download_data.sh

#!/bin/bash
cd /vol/data/histo_datasets
#mkdir SegPath
cd SegPath
#mkdir epithelial_cells
cd epithelial_cells
#wget https://zenodo.org/records/7412731/files/panCK_Epithelium.tar.gz
#wget https://zenodo.org/records/7412731/files/panCK_fileinfo.csv
tar -xvf panCK_Epithelium.tar.gz
cd ..
#mkdir smooth_muscle_cells
cd smooth_muscle_cells
#wget https://zenodo.org/records/7412732/files/aSMA_SmoothMuscle.tar.gz
#wget https://zenodo.org/records/7412732/files/aSMA_fileinfo.csv
tar -xvf aSMA_SmoothMuscle.tar.gz
cd ..
#mkdir red_blood_cells
cd red_blood_cells
#wget https://zenodo.org/records/7412580/files/CD235a_RBC.tar.gz
#wget https://zenodo.org/records/7412580/files/CD235a_fileinfo.csv
tar -xvf CD235a_RBC.tar.gz
cd ..
#mkdir leukocytes
cd leukocytes
#wget https://zenodo.org/records/7412739/files/CD45RB_Leukocyte.tar.gz
#wget https://zenodo.org/records/7412739/files/CD45RB_fileinfo.csv
tar -xvf CD45RB_Leukocyte.tar.gz
cd ..
#mkdir lymphocytes
cd lymphocytes
#wget https://zenodo.org/records/7412529/files/CD3CD20_Lymphocyte.tar.gz
#wget https://zenodo.org/records/7412529/files/CD3CD20_fileinfo.csv
tar -xvf CD3CD20_Lymphocyte.tar.gz
cd ..
#mkdir endothelial_cells
#cd endothelial_cells
#wget https://zenodo.org/records/7412512/files/ERG_Endothelium.tar.gz
#wget https://zenodo.org/records/7412512/files/ERG_fileinfo.csv
#tar -xvf ERG_Endothelium.tar.gz
#cd ..
#mkdir plasma_cells
cd plasma_cells
#wget https://zenodo.org/records/7412500/files/MIST1_PlasmaCell.tar.gz
#wget https://zenodo.org/records/7412500/files/MIST1_fileinfo.csv
tar -xvf MIST1_PlasmaCell.tar.gz
cd ..
#mkdir myeloid_cells
cd myeloid_cells
#wget https://zenodo.org/records/7412690/files/MNDA_MyeloidCell.tar.gz
#wget https://zenodo.org/records/7412690/files/MNDA_fileinfo.csv
tar -xvf MNDA_MyeloidCell.tar.gz
cd ../..

#mkdir PanNuke
#cd PanNuke
#wget https://warwick.ac.uk/fac/cross_fac/tia/data/pannuke/fold_1.zip
#wget https://warwick.ac.uk/fac/cross_fac/tia/data/pannuke/fold_2.zip
#wget https://warwick.ac.uk/fac/cross_fac/tia/data/pannuke/fold_3.zip