptTemp); return JM.LabelToken.getLabel (tokens); }, "JV.Viewer,JM.Bond,~A,java.util.Map,~A,JU.P3"); c$.formatLabelMeasure = Clazz.defineMethod (c$, "formatLabelMeasure", function (vwr, m, label, value, units) { var htValues = new java.util.Hashtable (); htValues.put ("#", "" + (m.index + 1)); htValues.put ("VALUE", Float.$valueOf (value)); htValues.put ("UNITS", units); var tokens = JM.LabelToken.compile (vwr, label, '\1', htValues); if (tokens == null) return ""; JM.LabelToken.setValues (tokens, htValues); var atoms = m.ms.at; var indices = m.countPlusIndices; for (var i = indices[0]; i >= 1; --i) if (indices[i] >= 0) JM.LabelToken.formatLabelAtomArray (vwr, atoms[indices[i]], tokens, String.fromCharCode (48 + i), null, null); label = JM.LabelToken.getLabel (tokens); return (label == null ? "" : label); }, "JV.Viewer,JM.Measurement,~S,~N,~S"); c$.setValues = Clazz.defineMethod (c$, "setValues", function (tokens, values) { for (var i = 0; i < tokens.length; i++) { var lt = tokens[i]; if (lt == null) break; if (lt.key == null) continue; var value = values.get (lt.key); lt.text = (Clazz.instanceOf (value, Float) ? lt.format ((value).floatValue (), null, null) : lt.format (NaN, value, null)); } }, "~A,java.util.Map"); c$.getLabel = Clazz.defineMethod (c$, "getLabel", function (tokens) { var sb = new JU.SB (); for (var i = 0; i < tokens.length; i++) { var lt = tokens[i]; if (lt == null) break; sb.append (lt.text); } return sb.toString (); }, "~A"); c$.setToken = Clazz.defineMethod (c$, "setToken", function (vwr, strFormat, lt, cch, chAtom, htValues) { var ich = lt.pt + 1; if (ich >= cch) { lt.text = "%"; return ich; }var ch; if (strFormat.charAt (ich) == '-') { lt.alignLeft = true; ++ich; }if (ich < cch && strFormat.charAt (ich) == '0') { lt.zeroPad = true; ++ich; }while (ich < cch && JU.PT.isDigit (ch = strFormat.charAt (ich))) { lt.width = (10 * lt.width) + (ch.charCodeAt (0) - 48); ++ich; } lt.precision = 2147483647; var isNegative = false; if (ich < cch && strFormat.charAt (ich) == '.') { ++ich; if (ich < cch && (ch = strFormat.charAt (ich)) == '-') { isNegative = true; ++ich; }if (ich < cch && JU.PT.isDigit (ch = strFormat.charAt (ich))) { lt.precision = ch.charCodeAt (0) - 48; if (isNegative) lt.precision = -1 - lt.precision; ++ich; }}if (ich < cch && htValues != null) for (var key, $key = htValues.keySet ().iterator (); $key.hasNext () && ((key = $key.next ()) || true);) if (strFormat.indexOf (key) == ich) return ich + (lt.key = key).length; if (ich < cch) switch (ch = strFormat.charAt (ich++)) { case '%': lt.text = "%"; return ich; case '[': var ichClose = strFormat.indexOf (']', ich); if (ichClose < ich) { ich = cch; break; }var propertyName = strFormat.substring (ich, ichClose).toLowerCase (); if (propertyName.startsWith ("property_")) { lt.tok = 134221834; lt.data = vwr.getDataObj (propertyName, null, 1); } else if (propertyName.startsWith ("validation.")) { lt.tok = 1073742189; lt.data = vwr.getDataObj ("property_" + propertyName.substring (11), null, 1); } else if (propertyName.startsWith ("unitid")) { lt.tok = 1073741974; lt.data = Integer.$valueOf (JV.JC.getUnitIDFlags (propertyName.substring (6))); } else { var token = JS.T.getTokenFromName (propertyName); if (token != null && JM.LabelToken.isLabelPropertyTok (token.tok)) lt.tok = token.tok; }ich = ichClose + 1; break; case '{': var ichCloseBracket = strFormat.indexOf ('}', ich); if (ichCloseBracket < ich) { ich = cch; break; }var s = strFormat.substring (ich, ichCloseBracket); lt.data = vwr.getDataObj (s, null, 1); if (lt.data == null) { lt.data = vwr.getDataObj (s, null, -1); if (lt.data != null) { lt.data = (lt.data)[1]; if (Clazz.instanceOf (lt.data, String)) lt.data = JU.PT.split (lt.data, "\n"); if (!