Update app.py
Browse files
app.py
CHANGED
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@@ -8,19 +8,15 @@ import time
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import psutil
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import optuna
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import ast
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import pandas as pd
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import numpy as np
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from sklearn.model_selection import train_test_split
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from sklearn.
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from sklearn.
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from sklearn.pipeline import Pipeline
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from sklearn.ensemble import RandomForestClassifier, GradientBoostingClassifier
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from sklearn.metrics import accuracy_score, precision_score, recall_score, f1_score, classification_report
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import matplotlib.pyplot as plt
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import seaborn as sns
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import shap
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import lime
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from lime import lime_tabular
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# Authenticate Hugging Face
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hf_token = os.getenv("HF_TOKEN")
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@@ -29,13 +25,51 @@ login(token=hf_token, add_to_git_credential=True)
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# Initialize Model
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model = HfApiModel("mistralai/Mixtral-8x7B-Instruct-v0.1", token=hf_token)
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def format_analysis_report(raw_output, visuals):
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try:
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analysis_dict = raw_output if isinstance(raw_output, dict) else ast.literal_eval(str(raw_output))
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report = f"""
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<div style="font-family: Arial, sans-serif; padding: 20px; color: #333;">
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<h1 style="color: #2B547E; border-bottom: 2px solid #2B547E; padding-bottom: 10px;">📊 Data Analysis Report</h1>
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<div style="margin-top: 25px; background: #f8f9fa; padding: 20px; border-radius: 8px;">
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<h2 style="color: #2B547E;">🔍 Key Observations</h2>
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{format_observations(analysis_dict.get('observations', {}))}
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@@ -44,77 +78,90 @@ def format_analysis_report(raw_output, visuals):
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<h2 style="color: #2B547E;">💡 Insights & Visualizations</h2>
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{format_insights(analysis_dict.get('insights', {}), visuals)}
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</div>
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</div>
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"""
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return report, visuals
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except:
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return raw_output, visuals
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def
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</div>
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<div style="margin-top: 30px; background: #f8f9fa; padding: 20px; border-radius: 8px;">
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<h2 style="color: #2B547E;">🔄 Hyperparameters</h2>
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<pre style="margin: 0; padding: 15px; background: white; border-radius: 8px; box-shadow: 0 2px 4px rgba(0,0,0,0.05);">{metrics_dict.get('best_params', 'N/A')}</pre>
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</div>
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</div>
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"""
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return report
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def analyze_data(csv_file, additional_notes=""):
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start_time = time.time()
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process = psutil.Process(os.getpid())
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initial_memory = process.memory_info().rss / 1024 ** 2
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@@ -127,9 +174,35 @@ def analyze_data(csv_file, additional_notes=""):
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run = wandb.init(project="huggingface-data-analysis", config={
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"model": "mistralai/Mixtral-8x7B-Instruct-v0.1",
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"additional_notes": additional_notes,
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"source_file": csv_file.name if csv_file else None
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})
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agent = CodeAgent(tools=[], model=model, additional_authorized_imports=["numpy", "pandas", "matplotlib.pyplot", "seaborn"])
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analysis_result = agent.run("""
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You are an expert data analyst. Perform comprehensive analysis including:
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wandb.log({os.path.basename(viz): wandb.Image(viz)})
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run.finish()
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return format_analysis_report(analysis_result, visuals)
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def
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# Try to infer target column if it's not specified
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for col in ['target', 'label', 'class', 'outcome', 'y']:
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if col in data.columns:
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target_column = col
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break
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else:
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return None, None, None, None, None
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X = data.drop(target_column, axis=1)
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y = data[target_column]
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#
