CellPilot / SAMHI /environment.yml
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name: histo3.10
channels:
- pytorch
- nvidia
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- anyio=4.3.0=pyhd8ed1ab_0
- argon2-cffi=23.1.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py310h2372a71_4
- arrow=1.3.0=pyhd8ed1ab_0
- asttokens=2.4.1=pyhd8ed1ab_0
- async-lru=2.0.4=pyhd8ed1ab_0
- attrs=23.2.0=pyh71513ae_0
- babel=2.14.0=pyhd8ed1ab_0
- beautifulsoup4=4.12.3=pyha770c72_0
- blas=1.0=mkl
- bleach=6.1.0=pyhd8ed1ab_0
- brotli-python=1.0.9=py310hd8f1fbe_7
- bzip2=1.0.8=hd590300_5
- ca-certificates=2024.3.11=h06a4308_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cairo=1.18.0=h3faef2a_0
- certifi=2024.2.2=pyhd8ed1ab_0
- cffi=1.16.0=py310h2fee648_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- colorama=0.4.6=pyhd8ed1ab_0
- comm=0.2.2=pyhd8ed1ab_0
- cuda-cudart=12.1.105=0
- cuda-cupti=12.1.105=0
- cuda-libraries=12.1.0=0
- cuda-nvrtc=12.1.105=0
- cuda-nvtx=12.1.105=0
- cuda-opencl=12.4.127=0
- cuda-runtime=12.1.0=0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- exceptiongroup=1.2.0=pyhd8ed1ab_2
- executing=2.0.1=pyhd8ed1ab_0
- expat=2.6.2=h6a678d5_0
- ffmpeg=4.3=hf484d3e_0
- font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
- font-ttf-inconsolata=2.001=hcb22688_0
- font-ttf-source-code-pro=2.030=hd3eb1b0_0
- font-ttf-ubuntu=0.83=h8b1ccd4_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-anaconda=1=h8fa9717_0
- fonts-conda-ecosystem=1=hd3eb1b0_0
- fqdn=1.5.1=pyhd8ed1ab_0
- freetype=2.12.1=h4a9f257_0
- gdk-pixbuf=2.42.11=hb9ae30d_0
- gmp=6.2.1=h295c915_3
- gmpy2=2.1.2=py310heeb90bb_0
- gnutls=3.6.15=he1e5248_0
- h11=0.14.0=pyhd8ed1ab_0
- h2=4.1.0=pyhd8ed1ab_0
- hpack=4.0.0=pyh9f0ad1d_0
- httpcore=1.0.5=pyhd8ed1ab_0
- httpx=0.27.0=pyhd8ed1ab_0
- hyperframe=6.0.1=pyhd8ed1ab_0
- icu=73.2=h59595ed_0
- idna=3.7=pyhd8ed1ab_0
- importlib_metadata=7.1.0=hd8ed1ab_0
- importlib_resources=6.4.0=pyhd8ed1ab_0
- intel-openmp=2023.1.0=hdb19cb5_46306
- ipykernel=6.29.3=pyhd33586a_0
- ipython=8.22.2=pyh707e725_0
- isoduration=20.11.0=pyhd8ed1ab_0
- jedi=0.19.1=pyhd8ed1ab_0
- jinja2=3.1.3=pyhd8ed1ab_0
- json5=0.9.25=pyhd8ed1ab_0
- jsonpointer=2.4=py310hff52083_3
- jsonschema=4.21.1=pyhd8ed1ab_0
- jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
- jsonschema-with-format-nongpl=4.21.1=pyhd8ed1ab_0
- jupyter-lsp=2.2.5=pyhd8ed1ab_0
- jupyter_client=8.6.1=pyhd8ed1ab_0
- jupyter_core=5.7.2=py310hff52083_0
- jupyter_events=0.10.0=pyhd8ed1ab_0
- jupyter_server=2.14.0=pyhd8ed1ab_0
- jupyter_server_terminals=0.5.3=pyhd8ed1ab_0
- jupyterlab=4.1.6=pyhd8ed1ab_0
- jupyterlab_pygments=0.3.0=pyhd8ed1ab_1
- jupyterlab_server=2.27.1=pyhd8ed1ab_0
- lame=3.100=h7b6447c_0
- lcms2=2.16=hb7c19ff_0
- ld_impl_linux-64=2.40=h55db66e_0
- lerc=4.0.0=h27087fc_0
- libcublas=12.1.0.26=0
- libcufft=11.0.2.4=0
- libcufile=1.9.1.3=0
- libcurand=10.3.5.147=0
- libcusolver=11.4.4.55=0
- libcusparse=12.0.2.55=0
- libdeflate=1.20=hd590300_0
- libdicom=1.0.5=hd590300_1
- libffi=3.4.4=h6a678d5_0
- libgcc-ng=13.2.0=hc881cc4_6
- libglib=2.80.0=hf2295e7_6
- libgomp=13.2.0=hc881cc4_6
- libiconv=1.17=hd590300_2