(JU.AU.isAS (lt.data))) lt.data = null; }if (lt.data == null) { lt.tok = 1715472409; lt.data = s; } else { lt.tok = 1275068418; }} else { lt.tok = 134221834; }ich = ichCloseBracket + 1; break; default: var i; var i1; if (ich < cch && (i = "fuv".indexOf (ch)) >= 0 && (i1 = "xyz".indexOf (strFormat.charAt (ich))) >= 0) { lt.tok = JM.LabelToken.twoCharLabelTokenIds[i * 3 + i1]; ich++; } else if ((i = "AaBbCcDEefGgIiLlMmNnOoPpQqRrSsTtUuVvWXxxYyyZzz%%%gqW".indexOf (ch)) >= 0) { lt.tok = JM.LabelToken.labelTokenIds[i]; }} lt.text = strFormat.substring (lt.pt, ich); if (ich < cch && chAtom != 0 && JU.PT.isDigit (ch = strFormat.charAt (ich))) { ich++; lt.ch1 = ch; if (ch.charCodeAt (0) != chAtom && chAtom != 1) lt.tok = 0; }return ich; }, "JV.Viewer,~S,JM.LabelToken,~N,~N,java.util.Map"); c$.appendAtomTokenValue = Clazz.defineMethod (c$, "appendAtomTokenValue", function (vwr, atom, t, strLabel, indices, ptTemp) { var strT = null; var floatT = NaN; var ptT = null; try { switch (t.tok) { case 1094713347: strT = "" + (indices == null ? atom.i : indices[atom.i]); break; case 1765808134: ptT = atom.atomPropertyTuple (vwr, t.tok, ptTemp); break; case 1073741974: strT = atom.getUnitID ((t.data).intValue ()); break; case 134221834: case 1073742189: if (t.data != null) { floatT = (t.data)[atom.i]; if (t.tok == 1073742189 && floatT != 1 && floatT != 0) { var o = vwr.getAtomValidation (t.text.substring (13, t.text.length - 1), atom); if (o == null) { System.out.println ("?? o is null ??"); } else if (o.size () == 1) { floatT = o.get (0).floatValue (); } else { floatT = NaN; strT = ""; for (var i = 0, n = o.size (); i < n; i++) { strT += "," + o.get (i); } if (strT.length > 1) strT = strT.substring (1); }}}break; case 1715472409: var data = vwr.ms.getInfo (atom.mi, t.data); var iatom = atom.i - vwr.ms.am[atom.mi].firstAtomIndex; var o = null; if (iatom >= 0) if ((Clazz.instanceOf (data, Array))) { var sdata = data; o = (iatom < sdata.length ? sdata[iatom] : null); } else if (Clazz.instanceOf (data, JU.Lst)) { var list = data; o = (iatom < list.size () ? JS.SV.oValue (list.get (iatom)) : null); }if (o == null) { strT = ""; } else if (Clazz.instanceOf (o, Float)) { floatT = (o).floatValue (); } else if (Clazz.instanceOf (o, Integer)) { floatT = (o).intValue (); } else if (Clazz.instanceOf (o, JU.T3)) { ptT = o; } else { strT = o.toString (); }break; case 1275068418: if (t.data != null) { var sdata = t.data; strT = (atom.i < sdata.length ? sdata[atom.i] : ""); }break; case 1631586315: var formalCharge = atom.getFormalCharge (); strT = (formalCharge > 0 ? "" + formalCharge + "+" : formalCharge < 0 ? "" + -formalCharge + "-" : ""); break; case 1094717454: strT = atom.getModelNumberForLabel (); break; case 1128269825: strT = "" + atom.atomPropertyInt (t.tok); break; case 1665140738: floatT = atom.atomPropertyFloat (vwr, t.tok, ptTemp); break; case 1086324749: strT = atom.group.getStructureId (); break; case 1094713367: var id = atom.group.getStrucNo (); strT = (id <= 0 ? "" : "" + id); break; case 1111490574: if (Float.isNaN (floatT = atom.group.getGroupParameter (1111490574))) strT = "null"; break; case 1111492626: case 1111492627: case 1111492628: case 1111490583: case 1111490584: case 1111490585: case 1111490586: floatT = atom.atomPropertyFloat (vwr, t.tok, ptTemp); if (Float.isNaN (floatT)) strT = ""; break; case 1073877011: strT = vwr.getNBOAtomLabel (atom); break; case 1086324747: case 1639976963: case 1237320707: strT = atom.atomPropertyString (vwr, t.tok); break; case 1140850705: strT = atom.getIdentityXYZ (false, ptTemp); break; case 79: strT = atom.getSymmetryOperatorList (false); break; case 81: floatT = atom.getOccupancy100 () / 100; break; default: switch (t.tok & 1136656384) { case 1094713344: if (t.intAsFloat) floatT = atom.atomPropertyInt (t.tok); else strT = "" + atom.atomPropertyInt (t.tok); break; case 1111490560: floatT = atom.atomPropertyFloat (vwr, t.tok, ptTemp); break; case 1086324736: strT = atom.atomPropertyString (vwr, t.tok); break; case 1077936128: ptT = atom.atomPropertyTuple (vwr, t.tok, ptTemp); if (ptT == null) strT = ""; break; default: } } } catch (ioobe) { if (Clazz.exceptionOf (ioobe, IndexOutOfBoundsException)) { floatT = NaN; strT = null; ptT = null; } else { throw ioobe; } } strT = t.format (floatT, strT, ptT); if (strLabel == null) t.text = strT; else strLabel.append (strT); }, "JV.Viewer,JM.Atom,JM.LabelToken,JU.SB,~A,JU.P3"); Clazz.defineMethod (c$, "format", function (floatT, strT, ptT) { if (!Float.isNaN (floatT)) { return JU.PT.formatF (floatT, this.width, this.precision, this.alignLeft, this.zeroPad); } else if (strT != null) { return JU.PT.formatS (strT, this.width, this.precision, this.alignLeft, this.zeroPad); } else if (ptT != null) { if (this.width == 0 && this.precision == 2147483647) { this.width = 6; this.precision = 2; }return JU.PT.formatF (ptT.x, this.width, this.precision, false, false) + JU.PT.formatF (ptT.y, this.width, this.precision, false, false) + JU.PT.formatF (ptT.z, this.width, this.precision, false, false); } else { return this.text; }}, "~N,~S,JU.T3"); Clazz.defineStatics (c$, "labelTokenParams", "AaBbCcDEefGgIiLlMmNnOoPpQqRrSsTtUuVvWXxxYyyZzz%%%gqW", "labelTokenIds", Clazz.newIntArray (-1, [1086324739, 1086326786, 1086326785, 1111492620, 1631586315, 1086326788, 1094713347, 1086324746, 1086326789, 1111490569, 1094713357, 1094713361, 1111492618, 1094715393, 1094713363, 1094715402, 1094717454, 1086324743, 1094713360, 1086324742, 79, 1088421903, 1111492619, 1111490570, 81, 1128269825, 1094715412, 1086324747, 1094713366, 1086326788, 1111490574, 1111492620, 1086324745, 1111490575, 1648363544, 1145047055, 1140850705, 1111492612, 1111492609, 1111492629, 1111492613, 1111492610, 1111492630, 1111492614, 1111492611, 1111492631, 1114249217, 1112152066, 1112150019, 1112150020, 1112150021, 1112152070, 1112152071, 1112152073, 1112152074, 1112152076, 1649022989, 1112152078, 1111490561, 1111490562, 1094713346, 1228931587, 1765808134, 1094713356, 1111490564, 1228935687, 1287653388, 1825200146, 1111490567, 1094713359, 1111490565, 1111490568, 1094713362, 1715472409, 1665140738, 1113589787, 1086324748, 1086324744, 1112152075, 1639976963, 1237320707, 1094713367, 1086324749, 1086326798, 1111490576, 1111490577, 1111490578, 1111490579, 1094715417, 1648361473, 1111492626, 1111492627, 1111492628, 1312817669, 1145045006, 1145047051, 1145047050, 1145047053, 1111492615, 1111492616, 1111492617, 1113589786, 1111490571, 1111490572, 1111490573, 1145047052, 1111490566, 1111490563, 1094713351, 1094713365, 1111490583, 1111490584, 1111490585, 1111490586, 1145045008, 1296041986, 1073877011, 1086324752, 1086324753]), "STANDARD_LABEL", "%[identify]", "twoCharLabelTokenParams", "fuv", "twoCharLabelTokenIds", Clazz.newIntArray (-1, [1111492612, 1111492613, 1111492614, 1111490577, 1111490578, 1111490579, 1111492626, 1111492627, 1111492628])); });