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X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.2, random_state=42)
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#
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# Basic preprocessing
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numeric_transformer = Pipeline(steps=[
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('scaler', StandardScaler())
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])
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categorical_transformer = Pipeline(steps=[
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('onehot', OneHotEncoder(handle_unknown='ignore'))
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])
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])
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#
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# Create interaction terms between numerical features
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for i, col1 in enumerate(numerical_cols):
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for col2 in numerical_cols[i+1:]:
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if len(numerical_cols) > 1:
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X_train[f'{col1}_{col2}_interaction'] = X_train[col1] * X_train[col2]
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X_test[f'{col1}_{col2}_interaction'] = X_test[col1] * X_test[col2]
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# Create polynomial features for numerical columns (quadratic terms)
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for col in numerical_cols:
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X_train[f'{col}_squared'] = X_train[col] ** 2
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X_test[f'{col}_squared'] = X_test[col] ** 2
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# Create aggregate features for categorical columns
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for col in categorical_cols:
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# For each categorical column, calculate mean of numerical columns grouped by categories
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for num_col in numerical_cols:
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if num_col in X_train.columns:
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agg_map = X_train.groupby(col)[num_col].mean().to_dict()
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X_train[f'{col}_{num_col}_agg'] = X_train[col].map(agg_map)
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X_test[f'{col}_{num_col}_agg'] = X_test[col].map(agg_map)
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return X_train, X_test, y_train, y_test, preprocessor
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def
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shap_values = explainer.shap_values(X_test)
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# Handle multi-class case
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if isinstance(shap_values, list):
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shap_values = shap_values[1] # Use the positive class
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# Fallback for non-tree models
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explainer = shap.KernelExplainer(model.predict_proba, shap.sample(X_test, 50))
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shap_values = explainer.shap_values(X_test[:50])
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# Handle multi-class case
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if isinstance(shap_values, list):
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shap_values = shap_values[1] # Use the positive class
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plt.savefig(file_path)
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plt.close()
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return file_path
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def create_lime_explanation(model, X_train, X_test, feature_names):
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"""Create LIME explanation for a sample instance"""
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# Create LIME explainer
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explainer = lime_tabular.LimeTabularExplainer(
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X_train,
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feature_names=feature_names,
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class_names=["Negative", "Positive"],
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mode="classification"
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)
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# Explain a sample instance
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instance_idx = 0
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exp = explainer.explain_instance(
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X_test[instance_idx],
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model.predict_proba,
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num_features=10
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)
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# Plot explanation
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plt.figure(figsize=(10, 6))
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exp.as_pyplot_figure()
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plt.tight_layout()
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file_path = './figures/lime_explanation.png'
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plt.savefig(file_path)
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plt.close()
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return file_path
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def create_feature_importance_plot(model, feature_names):
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"""Create feature importance plot if model supports it"""
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if hasattr(model, 'feature_importances_'):
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importances = model.feature_importances_
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indices = np.argsort(importances)[-20:] # Top 20 features
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plt.figure(figsize=(12, 8))
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plt.title('Feature Importances')
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plt.barh(range(len(indices)), importances[indices], align='center')
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plt.yticks(range(len(indices)), [feature_names[i] for i in indices])
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plt.xlabel('Relative Importance')
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plt.tight_layout()