- libidn2=2.3.4=h5eee18b_0
- libjpeg-turbo=3.0.0=hd590300_1
- libnpp=12.0.2.50=0
- libnsl=2.0.1=hd590300_0
- libnvjitlink=12.1.105=0
- libnvjpeg=12.1.1.14=0
- libpng=1.6.43=h2797004_0
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.45.3=h2797004_0
- libstdcxx-ng=13.2.0=h95c4c6d_6
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.6.0=h1dd3fc0_3
- libunistring=0.9.10=h27cfd23_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.2=h5eee18b_0
- libxcb=1.15=h7f8727e_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.12.6=h232c23b_2
- libzlib=1.2.13=hd590300_5
- lightning=2.2.5=pyhd8ed1ab_0
- lightning-utilities=0.11.2=pyhd8ed1ab_0
- llvm-openmp=14.0.6=h9e868ea_0
- lz4-c=1.9.4=h6a678d5_0
- markupsafe=2.1.5=py310h2372a71_0
- matplotlib-inline=0.1.7=pyhd8ed1ab_0
- mistune=3.0.2=pyhd8ed1ab_0
- mkl=2023.1.0=h213fc3f_46344
- mkl-service=2.4.0=py310h5eee18b_1
- mkl_fft=1.3.8=py310h5eee18b_0
- mkl_random=1.2.4=py310hdb19cb5_0
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.2=hb69a4c5_1
- mpmath=1.3.0=py310h06a4308_0
- nbclient=0.10.0=pyhd8ed1ab_0
- nbconvert-core=7.16.3=pyhd8ed1ab_1
- nbformat=5.10.4=pyhd8ed1ab_0
- ncurses=6.4.20240210=h59595ed_0
- nest-asyncio=1.6.0=pyhd8ed1ab_0
- nettle=3.7.3=hbbd107a_1
- networkx=3.1=py310h06a4308_0
- notebook-shim=0.2.4=pyhd8ed1ab_0
- numpy=1.26.4=py310h5f9d8c6_0
- numpy-base=1.26.4=py310hb5e798b_0
- openh264=2.1.1=h4ff587b_0
- openjpeg=2.5.2=h488ebb8_0
- openslide=4.0.0=h58ba908_1
- openslide-python=1.3.1=py310h091d076_2
- openssl=3.3.0=h4ab18f5_3
- overrides=7.7.0=pyhd8ed1ab_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.4=pyhd8ed1ab_0
- pcre2=10.43=hcad00b1_0
- pexpect=4.9.0=pyhd8ed1ab_0
- pickleshare=0.7.5=py_1003
- pillow=10.3.0=py310hf73ecf8_0
- pip=24.0=pyhd8ed1ab_0
- pixman=0.43.2=h59595ed_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- platformdirs=4.2.1=pyhd8ed1ab_0
- prometheus_client=0.20.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.42=pyha770c72_0
- psutil=5.9.8=py310h2372a71_0
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pycparser=2.22=pyhd8ed1ab_0
- pygments=2.17.2=pyhd8ed1ab_0
- pysocks=1.7.1=pyha2e5f31_6
- python=3.10.14=hd12c33a_0_cpython
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-fastjsonschema=2.19.1=pyhd8ed1ab_0
- python-json-logger=2.0.7=pyhd8ed1ab_0
- python_abi=3.10=2_cp310
- pytorch=2.3.0=py3.10_cuda12.1_cudnn8.9.2_0
- pytorch-cuda=12.1=ha16c6d3_5
- pytorch-lightning=2.2.2=pyhd8ed1ab_0
- pytorch-mutex=1.0=cuda
- pyyaml=6.0.1=py310h2372a71_1
- readline=8.2=h8228510_1
- referencing=0.34.0=pyhd8ed1ab_0
- rfc3339-validator=0.1.4=pyhd8ed1ab_0
- rfc3986-validator=0.1.1=pyh9f0ad1d_0
- rpds-py=0.18.0=py310hcb5633a_0
- send2trash=1.8.3=pyh0d859eb_0
- six=1.16.0=pyh6c4a22f_0
- sniffio=1.3.1=pyhd8ed1ab_0
- soupsieve=2.5=pyhd8ed1ab_1
- sqlite=3.45.3=h2c6b66d_0
- stack_data=0.6.2=pyhd8ed1ab_0
- sympy=1.12=py310h06a4308_0
- tbb=2021.8.0=hdb19cb5_0
- terminado=0.18.1=pyh0d859eb_0
- tinycss2=1.2.1=pyhd8ed1ab_0
- tk=8.6.13=noxft_h4845f30_101
- tomli=2.0.1=pyhd8ed1ab_0
- torchaudio=2.3.0=py310_cu121
- torchmetrics=1.4.0.post0=pyhd8ed1ab_0
- torchtriton=2.3.0=py310
- torchvision=0.18.0=py310_cu121
