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9381e32
1
Parent(s): 5c4ce0e
Update main.py
Browse files
main.py
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# app = FastAPI()
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# # Load the numerical imputer, scaler, and model
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# num_imputer_filepath = "joblib_files/numerical_imputer.joblib"
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# scaler_filepath = "joblib_files/scaler.joblib"
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# model_filepath = "joblib_files/lr_model.joblib"
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# num_imputer = joblib.load(num_imputer_filepath)
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# scaler = joblib.load(scaler_filepath)
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# model = joblib.load(model_filepath)
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# class PatientData(BaseModel):
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# PRG: float
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# PL: float
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# PR: float
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# SK: float
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# TS: float
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# M11: float
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# BD2: float
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# Age: float
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# Insurance: int
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# def preprocess_input_data(user_input):
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# input_data_df = pd.DataFrame([user_input])
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# num_columns = [col for col in input_data_df.columns if input_data_df[col].dtype != 'object']
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# input_data_imputed_num = num_imputer.transform(input_data_df[num_columns])
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# input_scaled_df = pd.DataFrame(scaler.transform(input_data_imputed_num), columns=num_columns)
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# return input_scaled_df
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# @app.get("/")
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# def read_root():
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# return "Sepsis Prediction App"
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# @app.post("/sepsis/predict")
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# def get_data_from_user(data:PatientData):
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# user_input = data.dict()
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# input_scaled_df = preprocess_input_data(user_input)
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# probabilities = model.predict_proba(input_scaled_df)[0]
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# prediction = np.argmax(probabilities)
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# sepsis_status = "Positive" if prediction == 1 else "Negative"
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# probability = probabilities[1] if prediction == 1 else probabilities[0]
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# if prediction == 1:
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# sepsis_explanation = "A positive prediction suggests that the patient might be exhibiting sepsis symptoms and requires immediate medical attention."
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# else:
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# sepsis_explanation = "A negative prediction suggests that the patient is not currently exhibiting sepsis symptoms."
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# statement = f"The patient's sepsis status is {sepsis_status} with a probability of {probability:.2f}. {sepsis_explanation}"
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# user_input_statement = "user-inputted data: "
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# output_df = pd.DataFrame([user_input])
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# result = {'predicted_sepsis': sepsis_status, 'statement': statement, 'user_input_statement': user_input_statement, 'input_data_df': output_df.to_dict('records')}
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# return result
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# from fastapi import FastAPI, Form
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# from pydantic import BaseModel
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# import joblib
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# import pandas as pd
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# import numpy as np
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# import uvicorn
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# from fastapi.responses import JSONResponse
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# app = FastAPI()
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# # Load the entire pipeline
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# pipeline_filepath = "pipeline.joblib"
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# pipeline = joblib.load(pipeline_filepath)
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# class PatientData(BaseModel):
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# PRG: float
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# PL: float
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# PR: float
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# SK: float
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# TS: float
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# M11: float
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# BD2: float
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# Age: float
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# Insurance: int
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# @app.get("/")
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# def read_root():
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# explanation = {
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# 'message': "Welcome to the Sepsis Prediction App",
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# 'description': "This API allows you to predict sepsis based on patient data.",
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# 'usage': "Submit a POST request to /predict with patient data to make predictions.",
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# 'input_fields': {
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# 'PRG': 'Plasma_glucose',
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# 'PL': 'Blood_Work_Result_1',
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# 'PR': 'Blood_Pressure',
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# 'SK': 'Blood_Work_Result_2',
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# 'TS': 'Blood_Work_Result_3',
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# 'M11': 'Body_mass_index',
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# 'BD2': 'Blood_Work_Result_4',
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# 'Insurance': 'Sepsis (Positive = 1, Negative = 0)'
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# }
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# }
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# return explanation
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# @app.post("/predict")
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# def get_data_from_user(data: PatientData):
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# user_input = data.model_dump()
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# input_df = pd.DataFrame([user_input])
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# # Make predictions using the loaded pipeline
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# # Make predictions using the loaded pipeline
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# predictions = pipeline.predict(user_input)
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# probabilities = pipeline.decision_function(user_input)
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# # Assuming the pipeline uses a Logistic Regression model
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# probability_of_positive_class = probabilities[0]
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# # Calculate the prediction
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# prediction = 1 if probability_of_positive_class >= 0.5 else 0
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# sepsis_status = "Positive" if prediction == 1 else "Negative"
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# sepsis_explanation = "A positive prediction suggests that the patient might be exhibiting sepsis symptoms and requires immediate medical attention." if prediction == 1 else "A negative prediction suggests that the patient is not currently exhibiting sepsis symptoms."
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# if prediction == 1:
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# sepsis_status = "Positive"
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# sepsis_explanation = "A positive prediction suggests that the patient might be exhibiting sepsis symptoms and requires immediate medical attention."
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# else:
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# sepsis_status = "Negative"
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# sepsis_explanation = "A negative prediction suggests that the patient is not currently exhibiting sepsis symptoms."
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# result = {
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# 'predicted_sepsis': sepsis_status,
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# 'sepsis_explanation': sepsis_explanation
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# }
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# return result
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from fastapi import FastAPI
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from pydantic import BaseModel
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import joblib
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}
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return explanation
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@app.post("/predict")
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def get_data_from_user(data: PatientData):
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user_input = data.dict()
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from fastapi.openapi.models import APIKey, OAuthFlows as OAuthFlowsModel
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from fastapi.openapi.models import OAuthFlowAuthorizationCode as OAuthFlowAuthorizationCodeModel
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from fastapi.openapi.models import OAuthFlowAuthorizationCode as OAuthFlowAuthorizationCodeModel
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from fastapi.openapi.models import OAuthFlowsAuthorizationCode
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from fastapi.openapi.models import OAuthFlowAuthorizationCode as OAuthFlowAuthorizationCodeModel
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from fastapi.openapi.models import OAuthFlowAuthorizationCode as OAuthFlowAuthorizationCodeModel
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from fastapi.openapi.models import OAuthFlowAuthorizationCode
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from fastapi.openapi.models import OAuthFlowsAuthorizationCode
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from fastapi import FastAPI
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from pydantic import BaseModel
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import joblib
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}
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return explanation
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#swagger ui
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@app.get("/docs")
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async def get_swagger_ui_html():
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return get_swagger_ui_html(openapi_url="/openapi.json", title="API docs")
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@app.post("/predict")
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def get_data_from_user(data: PatientData):
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user_input = data.dict()
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