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file_path = './figures/feature_importance.png'
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plt.savefig(file_path)
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plt.close()
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return file_path
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return None
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def train_and_evaluate_model(csv_file, target_column, model_type, feature_eng_enabled=True, explainer_type="shap"):
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"""Train, evaluate model with metrics and explainability"""
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if not csv_file:
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return "Please upload a CSV file", None, []
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# Load data
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try:
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data = pd.read_csv(csv_file)
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except Exception as e:
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return f"Error loading data: {str(e)}", None, []
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# Preprocess data
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X_train, X_test, y_train, y_test, preprocessor = preprocess_features(
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data, target_column, feature_engineering=feature_eng_enabled
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)
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if X_train is None:
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return f"Error: Could not identify target column '{target_column}'", None, []
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# Apply preprocessing
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X_train_processed = X_train
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X_test_processed = X_test
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# Select model
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if model_type == "random_forest":
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model = RandomForestClassifier(random_state=42)
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else: # Default to gradient boosting
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model = GradientBoostingClassifier(random_state=42)
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# Train model
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model.fit(X_train_processed, y_train)
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# Make predictions
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y_pred = model.predict(X_test_processed)
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# Calculate metrics
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metrics = {
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'accuracy': accuracy_score(y_test, y_pred),
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'precision': precision_score(y_test, y_pred, average='weighted'),
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'recall': recall_score(y_test, y_pred, average='weighted'),
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'f1': f1_score(y_test, y_pred, average='weighted'),
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}
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# Generate feature names
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feature_names = X_train_processed.columns.tolist()
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# Create feature importance plot
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feature_importance_path = create_feature_importance_plot(model, feature_names)
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# Create explainability visualization
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explainability_path = None
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if explainer_type == "shap":
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explainability_path = create_shap_plot(model, X_test_processed, feature_names)
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else: # LIME
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explainability_path = create_lime_explanation(model, X_train_processed.values,
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X_test_processed.values, feature_names)
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# Log to wandb
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wandb.login(key=os.environ.get('WANDB_API_KEY'))
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run = wandb.init(project="huggingface-model-evaluation", config={
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"model_type": model_type,
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"feature_engineering": feature_eng_enabled,
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"explainer": explainer_type,
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"metrics": metrics
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})
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wandb.log(metrics)
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if feature_importance_path:
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wandb.log({"feature_importance": wandb.Image(feature_importance_path)})
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if explainability_path:
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wandb.log({"explainability": wandb.Image(explainability_path)})
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run.finish()
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# Return results
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results = [feature_importance_path, explainability_path] if feature_importance_path and explainability_path else []
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return format_model_evaluation(metrics, feature_importance_path, explainability_path), None, results
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def objective(trial, csv_file, target_column, model_type, feature_eng_enabled=True):
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"""Objective function for Optuna hyperparameter optimization"""
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try:
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# Load data
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data = pd.read_csv(csv_file)
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# Preprocess data
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X_train, X_test, y_train, y_test, preprocessor = preprocess_features(
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data, target_column, feature_engineering=feature_eng_enabled
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)
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if X_train is None:
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return 0.0