- tornado=6.4=py310h2372a71_0
- traitlets=5.14.3=pyhd8ed1ab_0
- types-python-dateutil=2.9.0.20240316=pyhd8ed1ab_0
- typing_extensions=4.11.0=pyha770c72_0
- typing_utils=0.1.0=pyhd8ed1ab_0
- uri-template=1.3.0=pyhd8ed1ab_0
- wcwidth=0.2.13=pyhd8ed1ab_0
- webcolors=1.13=pyhd8ed1ab_0
- webencodings=0.5.1=pyhd8ed1ab_2
- websocket-client=1.8.0=pyhd8ed1ab_0
- wheel=0.43.0=pyhd8ed1ab_1
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.9=h8ee46fc_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.11=hd590300_0
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h27cfd23_1007
- xz=5.4.6=h5eee18b_0
- yaml=0.2.5=h7f98852_2
- zeromq=4.3.5=h6a678d5_0
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hc292b87_0
- pip:
- absl-py==2.1.0
- addict==2.4.0
- aiofiles==23.2.1
- albucore==0.0.12
- albumentations==1.4.11
- aliyun-python-sdk-core==2.15.1
- aliyun-python-sdk-kms==2.16.3
- altair==5.3.0
- annotated-types==0.7.0
- asciitree==0.3.3
- asyncio-atexit==1.0.1
- backoff==2.2.1
- click==8.1.7
- cloudpickle==3.0.0
- crcmod==1.7
- cryptography==43.0.0
- debugpy==1.8.1
- deprecated==1.2.14
- dnspython==2.6.1
- docker-pycreds==0.4.0
- email-validator==2.1.1
- eval-type-backport==0.2.0
- fastapi==0.111.0
- fastapi-cli==0.0.4
- fasteners==0.19
- ffmpy==0.3.2
- filelock==3.14.0
- fsspec==2024.3.1
- gdown==5.1.0
- googleapis-common-protos==1.63.0
- gradio==4.36.1
- gradio-client==1.0.1
- gradio-image-prompter==0.1.0
- grpcio==1.65.1
- h5py==3.11.0
- httptools==0.6.1
- huggingface-hub==0.23.3
- imagecodecs==2024.1.1
- importlib-metadata==6.11.0
- jmespath==0.10.0
- jupyter-capture-output==0.0.11
- loky==3.0.0
- markdown==3.6
- markdown-it-py==3.0.0
- mdurl==0.1.2
- mmcv==1.6.2
- mmengine==0.10.4
- model-index==0.1.11
- monai==1.3.1
- numcodecs==0.12.1
- nvidia-nccl-cu12==2.20.5
- opencv-python==4.9.0.80
- opencv-python-headless==4.10.0.84
- opendatalab==0.0.10
- openmim==0.3.9
- opentelemetry-api==1.21.0
- opentelemetry-exporter-otlp-proto-common==1.21.0
- opentelemetry-exporter-otlp-proto-http==1.21.0
- opentelemetry-proto==1.21.0
- opentelemetry-sdk==1.21.0
- opentelemetry-semantic-conventions==0.42b0
- openxlab==0.1.1
- ordered-set==4.1.0
- orjson==3.10.4
- oss2==2.17.0
- packaging==24.1
- pandas==2.2.2
- protobuf==4.25.3
- pycocotools==2.0.7
- pycryptodome==3.20.0
- pydantic==2.7.4
- pydantic-core==2.18.4
- pydub==0.25.1
- pyparsing==3.1.2
- python-multipart==0.0.9
- pytz==2023.4
- pyzmq==26.0.2
- requests==2.28.2
- rich==13.4.2
- ruff==0.4.8
- schedulefree==1.2.5
- segment-anything==1.0
- semantic-version==2.10.0
- sentry-sdk==2.2.1
- setproctitle==1.3.3
- setuptools==60.2.0
- shapely==2.0.4
- shellingham==1.5.4
- slideio==2.5.0
- starlette==0.37.2
- synapseclient==4.2.0
- tensorboard==2.17.0
- tensorboard-data-server==0.7.2
- termcolor==2.4.0
- tifffile==2024.4.24
- timm==0.6.11
- tomlkit==0.12.0
- toolz==0.12.1
- tqdm==4.65.2
- triton==2.3.0
- typer==0.12.3
- typing-extensions==4.12.2
- tzdata==2024.1
- ujson==5.10.0
- urllib3==1.26.19
- uvicorn==0.30.1
- uvloop==0.19.0
- wandb==0.17.0
- watchfiles==0.22.0
- websockets==11.0.3
- werkzeug==3.0.3
- yapf==0.40.2
- zarr==2.17.2
prefix: /vol/data/miniconda3/envs/histo3.10