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# Apply preprocessing
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X_train_processed = X_train
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X_test_processed = X_test
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# Hyperparameters based on model type
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if model_type == "random_forest":
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model = RandomForestClassifier(
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n_estimators=trial.suggest_int("n_estimators", 50, 500),
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max_depth=trial.suggest_int("max_depth", 3, 20),
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min_samples_split=trial.suggest_int("min_samples_split", 2, 10),
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min_samples_leaf=trial.suggest_int("min_samples_leaf", 1, 4),
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| 404 |
-
bootstrap=trial.suggest_categorical("bootstrap", [True, False]),
|
| 405 |
-
random_state=42
|
| 406 |
-
)
|
| 407 |
-
else: # Gradient Boosting
|
| 408 |
-
model = GradientBoostingClassifier(
|
| 409 |
-
learning_rate=trial.suggest_float("learning_rate", 0.01, 0.3),
|
| 410 |
-
n_estimators=trial.suggest_int("n_estimators", 50, 500),
|
| 411 |
-
max_depth=trial.suggest_int("max_depth", 3, 10),
|
| 412 |
-
min_samples_split=trial.suggest_int("min_samples_split", 2, 10),
|
| 413 |
-
min_samples_leaf=trial.suggest_int("min_samples_leaf", 1, 4),
|
| 414 |
-
subsample=trial.suggest_float("subsample", 0.6, 1.0),
|
| 415 |
-
random_state=42
|
| 416 |
-
)
|
| 417 |
-
|
| 418 |
-
# Train model
|
| 419 |
-
model.fit(X_train_processed, y_train)
|
| 420 |
-
|
| 421 |
-
# Evaluate model
|
| 422 |
-
y_pred = model.predict(X_test_processed)
|
| 423 |
-
f1 = f1_score(y_test, y_pred, average='weighted')
|
| 424 |
-
|
| 425 |
-
return f1
|
| 426 |
-
|
| 427 |
except Exception as e:
|
| 428 |
-
|
| 429 |
-
return 0.0
|
| 430 |
-
|
| 431 |
-
def tune_hyperparameters(csv_file, target_column, model_type, n_trials=10, feature_eng_enabled=True):
|
| 432 |
-
"""Run hyperparameter tuning with Optuna"""
|
| 433 |
-
if not csv_file:
|
| 434 |
-
return "Please upload a CSV file first"
|
| 435 |
-
|
| 436 |
-
wandb.login(key=os.environ.get('WANDB_API_KEY'))
|
| 437 |
-
run = wandb.init(project="huggingface-hyperparameter-tuning", config={
|
| 438 |
-
"model_type": model_type,
|
| 439 |
-
"feature_engineering": feature_eng_enabled,
|
| 440 |
-
"n_trials": n_trials
|
| 441 |
-
})
|
| 442 |
-
|
| 443 |
-
study = optuna.create_study(direction="maximize")
|
| 444 |
-
study.optimize(
|
| 445 |
-
lambda trial: objective(trial, csv_file, target_column, model_type, feature_eng_enabled),
|
| 446 |
-
n_trials=n_trials
|
| 447 |
-
)
|
| 448 |
-
|
| 449 |
-
# Log best parameters to wandb
|
| 450 |
-
wandb.log({"best_params": study.best_params, "best_value": study.best_value})
|
| 451 |
-
|
| 452 |
-
# Visualization of optimization history
|
| 453 |
-
plt.figure(figsize=(10, 6))
|
| 454 |
-
optuna.visualization.matplotlib.plot_optimization_history(study)
|
| 455 |
-
plt.tight_layout()
|
| 456 |
-
history_path = './figures/optuna_history.png'
|
| 457 |
-
plt.savefig(history_path)
|
| 458 |
-
plt.close()
|
| 459 |
-
|
| 460 |
-
# Visualization of parameter importances
|
| 461 |
-
plt.figure(figsize=(10, 6))
|
| 462 |
-
optuna.visualization.matplotlib.plot_param_importances(study)
|
| 463 |
-
plt.tight_layout()
|
| 464 |
-
importance_path = './figures/optuna_importance.png'
|
| 465 |
-
plt.savefig(importance_path)
|
| 466 |
-
plt.close()
|
| 467 |
-
|
| 468 |
-
# Log visualizations
|
| 469 |
-
wandb.log({"optimization_history": wandb.Image(history_path)})
|
| 470 |
-
wandb.log({"parameter_importance": wandb.Image(importance_path)})
|
| 471 |
-
|
| 472 |
-
run.finish()
|
| 473 |
-
|
| 474 |
-
# Return a formatted result
|
| 475 |
-
result = f"""
|
| 476 |
-
<div style="font-family: Arial, sans-serif; padding: 20px; color: #333;">
|
| 477 |
-
<h1 style="color: #2B547E; border-bottom: 2px solid #2B547E; padding-bottom: 10px;">⚙️ Hyperparameter Optimization Results</h1>
|
| 478 |
-
|
| 479 |
-
<div style="margin-top: 25px; background: #f8f9fa; padding: 20px; border-radius: 8px;">
|
| 480 |
-
<h2 style="color: #2B547E;">🏆 Best Parameters</h2>
|
| 481 |
-
<pre style="margin: 10px 0; padding: 15px; background: white; border-radius: 8px; box-shadow: 0 2px 4px rgba(0,0,0,0.05);">{study.best_params}</pre>
|
| 482 |
-
|
| 483 |
-
<h3 style="color: #4A708B; margin-top: 20px;">Best F1 Score</h3>
|
| 484 |
-
<p style="font-size: 20px; font-weight: bold;">{study.best_value:.4f}</p>
|
| 485 |
-
</div>
|
| 486 |
-
|
| 487 |
-
<div style="margin-top: 30px;">
|
| 488 |
-
<h2 style="color: #2B547E;">📈 Optimization Results</h2>
|
| 489 |
-
<img src="/file={history_path}" style="max-width: 100%; height: auto; margin-top: 10px; border-radius: 6px; box-shadow: 0 2px 4px rgba(0,0,0,0.1);">
|
| 490 |
-
<img src="/file={importance_path}" style="max-width: 100%; height: auto; margin-top: 10px; border-radius: 6px; box-shadow: 0 2px 4px rgba(0,0,0,0.1);">
|
| 491 |
-
</div>
|
| 492 |
-
</div>
|
| 493 |
-
"""
|
| 494 |
-
|
| 495 |
-
# Return results and visualization paths for gallery
|
| 496 |
-
return result, [history_path, importance_path]
|
| 497 |
|
| 498 |
with gr.Blocks(theme=gr.themes.Soft()) as demo:
|
| 499 |
-
gr.Markdown("## 📊 AI Data Analysis
|
| 500 |
-
|
| 501 |
-
|
| 502 |
-
|
| 503 |
-
|
| 504 |
-
|
| 505 |
-
|
| 506 |
-
|
| 507 |
-
|
| 508 |
-
|
| 509 |
-
|
| 510 |
-
|
| 511 |
-
|
| 512 |
-
|
| 513 |
-
|
| 514 |
-
|
| 515 |
-
|
| 516 |
-
|
| 517 |
-
|
| 518 |
-
|
| 519 |
-
|
| 520 |
-
|
| 521 |
-
|
| 522 |
-
|
| 523 |
-
model_output = gr.HTML("### Model evaluation results will appear here...")
|
| 524 |
-
model_metrics = gr.Textbox(label="Raw Metrics", visible=False)
|
| 525 |
-
model_gallery = gr.Gallery(label="Model Visualizations", columns=2)
|
| 526 |
-
|
| 527 |
-
train_btn.click(
|
| 528 |
-
fn=train_and_evaluate_model,
|
| 529 |
-
inputs=[file_input_model, target_column, model_type, feature_eng, explainer_type],
|
| 530 |
-
outputs=[model_output, model_metrics, model_gallery]
|
| 531 |
-
)
|
| 532 |
-
|
| 533 |
-
with gr.Tab("Hyperparameter Tuning"):
|
| 534 |
-
with gr.Row():
|
| 535 |
-
with gr.Column():
|
| 536 |
-
file_input_hp = gr.File(label="Upload CSV Dataset", type="filepath")
|
| 537 |
-
target_column_hp = gr.Textbox(label="Target Column Name", placeholder="e.g., target, class, outcome")
|
| 538 |
-
model_type_hp = gr.Radio(["random_forest", "gradient_boosting"], label="Model Type", value="random_forest")
|
| 539 |
-
feature_eng_hp = gr.Checkbox(label="Enable Feature Engineering", value=True)
|
| 540 |
-
n_trials = gr.Slider(minimum=5, maximum=50, value=10, step=5, label="Number of Optimization Trials")
|
| 541 |
-
tune_btn = gr.Button("Run Hyperparameter Optimization", variant="primary")
|
| 542 |
-
with gr.Column():
|
| 543 |
-
hp_output = gr.HTML("### Hyperparameter tuning results will appear here...")
|
| 544 |
-
hp_gallery = gr.Gallery(label="Optimization Visualizations", columns=2)
|
| 545 |
-
|
| 546 |
-
tune_btn.click(
|
| 547 |
-
fn=tune_hyperparameters,
|
| 548 |
-
inputs=[file_input_hp, target_column_hp, model_type_hp, n_trials, feature_eng_hp],
|
| 549 |
-
outputs=[hp_output, hp_gallery]
|
| 550 |
-
)
|
| 551 |
|
| 552 |
demo.launch(debug=True)
|
|
|
|
| 8 |
import psutil
|
| 9 |
import optuna
|
| 10 |
import ast
|
| 11 |
+
import shap
|
| 12 |
+
import lime
|
| 13 |
+
import lime.lime_tabular
|
| 14 |
import pandas as pd
|
| 15 |
import numpy as np
|
| 16 |
+
from sklearn.metrics import accuracy_score, precision_score, recall_score, f1_score
|
| 17 |
from sklearn.model_selection import train_test_split
|
| 18 |
+
from sklearn.ensemble import RandomForestClassifier
|
| 19 |
+
from sklearn.preprocessing import StandardScaler, PolynomialFeatures
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 20 |
|
| 21 |
# Authenticate Hugging Face
|
| 22 |
hf_token = os.getenv("HF_TOKEN")
|
|
|
|
| 25 |
# Initialize Model
|
| 26 |
model = HfApiModel("mistralai/Mixtral-8x7B-Instruct-v0.1", token=hf_token)
|
| 27 |
|
| 28 |
+
def format_analysis_report(raw_output, visuals, metrics=None, explainability_plots=None):
|
| 29 |
try:
|
| 30 |
analysis_dict = raw_output if isinstance(raw_output, dict) else ast.literal_eval(str(raw_output))
|
| 31 |
|
| 32 |
+
metrics_section = ""
|
| 33 |
+
if metrics:
|
| 34 |
+
metrics_section = f"""
|
| 35 |
+
<div style="margin-top: 25px; background: #f8f9fa; padding: 20px; border-radius: 8px;">
|
| 36 |
+
<h2 style="color: #2B547E;">📈 Model Performance Metrics</h2>
|
| 37 |
+
<div style="display: grid; grid-template-columns: repeat(2, 1fr); gap: 15px;">
|
| 38 |
+
<div style="background: white; padding: 15px; border-radius: 8px; box-shadow: 0 2px 4px rgba(0,0,0,0.05);">
|
| 39 |
+
<h3 style="margin: 0 0 10px 0; color: #4A708B;">Accuracy</h3>
|
| 40 |
+
<p style="font-size: 24px; font-weight: bold; margin: 0;">{metrics['accuracy']:.2f}</p>
|
| 41 |
+
</div>
|
| 42 |
+
<div style="background: white; padding: 15px; border-radius: 8px; box-shadow: 0 2px 4px rgba(0,0,0,0.05);">
|
| 43 |
+
<h3 style="margin: 0 0 10px 0; color: #4A708B;">Precision</h3>
|
| 44 |
+
<p style="font-size: 24px; font-weight: bold; margin: 0;">{metrics['precision']:.2f}</p>
|
| 45 |
+
</div>
|
| 46 |
+
<div style="background: white; padding: 15px; border-radius: 8px; box-shadow: 0 2px 4px rgba(0,0,0,0.05);">
|
| 47 |
+
<h3 style="margin: 0 0 10px 0; color: #4A708B;">Recall</h3>
|
| 48 |
+
<p style="font-size: 24px; font-weight: bold; margin: 0;">{metrics['recall']:.2f}</p>
|
| 49 |
+
</div>
|
| 50 |
+
<div style="background: white; padding: 15px; border-radius: 8px; box-shadow: 0 2px 4px rgba(0,0,0,0.05);">
|
| 51 |
+
<h3 style="margin: 0 0 10px 0; color: #4A708B;">F1 Score</h3>
|
| 52 |
+
<p style="font-size: 24px; font-weight: bold; margin: 0;">{metrics['f1']:.2f}</p>
|
| 53 |
+
</div>
|
| 54 |
+
</div>
|
| 55 |
+
</div>
|
| 56 |
+
"""
|
| 57 |
+
|
| 58 |
+
explainability_section = ""
|
| 59 |
+
if explainability_plots:
|
| 60 |
+
explainability_section = f"""
|
| 61 |
+
<div style="margin-top: 25px; background: #f8f9fa; padding: 20px; border-radius: 8px;">
|
| 62 |
+
<h2 style="color: #2B547E;">🔍 Model Explainability</h2>
|
| 63 |
+
<div style="display: grid; grid-template-columns: repeat(2, 1fr); gap: 15px;">
|
| 64 |
+
{''.join([f'<img src="/file={plot}" style="max-width: 100%; height: auto; border-radius: 6px; box-shadow: 0 2px 4px rgba(0,0,0,0.1);">' for plot in explainability_plots])}
|
| 65 |
+
</div>
|
| 66 |
+
</div>
|
| 67 |
+
"""
|
| 68 |
+
|
| 69 |
report = f"""
|
| 70 |
<div style="font-family: Arial, sans-serif; padding: 20px; color: #333;">
|
| 71 |
<h1 style="color: #2B547E; border-bottom: 2px solid #2B547E; padding-bottom: 10px;">📊 Data Analysis Report</h1>
|
| 72 |
+
{metrics_section}
|
| 73 |
<div style="margin-top: 25px; background: #f8f9fa; padding: 20px; border-radius: 8px;">
|
| 74 |
<h2 style="color: #2B547E;">🔍 Key Observations</h2>
|
| 75 |
{format_observations(analysis_dict.get('observations', {}))}
|
|
|
|
| 78 |
<h2 style="color: #2B547E;">💡 Insights & Visualizations</h2>
|
| 79 |
{format_insights(analysis_dict.get('insights', {}), visuals)}
|
| 80 |
</div>
|
| 81 |
+
{explainability_section}
|
| 82 |
</div>
|
| 83 |
"""
|
| 84 |
return report, visuals
|
| 85 |
except:
|
| 86 |
return raw_output, visuals
|
| 87 |
|
| 88 |
+
def preprocess_data(df, feature_engineering=True):
|
| 89 |
+
"""Handle missing values, categorical encoding, and feature engineering"""
|
| 90 |
+
# Basic preprocessing
|
| 91 |
+
df = df.dropna()
|
| 92 |
+
|
| 93 |
+
# Convert categorical variables if any
|
| 94 |
+
categorical_cols = df.select_dtypes(include=['object']).columns
|
| 95 |
+
for col in categorical_cols:
|
| 96 |
+
if len(df[col].unique()) <= 10: # One-hot encode if few categories
|
| 97 |
+
df = pd.concat([df, pd.get_dummies(df[col], prefix=col)], axis=1)
|
| 98 |
+
df = df.drop(col, axis=1)
|
| 99 |
+
|
| 100 |
+
# Feature engineering
|
| 101 |
+
if feature_engineering:
|
| 102 |
+
# Create polynomial features for numerical columns
|
| 103 |
+
num_cols = df.select_dtypes(include=['int64', 'float64']).columns
|
| 104 |
+
if len(num_cols) > 0:
|
| 105 |
+
poly = PolynomialFeatures(degree=2, interaction_only=True, include_bias=False)
|
| 106 |
+
poly_features = poly.fit_transform(df[num_cols])
|
| 107 |
+
poly_cols = [f"poly_{i}" for i in range(poly_features.shape[1])]
|
| 108 |
+
poly_df = pd.DataFrame(poly_features, columns=poly_cols)
|
| 109 |
+
df = pd.concat([df, poly_df], axis=1)
|
| 110 |
+
|
| 111 |
+
return df
|
| 112 |
|
| 113 |
+
def evaluate_model(X, y, model, test_size=0.2):
|
| 114 |
+
"""Evaluate model performance with various metrics"""
|
| 115 |
+
X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=test_size, random_state=42)
|
| 116 |
+
|
| 117 |
+
# Standardize features
|
| 118 |
+
scaler = StandardScaler()
|
| 119 |
+
X_train = scaler.fit_transform(X_train)
|
| 120 |
+
X_test = scaler.transform(X_test)
|
| 121 |
+
|
| 122 |
+
model.fit(X_train, y_train)
|
| 123 |
+
y_pred = model.predict(X_test)
|
| 124 |
+
|
| 125 |
+
return {
|
| 126 |
+
'accuracy': accuracy_score(y_test, y_pred),
|
| 127 |
+
'precision': precision_score(y_test, y_pred, average='weighted'),
|
| 128 |
+
'recall': recall_score(y_test, y_pred, average='weighted'),
|
| 129 |
+
'f1': f1_score(y_test, y_pred, average='weighted')
|
| 130 |
+
}
|
| 131 |
|
| 132 |
+
def generate_explainability_plots(X, model, feature_names, output_dir='./figures'):
|
| 133 |
+
"""Generate SHAP and LIME explainability plots"""
|
| 134 |
+
os.makedirs(output_dir, exist_ok=True)
|
| 135 |
+
plot_paths = []
|
| 136 |
+
|
| 137 |
+
# SHAP Analysis
|
| 138 |
+
explainer = shap.Explainer(model)
|
| 139 |
+
shap_values = explainer(X)
|
| 140 |
+
|
| 141 |
+
plt = shap.summary_plot(shap_values, X, feature_names=feature_names, show=False)
|
| 142 |
+
shap_path = os.path.join(output_dir, 'shap_summary.png')
|
| 143 |
+
plt.savefig(shap_path, bbox_inches='tight')
|
| 144 |
+
plt.close()
|
| 145 |
+
plot_paths.append(shap_path)
|
| 146 |
+
|
| 147 |
+
# LIME Analysis
|
| 148 |
+
explainer = lime.lime_tabular.LimeTabularExplainer(
|
| 149 |
+
X,
|
| 150 |
+
feature_names=feature_names,
|
| 151 |
+
class_names=['class_0', 'class_1'], # Update based on your classes
|
| 152 |
+
verbose=True,
|
| 153 |
+
mode='classification'
|
| 154 |
+
)
|
| 155 |
+
|
| 156 |
+
# Explain a random instance
|
| 157 |
+
exp = explainer.explain_instance(X[0], model.predict_proba, num_features=5)
|
| 158 |
+
lime_path = os.path.join(output_dir, 'lime_explanation.png')
|
| 159 |
+
exp.as_pyplot_figure().savefig(lime_path, bbox_inches='tight')
|
| 160 |
+
plot_paths.append(lime_path)
|
| 161 |
+
|
| 162 |
+
return plot_paths
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 163 |
|
| 164 |
+
def analyze_data(csv_file, additional_notes="", perform_ml=True):
|
| 165 |
start_time = time.time()
|
| 166 |
process = psutil.Process(os.getpid())
|
| 167 |
initial_memory = process.memory_info().rss / 1024 ** 2
|
|
|
|
| 174 |
run = wandb.init(project="huggingface-data-analysis", config={
|
| 175 |
"model": "mistralai/Mixtral-8x7B-Instruct-v0.1",
|
| 176 |
"additional_notes": additional_notes,
|
| 177 |
+
"source_file": csv_file.name if csv_file else None,
|
| 178 |
+
"perform_ml": perform_ml
|
| 179 |
})
|
| 180 |
|
| 181 |
+
# Load and preprocess data
|
| 182 |
+
df = pd.read_csv(csv_file)
|
| 183 |
+
processed_df = preprocess_data(df)
|
| 184 |
+
|
| 185 |
+
metrics = None
|
| 186 |
+
explainability_plots = None
|
| 187 |
+
|
| 188 |
+
if perform_ml and len(processed_df.columns) > 1:
|
| 189 |
+
try:
|
| 190 |
+
# Assume last column is target for demonstration
|
| 191 |
+
X = processed_df.iloc[:, :-1].values
|
| 192 |
+
y = processed_df.iloc[:, -1].values
|
| 193 |
+
|
| 194 |
+
# Evaluate baseline model
|
| 195 |
+
baseline_model = RandomForestClassifier(random_state=42)
|
| 196 |
+
metrics = evaluate_model(X, y, baseline_model)
|
| 197 |
+
|
| 198 |
+
# Generate explainability plots
|
| 199 |
+
feature_names = processed_df.columns[:-1]
|
| 200 |
+
explainability_plots = generate_explainability_plots(X[:100], baseline_model, feature_names)
|
| 201 |
+
|
| 202 |
+
wandb.log(metrics)
|
| 203 |
+
except Exception as e:
|
| 204 |
+
print(f"ML analysis failed: {str(e)}")
|
| 205 |
+
|
| 206 |
agent = CodeAgent(tools=[], model=model, additional_authorized_imports=["numpy", "pandas", "matplotlib.pyplot", "seaborn"])
|
| 207 |
analysis_result = agent.run("""
|
| 208 |
You are an expert data analyst. Perform comprehensive analysis including:
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| 223 |
wandb.log({os.path.basename(viz): wandb.Image(viz)})
|
| 224 |
|
| 225 |
run.finish()
|
| 226 |
+
return format_analysis_report(analysis_result, visuals, metrics, explainability_plots)
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| 227 |
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| 228 |
+
def objective(trial):
|
| 229 |
+
# Define hyperparameter space
|
| 230 |
+
params = {
|
| 231 |
+
'n_estimators': trial.suggest_int('n_estimators', 50, 500),
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| 232 |
+
'max_depth': trial.suggest_int('max_depth', 3, 15),
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| 233 |
+
'min_samples_split': trial.suggest_int('min_samples_split', 2, 10),
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| 234 |
+
'min_samples_leaf': trial.suggest_int('min_samples_leaf', 1, 5),
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| 235 |
+
'max_features': trial.suggest_categorical('max_features', ['sqrt', 'log2', None]),
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| 236 |
+
'bootstrap': trial.suggest_categorical('bootstrap', [True, False])
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| 237 |
+
}
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| 238 |
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| 239 |
+
# Load data (you would need to pass this or make it available)
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| 240 |
+
df = pd.read_csv("temp_data.csv") # You'll need to handle this properly
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| 241 |
+
processed_df = preprocess_data(df)
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| 242 |
+
X = processed_df.iloc[:, :-1].values
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| 243 |
+
y = processed_df.iloc[:, -1].values
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| 244 |
X_train, X_test, y_train, y_test = train_test_split(X, y, test_size=0.2, random_state=42)
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| 245 |
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| 246 |
+
# Standardize features
|
| 247 |
+
scaler = StandardScaler()
|
| 248 |
+
X_train = scaler.fit_transform(X_train)
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| 249 |
+
X_test = scaler.transform(X_test)
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| 250 |
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| 251 |
+
# Create and evaluate model
|
| 252 |
+
model = RandomForestClassifier(**params, random_state=42)
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| 253 |
+
model.fit(X_train, y_train)
|
| 254 |
+
y_pred = model.predict(X_test)
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|
| 255 |
|
| 256 |
+
# Return metric to optimize (F1 score in this case)
|
| 257 |
+
return f1_score(y_test, y_pred, average='weighted')
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|
| 258 |
|
| 259 |
+
def tune_hyperparameters(n_trials: int, csv_file):
|
| 260 |
+
try:
|
| 261 |
+
# Save the uploaded file temporarily for Optuna
|
| 262 |
+
if csv_file:
|
| 263 |
+
temp_path = "temp_data.csv"
|
| 264 |
+
with open(temp_path, "wb") as f:
|
| 265 |
+
f.write(csv_file.read())
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|
| 266 |
|
| 267 |
+
study = optuna.create_study(direction="maximize")
|
| 268 |
+
study.optimize(objective, n_trials=n_trials)
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|
| 269 |
|
| 270 |
+
os.remove(temp_path)
|
| 271 |
+
return f"Best Hyperparameters: {study.best_params}\nBest F1 Score: {study.best_value:.4f}"
|
| 272 |
+
else:
|
| 273 |
+
return "Please upload a CSV file first for hyperparameter tuning."
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|
| 274 |
except Exception as e:
|
| 275 |
+
return f"Hyperparameter tuning failed: {str(e)}"
|
|
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|
| 276 |
|
| 277 |
with gr.Blocks(theme=gr.themes.Soft()) as demo:
|
| 278 |
+
gr.Markdown("## 📊 AI Data Analysis Agent with Hyperparameter Optimization")
|
| 279 |
+
with gr.Row():
|
| 280 |
+
with gr.Column():
|
| 281 |
+
file_input = gr.File(label="Upload CSV Dataset", type="filepath")
|
| 282 |
+
notes_input = gr.Textbox(label="Dataset Notes (Optional)", lines=3)
|
| 283 |
+
perform_ml = gr.Checkbox(label="Perform Machine Learning Analysis", value=True)
|
| 284 |
+
analyze_btn = gr.Button("Analyze", variant="primary")
|
| 285 |
+
optuna_trials = gr.Number(label="Number of Hyperparameter Tuning Trials", value=10)
|
| 286 |
+
tune_btn = gr.Button("Optimize Hyperparameters", variant="secondary")
|
| 287 |
+
with gr.Column():
|
| 288 |
+
analysis_output = gr.Markdown("### Analysis results will appear here...")
|
| 289 |
+
optuna_output = gr.Textbox(label="Best Hyperparameters")
|
| 290 |
+
gallery = gr.Gallery(label="Data Visualizations", columns=2)
|
| 291 |
+
|
| 292 |
+
analyze_btn.click(
|
| 293 |
+
fn=analyze_data,
|
| 294 |
+
inputs=[file_input, notes_input, perform_ml],
|
| 295 |
+
outputs=[analysis_output, gallery]
|
| 296 |
+
)
|
| 297 |
+
tune_btn.click(
|
| 298 |
+
fn=tune_hyperparameters,
|
| 299 |
+
inputs=[optuna_trials, file_input],
|
| 300 |
+
outputs=[optuna_output]
|
| 301 |
+
)
|
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|
| 302 |
|
| 303 |
demo.launch(debug=True)
|